Wall clock time and date at job start Tue Mar 31 2020 12:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46495 * 109.47557 * 2 1 4 4 C 1.46503 * 120.00066 * 262.86486 * 3 2 1 5 5 C 1.50702 * 109.46668 * 269.99778 * 4 3 2 6 6 H 1.08001 * 120.00252 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99680 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99640 * 179.97438 * 7 5 4 9 9 Si 1.86791 * 120.00253 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47333 * 89.99917 * 9 7 5 11 11 H 1.48498 * 109.47381 * 210.00462 * 9 7 5 12 12 H 1.48498 * 109.47232 * 330.00314 * 9 7 5 13 13 C 1.34779 * 119.99983 * 82.85556 * 3 2 1 14 14 O 1.21508 * 119.99944 * 183.59745 * 13 3 2 15 15 C 1.48216 * 119.99995 * 3.60210 * 13 3 2 16 16 N 1.31927 * 119.25359 * 353.53192 * 15 13 3 17 17 C 1.33224 * 121.32175 * 180.02562 * 16 15 13 18 18 C 1.40840 * 120.97086 * 179.97438 * 17 16 15 19 19 C 1.35986 * 119.74085 * 180.02562 * 18 17 16 20 20 C 1.39453 * 121.09186 * 359.97438 * 19 18 17 21 21 C 1.36119 * 120.92096 * 0.02562 * 20 19 18 22 22 C 1.40456 * 119.64935 * 359.96259 * 21 20 19 23 23 C 1.40661 * 121.26830 * 180.02562 * 22 21 20 24 24 C 1.36680 * 118.24122 * 180.29906 * 23 22 21 25 25 Cl 1.73605 * 120.11109 * 179.72618 * 24 23 22 26 26 H 1.08998 * 109.47482 * 59.99920 * 1 2 3 27 27 H 1.09004 * 109.47458 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46708 * 299.99823 * 1 2 3 29 29 H 1.09003 * 109.46613 * 239.99630 * 2 1 3 30 30 H 1.08999 * 109.47170 * 120.00791 * 2 1 3 31 31 H 1.08999 * 109.47371 * 29.99220 * 4 3 2 32 32 H 1.09000 * 109.47281 * 149.99523 * 4 3 2 33 33 H 0.97001 * 119.99669 * 179.97438 * 8 7 5 34 34 H 1.08003 * 120.13259 * 0.04000 * 18 17 16 35 35 H 1.07992 * 119.45356 * 180.02562 * 19 18 17 36 36 H 1.07991 * 119.54084 * 179.97438 * 20 19 18 37 37 H 1.08000 * 120.17264 * 179.97438 * 21 20 19 38 38 H 1.08003 * 120.88250 * 0.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.4112 2.0192 -1.2589 5 6 3.8751 1.7679 -1.5140 6 1 4.4549 1.1911 -0.8087 7 6 4.4744 2.2754 -2.6473 8 7 5.7520 2.0566 -2.8696 9 14 3.4718 3.2738 -3.8668 10 1 3.5277 4.7104 -3.4950 11 1 4.0294 3.0934 -5.2312 12 1 2.0608 2.8112 -3.8437 13 6 2.1062 2.0649 1.1582 14 8 2.4489 3.2306 1.1510 15 6 1.7850 1.3947 2.4405 16 7 1.2922 0.1711 2.4228 17 6 0.9884 -0.4696 3.5507 18 6 0.4621 -1.7757 3.5231 19 6 0.1603 -2.4062 4.6895 20 6 0.3635 -1.7811 5.9195 21 6 0.8701 -0.5196 5.9877 22 6 1.1943 0.1640 4.8043 23 6 1.7202 1.4682 4.8352 24 6 2.0080 2.0778 3.6462 25 17 2.6523 3.6898 3.6275 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.8232 1.6023 -2.0766 32 1 2.2327 3.0925 -1.1935 33 1 6.1736 2.4133 -3.6671 34 1 0.2991 -2.2747 2.5792 35 1 -0.2426 -3.4078 4.6630 36 1 0.1146 -2.3049 6.8305 37 1 1.0221 -0.0468 6.9468 38 1 1.8881 1.9762 5.7734 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354907041.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:42 Heat of formation + Delta-G solvation = 27.469425 kcal Electronic energy + Delta-G solvation = -24147.817659 eV Core-core repulsion = 20595.706167 eV Total energy + Delta-G solvation = -3552.111492 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -42.24927 -40.51583 -38.16706 -37.51326 -36.92606 -34.96310 -34.44308 -32.06775 -31.60592 -30.95003 -29.54240 -26.49448 -24.95681 -24.32390 -23.92569 -23.17040 -20.87691 -19.19951 -19.11300 -18.81428 -18.17200 -17.14869 -16.71692 -16.46284 -16.09995 -15.86130 -15.47004 -15.27410 -15.06130 -14.83793 -14.55400 -14.39363 -14.11733 -13.78002 -13.52677 -13.27257 -13.21345 -12.82686 -12.67655 -12.62017 -12.47678 -12.41332 -12.27425 -12.02759 -11.76275 -11.73348 -11.30963 -10.92612 -10.83539 -10.13444 -9.82860 -9.36763 -9.24958 -8.34598 -6.40121 -0.92989 -0.54683 0.87074 1.02488 1.32379 1.36315 1.36772 1.45463 2.04607 2.26112 2.30877 2.90906 2.98913 2.99964 3.46846 3.50312 3.60485 3.82456 4.06044 4.27296 4.29406 4.33765 4.52471 4.57695 4.63026 4.72229 4.76378 4.82111 4.91610 4.99220 5.05290 5.14915 5.28514 5.36366 5.41981 5.48093 5.54222 5.67090 5.83568 6.21691 6.43782 6.60169 6.62390 7.15846 7.30137 8.82562 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.017404 B = 0.004310 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.484799 B = 6495.155644 C = 7525.617330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.096 3.904 3 N -0.578 5.578 4 C 0.225 3.775 5 C -0.536 4.536 6 H 0.025 0.975 7 C 0.014 3.986 8 N -0.944 5.944 9 Si 0.948 3.052 10 H -0.274 1.274 11 H -0.272 1.272 12 H -0.239 1.239 13 C 0.540 3.460 14 O -0.554 6.554 15 C 0.103 3.897 16 N -0.417 5.417 17 C 0.092 3.908 18 C -0.101 4.101 19 C -0.086 4.086 20 C -0.094 4.094 21 C -0.101 4.101 22 C -0.089 4.089 23 C -0.043 4.043 24 C -0.072 4.072 25 Cl -0.037 7.037 26 H 0.041 0.959 27 H 0.090 0.910 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.112 0.888 31 H 0.051 0.949 32 H 0.024 0.976 33 H 0.269 0.731 34 H 0.148 0.852 35 H 0.167 0.833 36 H 0.169 0.831 37 H 0.164 0.836 38 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.457 -10.821 20.735 28.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.026 4.026 3 N -0.307 5.307 4 C 0.103 3.897 5 C -0.575 4.575 6 H 0.044 0.956 7 C -0.184 4.184 8 N -0.584 5.584 9 Si 0.771 3.229 10 H -0.200 1.200 11 H -0.197 1.197 12 H -0.163 1.163 13 C 0.326 3.674 14 O -0.431 6.431 15 C -0.050 4.050 16 N -0.130 5.130 17 C -0.031 4.031 18 C -0.119 4.119 19 C -0.106 4.106 20 C -0.112 4.112 21 C -0.119 4.119 22 C -0.091 4.091 23 C -0.069 4.069 24 C -0.102 4.102 25 Cl -0.008 7.008 26 H 0.061 0.939 27 H 0.109 0.891 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.129 0.871 31 H 0.068 0.932 32 H 0.042 0.958 33 H 0.078 0.922 34 H 0.166 0.834 35 H 0.184 0.816 36 H 0.186 0.814 37 H 0.182 0.818 38 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -16.249 -10.531 19.781 27.680 hybrid contribution 0.782 1.381 -0.342 1.624 sum -15.466 -9.149 19.439 26.472 Atomic orbital electron populations 1.21909 0.94117 1.02967 1.00469 1.22207 0.95689 0.80954 1.03706 1.47964 1.61120 1.15205 1.06451 1.19411 0.94000 0.93858 0.82383 1.21492 0.94731 1.34269 1.07003 0.95623 1.25826 0.95996 0.96717 0.99856 1.70052 1.12506 1.47211 1.28646 0.85706 0.80313 0.79029 0.77874 1.19976 1.19745 1.16254 1.18341 0.78966 0.86154 0.83914 1.90791 1.48740 1.17023 1.86593 1.21056 0.99380 0.91646 0.92890 1.68553 1.09241 1.05638 1.29528 1.19650 0.98994 0.96577 0.87900 1.21108 0.98376 0.91146 1.01291 1.21441 0.96547 1.01396 0.91186 1.21530 0.95794 0.94327 0.99540 1.21356 0.98199 0.95605 0.96740 1.19165 0.99994 0.94185 0.95770 1.21744 0.94126 0.93627 0.97398 1.21614 1.03573 0.90066 0.94953 1.98413 1.84183 1.19517 1.98702 0.93950 0.89126 0.93576 0.91818 0.87110 0.93160 0.95773 0.92179 0.83441 0.81555 0.81375 0.81829 0.79682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 9.59 71.98 0.69 -3.24 16 2 C 0.10 3.51 5.70 86.38 0.49 4.01 16 3 N -0.58 -26.64 2.47 -829.15 -2.05 -28.69 16 4 C 0.23 11.74 4.22 85.63 0.36 12.10 16 5 C -0.54 -33.08 9.94 25.60 0.25 -32.82 16 6 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 7 C 0.01 0.86 5.47 84.65 0.46 1.33 16 8 N -0.94 -61.22 13.96 21.45 0.30 -60.92 16 9 Si 0.95 45.85 27.47 68.60 1.88 47.73 16 10 H -0.27 -13.27 7.11 99.48 0.71 -12.56 16 11 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.24 -10.48 6.54 99.48 0.65 -9.83 16 13 C 0.54 25.14 7.58 86.90 0.66 25.80 16 14 O -0.55 -29.13 13.45 -3.74 -0.05 -29.18 16 15 C 0.10 3.84 6.55 42.30 0.28 4.11 16 16 N -0.42 -13.03 4.28 -177.71 -0.76 -13.79 16 17 C 0.09 2.23 6.61 40.49 0.27 2.49 16 18 C -0.10 -1.69 9.99 22.38 0.22 -1.47 16 19 C -0.09 -0.84 9.94 22.04 0.22 -0.62 16 20 C -0.09 -0.75 9.96 22.07 0.22 -0.53 16 21 C -0.10 -1.16 9.77 22.32 0.22 -0.95 16 22 C -0.09 -1.80 5.75 -21.22 -0.12 -1.93 16 23 C -0.04 -0.97 9.66 22.50 0.22 -0.75 16 24 C -0.07 -2.33 6.32 22.42 0.14 -2.19 16 25 Cl -0.04 -1.32 25.94 -2.72 -0.07 -1.39 16 26 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 28 H 0.05 1.39 6.81 -2.39 -0.02 1.37 16 29 H 0.06 2.37 8.02 -2.39 -0.02 2.36 16 30 H 0.11 3.91 5.19 -5.38 -0.03 3.88 16 31 H 0.05 2.42 7.13 -2.39 -0.02 2.40 16 32 H 0.02 1.33 6.80 -2.39 -0.02 1.31 16 33 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16 34 H 0.15 2.18 8.06 -2.91 -0.02 2.15 16 35 H 0.17 0.52 8.06 -2.91 -0.02 0.50 16 36 H 0.17 0.14 8.06 -2.92 -0.02 0.12 16 37 H 0.16 0.88 8.06 -2.91 -0.02 0.85 16 38 H 0.19 2.74 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -82.01 332.25 4.85 -77.16 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: 1.02 Total: 3.75 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: 4.58 Total: 5.34 kcal Atomic # 7 Polarization: -100.89 SS G_CDS: -2.51 Total: -103.41 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -0.05 Total: -29.18 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.88 Total: 47.73 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.07 Total: -1.39 kcal Total: -82.01 4.85 -77.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354907041.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.625 kcal (2) G-P(sol) polarization free energy of solvation -82.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds