Wall clock time and date at job start Tue Mar 31 2020 12:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36876 * 119.99378 * 2 1 4 4 H 1.08001 * 119.99384 * 171.48247 * 3 2 1 5 5 C 1.39047 * 120.00432 * 351.48797 * 3 2 1 6 6 N 1.31357 * 119.99764 * 5.59724 * 5 3 2 7 7 Si 1.86796 * 120.00089 * 185.60738 * 5 3 2 8 8 H 1.48494 * 109.47437 * 59.99218 * 7 5 3 9 9 H 1.48496 * 109.47382 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.46840 * 299.99499 * 7 5 3 11 11 C 1.34774 * 120.00304 * 179.97438 * 2 1 3 12 12 O 1.21587 * 119.99899 * 185.98706 * 11 2 1 13 13 C 1.47720 * 120.00026 * 5.98800 * 11 2 1 14 14 C 1.39668 * 120.15118 * 49.91307 * 13 11 2 15 15 C 1.37919 * 119.84635 * 180.27692 * 14 13 11 16 16 C 1.38399 * 120.14984 * 359.75083 * 15 14 13 17 17 C 1.38351 * 120.30594 * 359.97438 * 16 15 14 18 18 C 1.37962 * 120.15175 * 0.02562 * 17 16 15 19 19 C 1.50695 * 120.07515 * 179.97438 * 18 17 16 20 20 S 1.81401 * 109.47417 * 85.14175 * 19 18 17 21 21 C 1.76196 * 103.00096 * 179.97438 * 20 19 18 22 22 N 1.33689 * 125.61441 * 179.97438 * 21 20 19 23 23 C 1.30870 * 109.77061 * 180.02562 * 22 21 20 24 24 N 1.34350 * 108.22176 * 359.97438 * 23 22 21 25 25 H 0.97000 * 126.75428 * 179.97438 * 24 23 22 26 26 N 1.31245 * 125.61782 * 359.69529 * 21 20 19 27 27 H 1.09002 * 109.46631 * 185.40498 * 1 2 3 28 28 H 1.08995 * 109.47681 * 305.40858 * 1 2 3 29 29 H 1.09005 * 109.47181 * 65.41312 * 1 2 3 30 30 H 0.97002 * 119.99849 * 180.02562 * 6 5 3 31 31 H 1.08007 * 120.07980 * 0.02562 * 14 13 11 32 32 H 1.07999 * 119.92268 * 179.76891 * 15 14 13 33 33 H 1.07996 * 119.84206 * 180.02562 * 16 15 14 34 34 H 1.07997 * 119.92556 * 180.02562 * 17 16 15 35 35 H 1.08999 * 109.47288 * 325.14364 * 19 18 17 36 36 H 1.09004 * 109.47076 * 205.14470 * 19 18 17 37 37 H 1.08000 * 125.89069 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1855 0.0000 4 1 3.2204 1.1906 0.1385 5 6 1.4655 2.3830 -0.1782 6 7 0.1532 2.3876 -0.2365 7 14 2.4130 3.9851 -0.3351 8 1 3.3194 3.9114 -1.5090 9 1 1.4591 5.1087 -0.5166 10 1 3.2139 4.2091 0.8953 11 6 2.1390 -1.1671 0.0005 12 8 3.3499 -1.1699 0.1104 13 6 1.4065 -2.4430 -0.1324 14 6 0.4704 -2.6113 -1.1552 15 6 -0.2141 -3.8032 -1.2699 16 6 0.0287 -4.8329 -0.3776 17 6 0.9587 -4.6750 0.6344 18 6 1.6505 -3.4881 0.7608 19 6 2.6627 -3.3178 1.8642 20 16 4.2613 -3.9857 1.3267 21 6 5.2989 -3.7017 2.7221 22 7 6.5925 -4.0278 2.8096 23 6 7.0592 -3.6768 3.9808 24 7 6.0607 -3.1098 4.6783 25 1 6.1112 -2.7538 5.5792 26 7 4.9306 -3.1304 3.8449 27 1 -0.3633 -1.0231 0.0968 28 1 -0.3634 0.5954 0.8375 29 1 -0.3634 0.4276 -0.9345 30 1 -0.3238 3.2229 -0.3612 31 1 0.2800 -1.8086 -1.8522 32 1 -0.9409 -3.9333 -2.0581 33 1 -0.5098 -5.7642 -0.4724 34 1 1.1435 -5.4827 1.3271 35 1 2.3256 -3.8524 2.7522 36 1 2.7713 -2.2585 2.0972 37 1 8.0724 -3.8185 4.3270 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348671632.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:03 Heat of formation + Delta-G solvation = 102.147650 kcal Electronic energy + Delta-G solvation = -23637.467520 eV Core-core repulsion = 20122.930777 eV Total energy + Delta-G solvation = -3514.536744 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.88828 -39.62364 -37.48385 -34.78114 -32.56408 -32.45975 -31.81023 -31.18753 -30.47829 -27.00960 -26.29193 -24.65156 -23.24602 -22.66862 -22.23358 -21.18885 -19.21542 -18.54752 -17.05393 -16.51295 -16.26959 -15.62299 -15.48984 -15.26498 -15.03865 -14.85082 -14.30917 -13.93300 -13.72271 -13.41966 -12.91830 -12.72087 -12.47838 -12.19068 -12.09850 -11.76908 -11.47345 -11.17911 -10.99686 -10.83016 -10.71591 -10.56349 -10.49857 -10.43313 -10.23960 -9.94727 -9.92536 -9.05138 -8.56546 -8.47415 -8.22351 -7.87391 -7.24556 -6.30081 -3.82733 1.06581 1.54445 1.58737 1.85808 2.49471 2.85440 3.02224 3.16165 3.21252 3.25962 3.77021 4.06944 4.25819 4.45822 4.80310 4.88918 4.98092 5.06278 5.14890 5.30627 5.39367 5.55614 5.78650 5.83392 5.85814 5.99822 6.20294 6.22494 6.30457 6.43566 6.65490 6.73003 6.85469 6.99335 7.08617 7.20511 7.38500 7.51502 7.93703 8.03673 8.45606 9.15086 9.39647 9.96201 10.63588 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.010414 B = 0.005005 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.051822 B = 5593.154382 C = 7835.443431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.434 5.434 3 C -0.296 4.296 4 H 0.105 0.895 5 C 0.028 3.972 6 N -0.883 5.883 7 Si 0.932 3.068 8 H -0.272 1.272 9 H -0.283 1.283 10 H -0.274 1.274 11 C 0.461 3.539 12 O -0.573 6.573 13 C -0.064 4.064 14 C -0.095 4.095 15 C -0.117 4.117 16 C -0.122 4.122 17 C -0.107 4.107 18 C -0.053 4.053 19 C -0.067 4.067 20 S 0.057 5.943 21 C 0.214 3.786 22 N -0.524 5.524 23 C 0.265 3.735 24 N -0.485 5.485 25 H 0.440 0.560 26 N -0.320 5.320 27 H 0.029 0.971 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.267 0.733 31 H 0.129 0.871 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.141 -12.464 6.164 14.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.151 5.151 3 C -0.424 4.424 4 H 0.123 0.877 5 C -0.175 4.175 6 N -0.523 5.523 7 Si 0.759 3.241 8 H -0.197 1.197 9 H -0.208 1.208 10 H -0.199 1.199 11 C 0.249 3.751 12 O -0.458 6.458 13 C -0.069 4.069 14 C -0.114 4.114 15 C -0.136 4.136 16 C -0.141 4.141 17 C -0.127 4.127 18 C -0.056 4.056 19 C -0.215 4.215 20 S 0.287 5.713 21 C -0.176 4.176 22 N -0.253 5.253 23 C -0.036 4.036 24 N -0.204 5.204 25 H 0.285 0.715 26 N -0.154 5.154 27 H 0.047 0.953 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.147 0.853 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.110 0.890 36 H 0.128 0.872 37 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 2.363 -12.653 5.056 13.830 hybrid contribution 0.230 1.836 1.904 2.655 sum 2.593 -10.818 6.960 13.122 Atomic orbital electron populations 1.21938 0.80202 0.96926 1.04295 1.43657 1.06157 1.04667 1.60597 1.19788 0.94030 0.82304 1.46257 0.87679 1.25361 0.95794 0.99772 0.96551 1.70147 1.06072 1.27569 1.48524 0.85894 0.78869 0.80132 0.79222 1.19720 1.20832 1.19896 1.17812 0.87515 0.82894 0.86846 1.90694 1.12979 1.86301 1.55864 1.20228 0.96001 0.95518 0.95188 1.21397 0.94781 0.97674 0.97508 1.21091 0.99897 0.93347 0.99308 1.21091 0.98541 0.98925 0.95534 1.20907 0.96694 0.96283 0.98836 1.19096 0.96660 0.94021 0.95837 1.22466 0.93140 1.06983 0.98890 1.85737 1.01769 1.72706 1.11054 1.26377 0.94849 0.98275 0.98081 1.70607 1.08249 1.27168 1.19322 1.26119 0.96398 0.92978 0.88132 1.47976 1.07837 1.47883 1.16706 0.71505 1.78436 1.07392 1.26591 1.02978 0.95263 0.91227 0.91316 0.92194 0.85267 0.85910 0.86062 0.85770 0.89044 0.87225 0.75999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.51 7.78 59.85 0.47 2.98 16 2 N -0.43 -11.19 3.02 -123.32 -0.37 -11.57 16 3 C -0.30 -8.23 9.55 -15.00 -0.14 -8.37 16 4 H 0.11 3.07 7.19 -52.49 -0.38 2.70 16 5 C 0.03 0.72 5.46 -17.45 -0.10 0.63 16 6 N -0.88 -22.88 9.47 55.50 0.53 -22.36 16 7 Si 0.93 20.80 29.56 -169.99 -5.02 15.77 16 8 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 9 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 10 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 11 C 0.46 11.42 6.19 -12.39 -0.08 11.34 16 12 O -0.57 -15.79 14.76 5.29 0.08 -15.71 16 13 C -0.06 -1.29 4.74 -104.97 -0.50 -1.78 16 14 C -0.09 -1.64 7.57 -39.16 -0.30 -1.94 16 15 C -0.12 -1.63 10.03 -39.64 -0.40 -2.03 16 16 C -0.12 -1.58 10.04 -39.48 -0.40 -1.97 16 17 C -0.11 -1.54 9.71 -39.64 -0.38 -1.92 16 18 C -0.05 -0.94 5.17 -104.21 -0.54 -1.48 16 19 C -0.07 -1.21 4.93 36.00 0.18 -1.04 16 20 S 0.06 1.05 21.66 -107.50 -2.33 -1.28 16 21 C 0.21 3.89 8.28 -90.97 -0.75 3.14 16 22 N -0.52 -8.56 11.21 -14.81 -0.17 -8.72 16 23 C 0.26 2.95 13.12 -90.69 -1.19 1.76 16 24 N -0.49 -5.71 7.43 29.52 0.22 -5.49 16 25 H 0.44 3.24 8.96 -182.34 -1.63 1.61 16 26 N -0.32 -5.48 12.36 30.13 0.37 -5.10 16 27 H 0.03 0.58 5.06 -51.93 -0.26 0.32 16 28 H 0.07 1.70 7.07 -51.93 -0.37 1.33 16 29 H 0.07 1.62 7.04 -51.93 -0.37 1.26 16 30 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 31 H 0.13 2.26 7.45 -52.48 -0.39 1.87 16 32 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.09 1.44 8.12 -51.92 -0.42 1.02 16 36 H 0.11 2.38 6.44 -51.92 -0.33 2.04 16 37 H 0.22 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 331.20 15.07 4.99 4.99 Total: -1.00 -34.66 331.20 -10.81 -45.47 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -4.98 Total: 4.67 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -4.13 Total: -0.69 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: 0.58 Total: -53.23 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: 0.08 Total: -15.71 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.33 Total: -1.28 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.66 -10.81 -45.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348671632.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.617 kcal (2) G-P(sol) polarization free energy of solvation -34.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds