Wall clock time and date at job start Tue Mar 31 2020 12:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.46684 * 2 1 4 4 C 1.36947 * 120.00017 * 267.21682 * 3 2 1 5 5 H 1.07994 * 120.00194 * 138.75061 * 4 3 2 6 6 C 1.38973 * 119.99789 * 319.02556 * 4 3 2 7 7 N 1.31422 * 120.00059 * 165.22923 * 6 4 3 8 8 Si 1.86798 * 120.00109 * 345.22487 * 6 4 3 9 9 H 1.48505 * 109.47029 * 92.06091 * 8 6 4 10 10 H 1.48504 * 109.47263 * 212.05958 * 8 6 4 11 11 H 1.48495 * 109.47182 * 332.06282 * 8 6 4 12 12 C 1.34779 * 120.00397 * 87.21834 * 3 2 1 13 13 O 1.21686 * 120.00239 * 174.67512 * 12 3 2 14 14 C 1.47080 * 119.99725 * 354.68080 * 12 3 2 15 15 C 1.35199 * 122.48843 * 175.24982 * 14 12 3 16 16 S 1.76192 * 108.23710 * 179.90478 * 15 14 12 17 17 C 1.76051 * 90.17401 * 0.29255 * 16 15 14 18 18 N 1.38594 * 125.17241 * 179.79397 * 17 16 15 19 19 C 1.39154 * 120.00409 * 6.04044 * 18 17 16 20 20 C 1.39115 * 119.70639 * 185.52421 * 19 18 17 21 21 C 1.38313 * 119.10212 * 179.97438 * 20 19 18 22 22 C 1.38876 * 118.50130 * 0.02562 * 21 20 19 23 23 C 1.38054 * 119.32656 * 359.97438 * 22 21 20 24 24 N 1.31953 * 120.84940 * 359.74221 * 23 22 21 25 25 N 1.29433 * 109.64670 * 359.82641 * 17 16 15 26 26 H 1.09004 * 109.46919 * 186.31121 * 1 2 3 27 27 H 1.08997 * 109.47189 * 306.31036 * 1 2 3 28 28 H 1.08998 * 109.47009 * 66.31824 * 1 2 3 29 29 H 1.08999 * 109.47488 * 240.00192 * 2 1 3 30 30 H 1.09001 * 109.47367 * 119.99527 * 2 1 3 31 31 H 0.96999 * 119.99959 * 179.97438 * 7 6 4 32 32 H 1.07991 * 125.88639 * 0.02562 * 15 14 12 33 33 H 0.97008 * 119.99719 * 186.04329 * 18 17 16 34 34 H 1.08004 * 120.45398 * 359.95273 * 20 19 18 35 35 H 1.07997 * 120.75468 * 180.02562 * 21 20 19 36 36 H 1.08003 * 120.33870 * 180.02562 * 22 21 20 37 37 H 1.07994 * 119.57373 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.3007 2.0076 -1.1846 5 1 2.0183 3.0397 -1.3305 6 6 2.9458 1.3134 -2.2011 7 7 2.9612 1.7998 -3.4219 8 14 3.7912 -0.3110 -1.8323 9 1 2.8419 -1.4281 -2.0697 10 1 4.9716 -0.4674 -2.7196 11 1 4.2319 -0.3289 -0.4143 12 6 2.1894 2.0355 1.1658 13 8 2.6857 3.1466 1.1728 14 6 1.7766 1.4065 2.4296 15 6 2.0094 1.9753 3.6339 16 16 1.3616 0.9119 4.8804 17 6 0.8350 -0.2254 3.6440 18 7 0.1842 -1.4246 3.8874 19 6 -0.2124 -1.7511 5.1807 20 6 -0.7606 -3.0035 5.4382 21 6 -1.1501 -3.3149 6.7283 22 6 -0.9780 -2.3595 7.7214 23 6 -0.4272 -1.1364 7.3949 24 7 -0.0596 -0.8690 6.1561 25 7 1.1487 0.2285 2.4731 26 1 -0.3633 -1.0215 0.1130 27 1 -0.3633 0.6085 0.8281 28 1 -0.3633 0.4128 -0.9411 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.4117 1.3154 -4.1313 32 1 2.5052 2.9197 3.8027 33 1 0.0053 -2.0365 3.1562 34 1 -0.8808 -3.7227 4.6416 35 1 -1.5783 -4.2793 6.9583 36 1 -1.2715 -2.5714 8.7390 37 1 -0.2913 -0.3907 8.1641 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346176343.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:51 Heat of formation + Delta-G solvation = 69.721601 kcal Electronic energy + Delta-G solvation = -23836.711461 eV Core-core repulsion = 20320.768619 eV Total energy + Delta-G solvation = -3515.942842 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.56938 -41.20592 -39.40856 -37.18572 -36.80898 -34.32848 -33.39594 -31.72241 -31.34080 -29.84715 -27.96229 -25.66154 -24.74459 -24.46155 -23.91243 -22.28713 -20.71018 -19.64025 -18.82071 -18.32515 -18.22499 -17.57867 -16.97130 -16.66919 -16.60107 -16.33842 -15.83326 -15.66626 -15.15907 -14.95515 -14.76759 -14.59015 -14.38052 -14.18238 -13.87988 -13.73389 -13.10351 -12.92490 -12.74421 -12.60332 -12.47660 -12.41342 -11.98485 -11.62535 -11.14651 -10.87063 -10.75892 -10.44742 -10.40484 -10.27268 -9.79308 -9.70572 -8.67538 -8.55611 -6.23645 -0.37676 0.18238 0.31218 0.39641 0.77492 1.12967 1.20518 1.35825 1.39201 1.60366 2.13346 2.44490 2.73976 2.91271 2.96557 3.26836 3.66806 3.97507 4.15214 4.19496 4.22582 4.31035 4.42233 4.51611 4.55329 4.67492 4.76285 4.85411 4.98984 5.07961 5.15416 5.37065 5.41162 5.47061 5.54172 5.91487 5.92802 5.97032 6.46357 6.69149 6.86308 7.03805 7.19869 7.78231 8.60747 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.023250 B = 0.003803 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.991147 B = 7360.121693 C = 8124.294317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.089 3.911 3 N -0.456 5.456 4 C -0.330 4.330 5 H 0.047 0.953 6 C 0.015 3.985 7 N -0.909 5.909 8 Si 0.957 3.043 9 H -0.236 1.236 10 H -0.282 1.282 11 H -0.270 1.270 12 C 0.518 3.482 13 O -0.611 6.611 14 C 0.035 3.965 15 C -0.262 4.262 16 S 0.262 5.738 17 C 0.285 3.715 18 N -0.600 5.600 19 C 0.351 3.649 20 C -0.204 4.204 21 C -0.034 4.034 22 C -0.202 4.202 23 C 0.134 3.866 24 N -0.562 5.562 25 N -0.510 5.510 26 H 0.089 0.911 27 H 0.049 0.951 28 H 0.030 0.970 29 H 0.049 0.951 30 H 0.107 0.893 31 H 0.283 0.717 32 H 0.177 0.823 33 H 0.439 0.561 34 H 0.160 0.840 35 H 0.171 0.829 36 H 0.167 0.833 37 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.436 -18.435 26.058 33.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.033 4.033 3 N -0.175 5.175 4 C -0.458 4.458 5 H 0.065 0.935 6 C -0.187 4.187 7 N -0.546 5.546 8 Si 0.781 3.219 9 H -0.161 1.161 10 H -0.209 1.209 11 H -0.195 1.195 12 C 0.306 3.694 13 O -0.497 6.497 14 C -0.096 4.096 15 C -0.406 4.406 16 S 0.511 5.489 17 C -0.087 4.087 18 N -0.234 5.234 19 C 0.119 3.881 20 C -0.228 4.228 21 C -0.060 4.060 22 C -0.224 4.224 23 C -0.021 4.021 24 N -0.279 5.279 25 N -0.236 5.236 26 H 0.107 0.893 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.125 0.875 31 H 0.092 0.908 32 H 0.194 0.806 33 H 0.281 0.719 34 H 0.177 0.823 35 H 0.189 0.811 36 H 0.184 0.816 37 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -9.969 -17.343 26.302 33.045 hybrid contribution 0.419 -0.266 -1.811 1.878 sum -9.549 -17.608 24.492 31.640 Atomic orbital electron populations 1.21783 0.94197 1.02501 1.00064 1.22261 0.96821 0.82611 1.01568 1.43769 1.56199 1.13488 1.04073 1.18728 1.38929 0.98031 0.90097 0.93493 1.26195 0.95537 1.02878 0.94122 1.69799 1.41778 1.41930 1.01104 0.85724 0.78565 0.79135 0.78520 1.16082 1.20853 1.19496 1.17954 0.81769 0.86398 0.83252 1.90615 1.49622 1.22381 1.87064 1.19680 1.03490 0.92227 0.94217 1.27785 1.08307 1.07435 0.97077 1.85268 1.50498 1.09334 1.03789 1.24401 0.98324 0.93757 0.92179 1.41117 1.57757 1.16242 1.08237 1.18529 0.94152 0.91369 0.84050 1.21610 1.05458 0.95161 1.00531 1.21853 0.92878 1.00506 0.90790 1.22368 1.03103 0.94419 1.02463 1.22914 0.91573 0.97076 0.90579 1.66299 1.24528 1.34350 1.02697 1.66979 1.20280 1.13259 1.23056 0.89267 0.93165 0.95129 0.93276 0.87504 0.90768 0.80583 0.71881 0.82268 0.81112 0.81552 0.80157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.88 9.46 71.98 0.68 -4.20 16 2 C 0.09 3.99 4.29 86.38 0.37 4.36 16 3 N -0.46 -25.24 2.15 -639.61 -1.38 -26.62 16 4 C -0.33 -20.99 9.33 84.07 0.78 -20.21 16 5 H 0.05 3.43 8.02 -2.91 -0.02 3.40 16 6 C 0.02 0.91 5.39 84.93 0.46 1.37 16 7 N -0.91 -56.52 13.96 21.67 0.30 -56.22 16 8 Si 0.96 45.68 24.80 68.60 1.70 47.38 16 9 H -0.24 -9.82 6.64 99.48 0.66 -9.16 16 10 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 11 H -0.27 -13.08 7.10 99.48 0.71 -12.37 16 12 C 0.52 28.47 7.57 86.56 0.66 29.12 16 13 O -0.61 -38.15 16.62 -4.30 -0.07 -38.22 16 14 C 0.04 1.52 6.33 40.50 0.26 1.78 16 15 C -0.26 -9.55 10.84 67.12 0.73 -8.82 16 16 S 0.26 6.99 20.29 -56.49 -1.15 5.84 16 17 C 0.28 8.12 8.36 179.40 1.50 9.61 16 18 N -0.60 -12.20 5.53 -192.08 -1.06 -13.27 16 19 C 0.35 6.02 7.43 133.01 0.99 7.01 16 20 C -0.20 -2.08 9.94 22.50 0.22 -1.86 16 21 C -0.03 -0.22 10.17 22.44 0.23 0.01 16 22 C -0.20 -1.32 10.11 22.38 0.23 -1.09 16 23 C 0.13 1.51 11.17 84.63 0.95 2.45 16 24 N -0.56 -10.14 6.91 -193.15 -1.33 -11.48 16 25 N -0.51 -18.37 4.95 -187.33 -0.93 -19.30 16 26 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 27 H 0.05 1.98 6.77 -2.39 -0.02 1.97 16 28 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.05 2.24 3.21 -2.39 -0.01 2.23 16 30 H 0.11 4.40 5.54 -2.39 -0.01 4.38 16 31 H 0.28 15.98 8.31 -92.71 -0.77 15.21 16 32 H 0.18 6.35 8.01 -2.92 -0.02 6.32 16 33 H 0.44 6.93 8.82 -92.70 -0.82 6.11 16 34 H 0.16 0.88 8.06 -2.91 -0.02 0.85 16 35 H 0.17 -0.03 8.06 -2.91 -0.02 -0.05 16 36 H 0.17 0.09 8.06 -2.91 -0.02 0.07 16 37 H 0.18 1.13 8.06 -2.91 -0.02 1.11 16 Total: -1.00 -85.16 323.66 4.40 -80.76 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 0.27 Total: 11.58 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: 8.04 Total: 19.53 kcal Atomic # 7 Polarization: -122.48 SS G_CDS: -4.40 Total: -126.88 kcal Atomic # 8 Polarization: -38.15 SS G_CDS: -0.07 Total: -38.22 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.70 Total: 47.38 kcal Atomic # 16 Polarization: 6.99 SS G_CDS: -1.15 Total: 5.84 kcal Total: -85.16 4.40 -80.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346176343.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.485 kcal (2) G-P(sol) polarization free energy of solvation -85.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds