Wall clock time and date at job start Tue Mar 31 2020 12:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46495 * 109.47557 * 2 1 4 4 C 1.46503 * 120.00066 * 262.86486 * 3 2 1 5 5 C 1.50702 * 109.46668 * 269.99778 * 4 3 2 6 6 H 1.08001 * 120.00252 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99680 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99640 * 179.97438 * 7 5 4 9 9 Si 1.86791 * 120.00253 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47333 * 89.99917 * 9 7 5 11 11 H 1.48498 * 109.47381 * 210.00462 * 9 7 5 12 12 H 1.48498 * 109.47232 * 330.00314 * 9 7 5 13 13 C 1.34779 * 119.99983 * 82.85556 * 3 2 1 14 14 O 1.21508 * 119.99944 * 183.59745 * 13 3 2 15 15 C 1.48216 * 119.99995 * 3.60210 * 13 3 2 16 16 N 1.31927 * 119.25359 * 353.53192 * 15 13 3 17 17 C 1.33224 * 121.32175 * 180.02562 * 16 15 13 18 18 C 1.40840 * 120.97086 * 179.97438 * 17 16 15 19 19 C 1.35986 * 119.74085 * 180.02562 * 18 17 16 20 20 C 1.39453 * 121.09186 * 359.97438 * 19 18 17 21 21 C 1.36119 * 120.92096 * 0.02562 * 20 19 18 22 22 C 1.40456 * 119.64935 * 359.96259 * 21 20 19 23 23 C 1.40661 * 121.26830 * 180.02562 * 22 21 20 24 24 C 1.36680 * 118.24122 * 180.29906 * 23 22 21 25 25 Cl 1.73605 * 120.11109 * 179.72618 * 24 23 22 26 26 H 1.08998 * 109.47482 * 59.99920 * 1 2 3 27 27 H 1.09004 * 109.47458 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46708 * 299.99823 * 1 2 3 29 29 H 1.09003 * 109.46613 * 239.99630 * 2 1 3 30 30 H 1.08999 * 109.47170 * 120.00791 * 2 1 3 31 31 H 1.08999 * 109.47371 * 29.99220 * 4 3 2 32 32 H 1.09000 * 109.47281 * 149.99523 * 4 3 2 33 33 H 0.97001 * 119.99669 * 179.97438 * 8 7 5 34 34 H 1.08003 * 120.13259 * 0.04000 * 18 17 16 35 35 H 1.07992 * 119.45356 * 180.02562 * 19 18 17 36 36 H 1.07991 * 119.54084 * 179.97438 * 20 19 18 37 37 H 1.08000 * 120.17264 * 179.97438 * 21 20 19 38 38 H 1.08003 * 120.88250 * 0.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.4112 2.0192 -1.2589 5 6 3.8751 1.7679 -1.5140 6 1 4.4549 1.1911 -0.8087 7 6 4.4744 2.2754 -2.6473 8 7 5.7520 2.0566 -2.8696 9 14 3.4718 3.2738 -3.8668 10 1 3.5277 4.7104 -3.4950 11 1 4.0294 3.0934 -5.2312 12 1 2.0608 2.8112 -3.8437 13 6 2.1062 2.0649 1.1582 14 8 2.4489 3.2306 1.1510 15 6 1.7850 1.3947 2.4405 16 7 1.2922 0.1711 2.4228 17 6 0.9884 -0.4696 3.5507 18 6 0.4621 -1.7757 3.5231 19 6 0.1603 -2.4062 4.6895 20 6 0.3635 -1.7811 5.9195 21 6 0.8701 -0.5196 5.9877 22 6 1.1943 0.1640 4.8043 23 6 1.7202 1.4682 4.8352 24 6 2.0080 2.0778 3.6462 25 17 2.6523 3.6898 3.6275 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.8232 1.6023 -2.0766 32 1 2.2327 3.0925 -1.1935 33 1 6.1736 2.4133 -3.6671 34 1 0.2991 -2.2747 2.5792 35 1 -0.2426 -3.4078 4.6630 36 1 0.1146 -2.3049 6.8305 37 1 1.0221 -0.0468 6.9468 38 1 1.8881 1.9762 5.7734 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354907041.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:42 Heat of formation + Delta-G solvation = 48.232500 kcal Electronic energy + Delta-G solvation = -24146.917305 eV Core-core repulsion = 20595.706167 eV Total energy + Delta-G solvation = -3551.211137 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.21729 -39.09396 -37.12118 -36.33183 -35.35316 -33.66042 -32.61101 -30.84048 -30.24698 -30.07164 -27.74434 -25.25186 -23.88164 -22.82325 -22.43682 -22.27536 -19.42923 -18.23324 -17.77943 -16.95723 -16.79250 -15.64368 -15.50762 -15.12682 -14.94773 -14.63189 -14.22556 -14.02238 -13.88557 -13.60027 -13.20529 -13.04426 -12.54110 -12.31537 -12.11071 -11.97566 -11.85128 -11.72193 -11.64582 -11.36010 -11.08623 -10.86558 -10.58823 -10.46872 -10.35806 -10.13011 -9.57925 -9.45105 -8.84231 -8.73716 -8.55158 -8.44757 -7.63547 -6.05261 -4.04004 0.00498 0.39799 1.68578 2.15189 2.37327 3.32396 3.38070 3.40402 3.46585 3.58007 4.00707 4.07856 4.29522 4.42978 4.48775 4.60804 4.63299 4.83798 4.91537 5.10222 5.27881 5.44083 5.48678 5.55227 5.65281 5.72780 5.87356 5.95730 6.02209 6.10041 6.13403 6.32401 6.44304 6.48962 6.71448 6.83875 6.97834 7.37208 7.53128 7.63621 8.23890 8.49165 8.87757 8.99458 9.54725 11.08100 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.017404 B = 0.004310 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.484799 B = 6495.155644 C = 7525.617330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.098 3.902 3 N -0.565 5.565 4 C 0.215 3.785 5 C -0.528 4.528 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.875 3.125 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.265 1.265 13 C 0.549 3.451 14 O -0.512 6.512 15 C 0.137 3.863 16 N -0.414 5.414 17 C 0.115 3.885 18 C -0.081 4.081 19 C -0.105 4.105 20 C -0.110 4.110 21 C -0.098 4.098 22 C -0.083 4.083 23 C -0.063 4.063 24 C -0.046 4.046 25 Cl -0.013 7.013 26 H 0.047 0.953 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.033 0.967 32 H 0.039 0.961 33 H 0.264 0.736 34 H 0.141 0.859 35 H 0.131 0.869 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.448 -8.378 18.334 24.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 N -0.295 5.295 4 C 0.094 3.906 5 C -0.566 4.566 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.536 5.536 9 Si 0.702 3.298 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.190 1.190 13 C 0.333 3.667 14 O -0.387 6.387 15 C -0.017 4.017 16 N -0.126 5.126 17 C -0.008 4.008 18 C -0.100 4.100 19 C -0.125 4.125 20 C -0.128 4.128 21 C -0.117 4.117 22 C -0.085 4.085 23 C -0.090 4.090 24 C -0.077 4.077 25 Cl 0.017 6.983 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.123 0.877 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.158 0.842 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.150 0.850 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -13.215 -8.048 17.365 23.258 hybrid contribution -0.117 0.939 0.114 0.953 sum -13.332 -7.109 17.479 23.104 Atomic orbital electron populations 1.22035 0.96823 1.01017 1.01055 1.21990 0.93560 0.83089 1.03856 1.47859 1.60661 1.13732 1.07230 1.19760 0.96517 0.94259 0.80042 1.21315 0.92714 1.34812 1.07784 0.90702 1.24837 0.94796 0.95623 0.97639 1.69901 1.10406 1.45739 1.27535 0.86859 0.80807 0.81409 0.80697 1.19869 1.21098 1.19001 1.17668 0.80095 0.86346 0.82593 1.90850 1.47005 1.15225 1.85612 1.21758 0.95407 0.90122 0.94450 1.68813 1.09602 1.06613 1.27575 1.19183 0.98198 0.95381 0.88034 1.20890 0.97404 0.92108 0.99551 1.20937 0.99274 1.00318 0.92004 1.20973 0.98579 0.95016 0.98209 1.20965 0.98792 0.95098 0.96858 1.18857 1.00388 0.94397 0.94890 1.21367 0.96441 0.93540 0.97622 1.21593 1.01128 0.90660 0.94270 1.98438 1.83529 1.17708 1.98653 0.93435 0.92476 0.93026 0.90897 0.87719 0.94913 0.94289 0.92584 0.84166 0.85074 0.85373 0.85013 0.83022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.59 37.16 0.36 -1.87 16 2 C 0.10 1.75 5.70 -4.05 -0.02 1.72 16 3 N -0.56 -12.38 2.47 -176.04 -0.44 -12.81 16 4 C 0.21 5.37 4.22 -5.19 -0.02 5.35 16 5 C -0.53 -15.40 9.94 -34.44 -0.34 -15.74 16 6 H 0.07 2.40 8.06 -52.49 -0.42 1.98 16 7 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 8 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 9 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 10 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 13 C 0.55 11.98 7.58 -12.16 -0.09 11.89 16 14 O -0.51 -12.53 13.45 5.36 0.07 -12.46 16 15 C 0.14 2.44 6.55 -82.93 -0.54 1.90 16 16 N -0.41 -6.41 4.28 -7.52 -0.03 -6.44 16 17 C 0.11 1.48 6.61 -84.85 -0.56 0.92 16 18 C -0.08 -0.81 9.99 -39.41 -0.39 -1.20 16 19 C -0.11 -0.80 9.94 -39.94 -0.40 -1.19 16 20 C -0.11 -0.78 9.96 -39.89 -0.40 -1.18 16 21 C -0.10 -0.82 9.77 -39.51 -0.39 -1.20 16 22 C -0.08 -0.95 5.75 -106.72 -0.61 -1.57 16 23 C -0.06 -0.76 9.66 -39.23 -0.38 -1.14 16 24 C -0.05 -0.73 6.32 -39.35 -0.25 -0.98 16 25 Cl -0.01 -0.21 25.94 -51.86 -1.35 -1.56 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.78 6.81 -51.93 -0.35 0.43 16 29 H 0.07 1.32 8.02 -51.93 -0.42 0.90 16 30 H 0.11 1.79 5.19 -53.44 -0.28 1.51 16 31 H 0.03 0.78 7.13 -51.93 -0.37 0.41 16 32 H 0.04 1.03 6.80 -51.93 -0.35 0.68 16 33 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 34 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 35 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 36 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 37 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 38 H 0.15 1.32 8.06 -52.48 -0.42 0.90 16 LS Contribution 332.25 15.07 5.01 5.01 Total: -1.00 -34.08 332.25 -9.09 -43.17 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: -4.32 Total: -2.66 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -4.14 Total: -2.22 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: 0.31 Total: -46.42 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.07 Total: -12.46 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -1.35 Total: -1.56 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.08 -9.09 -43.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354907041.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.405 kcal (2) G-P(sol) polarization free energy of solvation -34.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds