Wall clock time and date at job start Tue Mar 31 2020 11:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46646 * 2 1 4 4 H 1.09004 * 109.46927 * 304.99797 * 3 2 1 5 5 C 1.50703 * 109.46927 * 185.00014 * 3 2 1 6 6 H 1.07995 * 120.00011 * 239.99484 * 5 3 2 7 7 C 1.37885 * 120.00002 * 59.99973 * 5 3 2 8 8 N 1.31508 * 119.99934 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99819 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47062 * 59.99842 * 9 7 5 11 11 H 1.48501 * 109.47130 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47222 * 300.00162 * 9 7 5 13 13 N 1.46498 * 109.47596 * 64.99966 * 3 2 1 14 14 C 1.34774 * 120.00154 * 275.00254 * 13 3 2 15 15 O 1.21510 * 119.99888 * 359.97438 * 14 13 3 16 16 C 1.48218 * 120.00374 * 179.97438 * 14 13 3 17 17 N 1.31925 * 119.25039 * 359.97438 * 16 14 13 18 18 C 1.33221 * 121.31603 * 180.02562 * 17 16 14 19 19 C 1.40846 * 120.96416 * 180.02562 * 18 17 16 20 20 C 1.35983 * 119.73903 * 179.74517 * 19 18 17 21 21 C 1.39452 * 121.09099 * 0.25213 * 20 19 18 22 22 C 1.36120 * 120.92295 * 0.02622 * 21 20 19 23 23 C 1.40456 * 119.64895 * 359.97328 * 22 21 20 24 24 C 1.40665 * 121.27087 * 180.02562 * 23 22 21 25 25 C 1.36687 * 118.23638 * 179.21973 * 24 23 22 26 26 Cl 1.73602 * 120.10766 * 180.22988 * 25 24 23 27 27 H 1.09002 * 109.46905 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47339 * 299.99658 * 1 2 3 29 29 H 1.08999 * 109.47384 * 60.00576 * 1 2 3 30 30 H 1.08996 * 109.47624 * 240.00205 * 2 1 3 31 31 H 1.08999 * 109.47384 * 119.99424 * 2 1 3 32 32 H 0.96997 * 119.99846 * 180.02562 * 8 7 5 33 33 H 0.97000 * 119.99808 * 94.99798 * 13 3 2 34 34 H 1.08002 * 120.13442 * 0.02719 * 19 18 17 35 35 H 1.07994 * 119.45571 * 180.28205 * 20 19 18 36 36 H 1.08003 * 119.54075 * 179.97438 * 21 20 19 37 37 H 1.07996 * 120.17442 * 179.97438 * 22 21 20 38 38 H 1.08004 * 120.87622 * 0.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8419 5 6 3.5418 1.4445 -0.1238 6 1 4.1471 1.8891 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8815 -1.3818 10 1 6.5975 0.1477 -0.2349 11 1 6.3978 0.2170 -2.6504 12 1 6.4993 2.2817 -1.3821 13 7 1.6523 2.0976 1.2517 14 6 0.4350 2.6644 1.3669 15 8 -0.3409 2.6325 0.4323 16 6 0.0426 3.3267 2.6335 17 7 0.8963 3.3522 3.6390 18 6 0.5864 3.9357 4.7958 19 6 1.5038 3.9591 5.8643 20 6 1.1634 4.5662 7.0325 21 6 -0.0855 5.1648 7.1957 22 6 -1.0014 5.1582 6.1888 23 6 -0.6863 4.5409 4.9671 24 6 -1.6067 4.5145 3.9036 25 6 -1.2293 3.9111 2.7366 26 17 -2.3247 3.8559 1.3909 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 3.8293 -0.0617 -2.9494 33 1 2.2718 2.1233 1.9977 34 1 2.4756 3.5008 5.7547 35 1 1.8721 4.5854 7.8472 36 1 -0.3298 5.6396 8.1345 37 1 -1.9651 5.6251 6.3284 38 1 -2.5808 4.9705 4.0022 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355814609.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:00 Heat of formation + Delta-G solvation = 17.284410 kcal Electronic energy + Delta-G solvation = -23720.850452 eV Core-core repulsion = 20168.297305 eV Total energy + Delta-G solvation = -3552.553147 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.10942 -39.00568 -37.18108 -36.26132 -35.01356 -33.69385 -32.32122 -31.19955 -30.38310 -30.07523 -27.04982 -25.22530 -23.83989 -22.91683 -22.37191 -20.88259 -19.34628 -18.42644 -17.99388 -17.55849 -16.22045 -15.41375 -15.24500 -15.14049 -14.99307 -14.65413 -14.20924 -14.05562 -13.98887 -13.49542 -13.07502 -12.64503 -12.54371 -12.00046 -11.97643 -11.86592 -11.59125 -11.38865 -11.22466 -11.13993 -10.88622 -10.78404 -10.41650 -10.29043 -10.13348 -10.02523 -9.57517 -9.02277 -8.84371 -8.80826 -8.47643 -8.45624 -7.77613 -6.08743 -4.17630 0.01450 0.39633 1.69225 2.13211 2.38404 3.29037 3.33872 3.35365 3.51372 3.69398 4.08099 4.12924 4.29103 4.38185 4.49387 4.61042 4.75454 4.88738 5.00373 5.22354 5.26234 5.44653 5.49260 5.64387 5.81864 6.01738 6.12614 6.17938 6.43502 6.50495 6.50687 6.69847 7.09023 7.22117 7.38361 7.45121 7.52005 7.66982 7.78579 7.93693 8.20647 8.68322 8.79106 9.10487 9.48982 10.96625 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.014763 B = 0.004026 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.174511 B = 6953.356168 C = 8417.186908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.052 0.948 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.680 5.680 14 C 0.544 3.456 15 O -0.517 6.517 16 C 0.138 3.862 17 N -0.428 5.428 18 C 0.123 3.877 19 C -0.081 4.081 20 C -0.106 4.106 21 C -0.109 4.109 22 C -0.099 4.099 23 C -0.084 4.084 24 C -0.064 4.064 25 C -0.048 4.048 26 Cl -0.013 7.013 27 H 0.022 0.978 28 H 0.037 0.963 29 H 0.051 0.949 30 H 0.100 0.900 31 H 0.031 0.969 32 H 0.265 0.735 33 H 0.398 0.602 34 H 0.141 0.859 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.133 0.867 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.728 8.931 17.954 21.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.070 0.930 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.328 5.328 14 C 0.325 3.675 15 O -0.393 6.393 16 C -0.018 4.018 17 N -0.139 5.139 18 C -0.001 4.001 19 C -0.099 4.099 20 C -0.126 4.126 21 C -0.127 4.127 22 C -0.118 4.118 23 C -0.087 4.087 24 C -0.090 4.090 25 C -0.078 4.078 26 Cl 0.016 6.984 27 H 0.042 0.958 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.119 0.881 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.232 0.768 34 H 0.159 0.841 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -8.475 8.393 16.889 20.676 hybrid contribution 0.376 0.388 0.351 0.644 sum -8.099 8.782 17.240 20.974 Atomic orbital electron populations 1.21842 0.98281 0.98099 1.01244 1.21939 0.92652 0.99625 1.02384 1.18883 0.94370 0.89262 0.80662 0.92980 1.21195 0.90620 1.39058 1.06322 0.92035 1.24865 0.98569 0.94791 0.95346 1.69880 1.35188 1.37570 1.09355 0.86513 0.84911 0.78310 0.77401 1.20154 1.21168 1.20193 1.46431 1.13882 1.53675 1.18813 1.17713 0.83990 0.80463 0.85307 1.90857 1.51007 1.59283 1.38141 1.21858 0.89345 0.95688 0.94899 1.68081 1.32264 1.14547 0.99037 1.18989 0.92487 0.96129 0.92491 1.20933 0.99282 0.98569 0.91158 1.20942 0.96827 0.97240 0.97541 1.20983 0.93668 0.98953 0.99128 1.20956 1.00099 0.98910 0.91814 1.18858 0.94503 1.00021 0.95308 1.21377 0.99988 0.97205 0.90444 1.21625 0.93253 1.01137 0.91833 1.98431 1.60270 1.96612 1.43050 0.95849 0.94373 0.92990 0.88149 0.94971 0.92530 0.76803 0.84070 0.85012 0.85317 0.84962 0.83023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.51 37.16 0.32 -2.78 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.27 16 3 C 0.27 6.86 2.24 -69.08 -0.15 6.70 16 4 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 5 C -0.53 -14.26 8.73 -34.44 -0.30 -14.56 16 6 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.73 11.29 55.43 0.63 -24.11 16 9 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 13 N -0.68 -14.94 5.01 -55.76 -0.28 -15.22 16 14 C 0.54 11.39 6.37 -12.16 -0.08 11.32 16 15 O -0.52 -11.76 10.99 5.36 0.06 -11.70 16 16 C 0.14 2.43 6.75 -82.93 -0.56 1.87 16 17 N -0.43 -7.01 9.47 -7.52 -0.07 -7.08 16 18 C 0.12 1.67 6.61 -84.85 -0.56 1.11 16 19 C -0.08 -0.88 9.99 -39.41 -0.39 -1.27 16 20 C -0.11 -0.86 9.94 -39.94 -0.40 -1.25 16 21 C -0.11 -0.81 9.96 -39.89 -0.40 -1.20 16 22 C -0.10 -0.84 9.77 -39.51 -0.39 -1.23 16 23 C -0.08 -0.99 5.75 -106.72 -0.61 -1.61 16 24 C -0.06 -0.76 9.66 -39.23 -0.38 -1.14 16 25 C -0.05 -0.74 6.32 -39.35 -0.25 -0.99 16 26 Cl -0.01 -0.20 25.92 -51.86 -1.34 -1.55 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.04 0.84 5.65 -51.93 -0.29 0.55 16 29 H 0.05 1.23 7.85 -51.93 -0.41 0.82 16 30 H 0.10 2.71 5.95 -51.93 -0.31 2.40 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.40 8.16 7.84 -40.82 -0.32 7.84 16 34 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 37 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.15 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 332.34 15.07 5.01 5.01 Total: -1.00 -30.13 332.34 -9.64 -39.77 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -4.22 Total: 5.69 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -4.39 Total: -6.57 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 0.28 Total: -46.41 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.06 Total: -11.70 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.34 Total: -1.55 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.13 -9.64 -39.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355814609.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.050 kcal (2) G-P(sol) polarization free energy of solvation -30.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds