Wall clock time and date at job start Tue Mar 31 2020 12:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46498 * 119.99806 * 2 1 4 4 S 1.65595 * 120.00130 * 179.97438 * 2 1 3 5 5 O 1.42100 * 106.40246 * 336.46085 * 4 2 1 6 6 O 1.42101 * 106.40432 * 203.54533 * 4 2 1 7 7 N 1.65595 * 107.22093 * 90.00159 * 4 2 1 8 8 C 1.36936 * 120.00083 * 275.20730 * 7 4 2 9 9 H 1.07999 * 119.99661 * 326.53840 * 8 7 4 10 10 C 1.38811 * 120.00157 * 146.54702 * 8 7 4 11 11 N 1.31620 * 119.99803 * 336.28418 * 10 8 7 12 12 Si 1.86795 * 120.00117 * 156.29266 * 10 8 7 13 13 H 1.48503 * 109.47357 * 89.99371 * 12 10 8 14 14 H 1.48500 * 109.47384 * 209.99753 * 12 10 8 15 15 H 1.48504 * 109.47185 * 329.99508 * 12 10 8 16 16 C 1.46503 * 119.99808 * 95.19470 * 7 4 2 17 17 C 1.53007 * 109.46589 * 95.00672 * 16 7 4 18 18 C 1.52999 * 109.46695 * 180.02562 * 17 16 7 19 19 C 1.50704 * 109.46600 * 180.02562 * 18 17 16 20 20 C 1.38423 * 122.53674 * 269.99862 * 19 18 17 21 21 C 1.33391 * 114.92177 * 180.02562 * 20 19 18 22 22 S 1.75886 * 109.59212 * 359.75450 * 21 20 19 23 23 C 1.33388 * 122.54273 * 90.02492 * 19 18 17 24 24 H 1.08997 * 109.47580 * 270.00406 * 1 2 3 25 25 H 1.09002 * 109.47218 * 30.00670 * 1 2 3 26 26 H 1.09006 * 109.47076 * 150.00181 * 1 2 3 27 27 H 1.09003 * 109.46969 * 179.97438 * 3 2 1 28 28 H 1.09005 * 109.46973 * 299.99069 * 3 2 1 29 29 H 1.09003 * 109.47460 * 59.99288 * 3 2 1 30 30 H 0.97001 * 119.99678 * 180.02562 * 11 10 8 31 31 H 1.08992 * 109.47333 * 335.00506 * 16 7 4 32 32 H 1.08995 * 109.47102 * 214.99989 * 16 7 4 33 33 H 1.09000 * 109.47318 * 60.00208 * 17 16 7 34 34 H 1.09000 * 109.46892 * 299.99962 * 17 16 7 35 35 H 1.08991 * 109.47672 * 60.00192 * 18 17 16 36 36 H 1.09000 * 109.47358 * 299.99602 * 18 17 16 37 37 H 1.08004 * 122.54153 * 0.04036 * 20 19 18 38 38 H 1.07995 * 125.20533 * 180.02562 * 21 20 19 39 39 H 1.08000 * 125.20130 * 359.95286 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 16 2.2930 -1.4341 0.0006 5 8 1.4113 -2.4062 0.5455 6 8 3.5759 -1.1565 0.5451 7 7 2.5382 -1.8593 -1.5809 8 6 1.5654 -2.5367 -2.2665 9 1 0.9331 -3.2434 -1.7496 10 6 1.3920 -2.3151 -3.6258 11 7 1.7920 -1.1826 -4.1642 12 14 0.5910 -3.6240 -4.6908 13 1 -0.8778 -3.4072 -4.7209 14 1 1.1323 -3.5387 -6.0710 15 1 0.8817 -4.9669 -4.1273 16 6 3.7957 -1.5106 -2.2466 17 6 4.7634 -2.6927 -2.1599 18 6 6.0770 -2.3283 -2.8546 19 6 7.0299 -3.4928 -2.7697 20 6 7.9182 -3.6528 -1.7203 21 6 8.6913 -4.7370 -1.7986 22 16 8.3018 -5.6347 -3.2602 23 6 7.0815 -4.4470 -3.7002 24 1 -0.3634 0.0001 1.0276 25 1 -0.3634 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 3.2691 1.0696 0.0005 28 1 1.9342 1.8402 -0.8901 29 1 1.9340 1.8404 0.8899 30 1 1.6705 -1.0276 -5.1140 31 1 4.2375 -0.6427 -1.7572 32 1 3.6002 -1.2773 -3.2932 33 1 4.3217 -3.5606 -2.6494 34 1 4.9589 -2.9261 -1.1133 35 1 6.5186 -1.4606 -2.3648 36 1 5.8819 -2.0946 -3.9012 37 1 7.9806 -2.9530 -0.9000 38 1 9.4387 -5.0225 -1.0733 39 1 6.4649 -4.4868 -4.5861 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352046225.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:07 Heat of formation + Delta-G solvation = -40.729942 kcal Electronic energy + Delta-G solvation = -23259.436655 eV Core-core repulsion = 19841.855474 eV Total energy + Delta-G solvation = -3417.581181 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -38.28282 -36.13496 -35.94349 -35.09284 -34.52151 -32.77826 -31.22070 -29.03736 -27.37055 -26.15835 -24.30349 -23.62028 -22.55955 -20.80323 -18.52193 -18.44894 -17.46019 -17.31290 -16.43141 -16.26307 -15.23667 -15.04695 -14.73972 -14.08774 -13.80910 -13.65359 -13.41333 -13.11664 -12.83337 -12.47063 -12.39705 -12.21233 -11.91775 -11.79887 -11.71364 -11.56951 -11.49287 -11.05181 -10.94330 -10.90275 -10.70200 -10.66045 -10.61082 -10.50584 -10.40307 -10.15356 -9.71924 -9.20009 -8.63514 -8.20158 -8.19209 -7.78728 -6.46975 -4.06865 1.17037 1.81523 1.90627 2.12918 2.91425 3.10846 3.18964 3.27389 3.96794 4.25511 4.76136 4.80342 5.05274 5.26923 5.54654 5.58045 5.59887 5.62964 5.80508 5.92420 5.96518 6.02706 6.09593 6.17798 6.20937 6.21781 6.29794 6.42680 6.52956 6.54831 6.68348 6.77416 6.79872 6.92494 7.28381 7.29443 7.42787 7.67406 8.36194 8.82018 9.26379 10.49877 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.012943 B = 0.004796 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.761924 B = 5837.271247 C = 7229.558151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -1.019 6.019 3 C 0.098 3.902 4 S 2.678 3.322 5 O -1.002 7.002 6 O -1.021 7.021 7 N -0.823 5.823 8 C -0.270 4.270 9 H 0.101 0.899 10 C 0.042 3.958 11 N -0.838 5.838 12 Si 0.912 3.088 13 H -0.275 1.275 14 H -0.281 1.281 15 H -0.266 1.266 16 C 0.125 3.875 17 C -0.122 4.122 18 C -0.058 4.058 19 C -0.088 4.088 20 C -0.124 4.124 21 C -0.216 4.216 22 S 0.064 5.936 23 C -0.210 4.210 24 H 0.034 0.966 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.049 0.951 29 H 0.041 0.959 30 H 0.270 0.730 31 H 0.049 0.951 32 H 0.111 0.889 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.141 0.859 38 H 0.160 0.840 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.515 -0.254 -0.947 7.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.854 5.854 3 C -0.048 4.048 4 S 2.701 3.299 5 O -0.986 6.986 6 O -1.005 7.005 7 N -0.652 5.652 8 C -0.412 4.412 9 H 0.119 0.881 10 C -0.169 4.169 11 N -0.477 5.477 12 Si 0.738 3.262 13 H -0.201 1.201 14 H -0.206 1.206 15 H -0.190 1.190 16 C -0.003 4.003 17 C -0.162 4.162 18 C -0.099 4.099 19 C -0.100 4.100 20 C -0.155 4.155 21 C -0.351 4.351 22 S 0.327 5.673 23 C -0.345 4.345 24 H 0.053 0.947 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.128 0.872 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.159 0.841 38 H 0.178 0.822 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 8.369 -1.872 -0.753 8.609 hybrid contribution -1.107 1.074 -0.170 1.552 sum 7.262 -0.798 -0.924 7.364 Atomic orbital electron populations 1.21186 0.80493 1.02517 0.99703 1.58653 1.14211 1.22363 1.90146 1.21256 0.96831 0.86636 1.00121 1.07729 0.72225 0.73050 0.76909 1.93408 1.66761 1.59294 1.79147 1.93383 1.41885 1.85372 1.79862 1.53577 1.19145 1.61747 1.30724 1.19477 1.13870 1.15964 0.91929 0.88107 1.25521 0.96665 0.96019 0.98709 1.69969 1.43144 1.21210 1.13374 0.86162 0.79364 0.81725 0.78966 1.20079 1.20638 1.19035 1.21298 0.82168 0.94221 1.02587 1.21929 0.93415 1.00695 1.00196 1.20324 0.93749 0.94065 1.01781 1.19118 0.98394 0.98411 0.94108 1.20214 0.96545 0.98781 0.99966 1.25511 1.06893 1.00349 1.02333 1.84083 1.35547 1.28378 1.19279 1.25447 1.04860 0.98863 1.05305 0.94723 0.92686 0.90933 0.90722 0.93240 0.94070 0.91953 0.93243 0.87179 0.91373 0.92635 0.91042 0.90896 0.84127 0.82194 0.81916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.00 10.33 59.85 0.62 2.62 16 2 N -1.02 -21.05 3.64 -129.20 -0.47 -21.53 16 3 C 0.10 1.72 10.67 59.85 0.64 2.36 16 4 S 2.68 63.61 5.98 -107.50 -0.64 62.97 16 5 O -1.00 -26.30 16.20 -57.17 -0.93 -27.23 16 6 O -1.02 -25.06 15.50 -57.17 -0.89 -25.94 16 7 N -0.82 -19.52 2.90 -59.91 -0.17 -19.69 16 8 C -0.27 -6.67 9.17 -15.06 -0.14 -6.80 16 9 H 0.10 2.57 7.45 -52.49 -0.39 2.17 16 10 C 0.04 0.98 4.98 -17.43 -0.09 0.90 16 11 N -0.84 -20.01 11.27 55.49 0.63 -19.38 16 12 Si 0.91 18.71 29.61 -169.99 -5.03 13.67 16 13 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 14 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 15 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 16 C 0.12 2.68 4.97 -4.04 -0.02 2.66 16 17 C -0.12 -2.37 5.49 -26.73 -0.15 -2.52 16 18 C -0.06 -0.92 5.47 -27.88 -0.15 -1.08 16 19 C -0.09 -1.32 5.05 -106.25 -0.54 -1.86 16 20 C -0.12 -1.73 9.98 -41.21 -0.41 -2.14 16 21 C -0.22 -2.67 11.23 29.04 0.33 -2.34 16 22 S 0.06 0.79 23.34 -107.50 -2.51 -1.72 16 23 C -0.21 -2.94 10.98 29.04 0.32 -2.62 16 24 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.89 8.07 -51.93 -0.42 0.47 16 26 H 0.07 1.44 7.79 -51.93 -0.40 1.04 16 27 H 0.07 1.33 6.91 -51.93 -0.36 0.97 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.27 6.09 8.31 -40.82 -0.34 5.75 16 31 H 0.05 1.02 7.46 -51.93 -0.39 0.63 16 32 H 0.11 2.48 5.30 -51.93 -0.28 2.20 16 33 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 34 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.07 1.06 8.13 -51.93 -0.42 0.64 16 36 H 0.07 1.10 8.12 -51.93 -0.42 0.68 16 37 H 0.14 1.81 8.06 -52.48 -0.42 1.38 16 38 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.16 2.10 8.06 -52.49 -0.42 1.67 16 LS Contribution 350.54 15.07 5.28 5.28 Total: -1.00 -28.93 350.54 -9.92 -38.85 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -5.60 Total: 5.54 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: 0.41 Total: -10.83 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: -0.02 Total: -60.59 kcal Atomic # 8 Polarization: -51.36 SS G_CDS: -1.81 Total: -53.17 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.67 kcal Atomic # 16 Polarization: 64.40 SS G_CDS: -3.15 Total: 61.25 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.93 -9.92 -38.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352046225.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.880 kcal (2) G-P(sol) polarization free energy of solvation -28.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds