Wall clock time and date at job start Tue Mar 31 2020 11:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46646 * 2 1 4 4 H 1.09004 * 109.46927 * 304.99797 * 3 2 1 5 5 C 1.50703 * 109.46927 * 185.00014 * 3 2 1 6 6 H 1.07995 * 120.00011 * 239.99484 * 5 3 2 7 7 C 1.37885 * 120.00002 * 59.99973 * 5 3 2 8 8 N 1.31508 * 119.99934 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99819 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47062 * 59.99842 * 9 7 5 11 11 H 1.48501 * 109.47130 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47222 * 300.00162 * 9 7 5 13 13 N 1.46498 * 109.47596 * 64.99966 * 3 2 1 14 14 C 1.34774 * 120.00154 * 275.00254 * 13 3 2 15 15 O 1.21510 * 119.99888 * 359.97438 * 14 13 3 16 16 C 1.48218 * 120.00374 * 179.97438 * 14 13 3 17 17 N 1.31925 * 119.25039 * 359.97438 * 16 14 13 18 18 C 1.33221 * 121.31603 * 180.02562 * 17 16 14 19 19 C 1.40846 * 120.96416 * 180.02562 * 18 17 16 20 20 C 1.35983 * 119.73903 * 179.74517 * 19 18 17 21 21 C 1.39452 * 121.09099 * 0.25213 * 20 19 18 22 22 C 1.36120 * 120.92295 * 0.02622 * 21 20 19 23 23 C 1.40456 * 119.64895 * 359.97328 * 22 21 20 24 24 C 1.40665 * 121.27087 * 180.02562 * 23 22 21 25 25 C 1.36687 * 118.23638 * 179.21973 * 24 23 22 26 26 Cl 1.73602 * 120.10766 * 180.22988 * 25 24 23 27 27 H 1.09002 * 109.46905 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47339 * 299.99658 * 1 2 3 29 29 H 1.08999 * 109.47384 * 60.00576 * 1 2 3 30 30 H 1.08996 * 109.47624 * 240.00205 * 2 1 3 31 31 H 1.08999 * 109.47384 * 119.99424 * 2 1 3 32 32 H 0.96997 * 119.99846 * 180.02562 * 8 7 5 33 33 H 0.97000 * 119.99808 * 94.99798 * 13 3 2 34 34 H 1.08002 * 120.13442 * 0.02719 * 19 18 17 35 35 H 1.07994 * 119.45571 * 180.28205 * 20 19 18 36 36 H 1.08003 * 119.54075 * 179.97438 * 21 20 19 37 37 H 1.07996 * 120.17442 * 179.97438 * 22 21 20 38 38 H 1.08004 * 120.87622 * 0.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8419 5 6 3.5418 1.4445 -0.1238 6 1 4.1471 1.8891 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8815 -1.3818 10 1 6.5975 0.1477 -0.2349 11 1 6.3978 0.2170 -2.6504 12 1 6.4993 2.2817 -1.3821 13 7 1.6523 2.0976 1.2517 14 6 0.4350 2.6644 1.3669 15 8 -0.3409 2.6325 0.4323 16 6 0.0426 3.3267 2.6335 17 7 0.8963 3.3522 3.6390 18 6 0.5864 3.9357 4.7958 19 6 1.5038 3.9591 5.8643 20 6 1.1634 4.5662 7.0325 21 6 -0.0855 5.1648 7.1957 22 6 -1.0014 5.1582 6.1888 23 6 -0.6863 4.5409 4.9671 24 6 -1.6067 4.5145 3.9036 25 6 -1.2293 3.9111 2.7366 26 17 -2.3247 3.8559 1.3909 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 3.8293 -0.0617 -2.9494 33 1 2.2718 2.1233 1.9977 34 1 2.4756 3.5008 5.7547 35 1 1.8721 4.5854 7.8472 36 1 -0.3298 5.6396 8.1345 37 1 -1.9651 5.6251 6.3284 38 1 -2.5808 4.9705 4.0022 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355814609.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:59 Heat of formation + Delta-G solvation = -1.037945 kcal Electronic energy + Delta-G solvation = -23721.644969 eV Core-core repulsion = 20168.297305 eV Total energy + Delta-G solvation = -3553.347664 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.12433 -40.52032 -38.24174 -37.34511 -36.88231 -34.70084 -34.19576 -32.88573 -31.55705 -30.95614 -28.97897 -26.44043 -25.06951 -24.54734 -23.17400 -22.47445 -21.20913 -19.74768 -19.12505 -18.55801 -17.94178 -17.15197 -16.58538 -16.42781 -16.15738 -15.84689 -15.50958 -15.33838 -15.05491 -14.64367 -14.55613 -14.26404 -13.88906 -13.54064 -13.34226 -13.17423 -12.94841 -12.68917 -12.66151 -12.62852 -12.53135 -12.34792 -12.13863 -12.03945 -11.57198 -11.34322 -11.18976 -11.04530 -10.54370 -10.28776 -9.85422 -9.58374 -9.29120 -8.15785 -6.32947 -0.93189 -0.55606 0.85053 1.02778 1.37214 1.44397 1.46559 1.54335 2.23353 2.28112 2.46678 2.98880 3.02920 3.13313 3.47448 3.53548 3.75004 3.81055 4.14144 4.25744 4.32215 4.49658 4.56932 4.58878 4.63976 4.75004 4.81956 5.02789 5.06871 5.25243 5.28034 5.33927 5.43460 5.45198 5.53898 5.60039 5.77978 5.81124 5.90449 6.15555 6.46428 6.72453 6.93911 7.30291 7.47378 8.89445 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.014763 B = 0.004026 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.174511 B = 6953.356168 C = 8417.186908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.119 4.119 3 C 0.279 3.721 4 H 0.006 0.994 5 C -0.552 4.552 6 H 0.066 0.934 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.970 3.030 10 H -0.266 1.266 11 H -0.283 1.283 12 H -0.273 1.273 13 N -0.685 5.685 14 C 0.542 3.458 15 O -0.543 6.543 16 C 0.106 3.894 17 N -0.446 5.446 18 C 0.097 3.903 19 C -0.108 4.108 20 C -0.085 4.085 21 C -0.095 4.095 22 C -0.097 4.097 23 C -0.091 4.091 24 C -0.042 4.042 25 C -0.071 4.071 26 Cl -0.030 7.030 27 H 0.045 0.955 28 H 0.038 0.962 29 H 0.032 0.968 30 H 0.076 0.924 31 H 0.036 0.964 32 H 0.266 0.734 33 H 0.404 0.596 34 H 0.140 0.860 35 H 0.166 0.834 36 H 0.171 0.829 37 H 0.169 0.831 38 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.832 10.521 22.127 26.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.158 4.158 3 C 0.176 3.824 4 H 0.024 0.976 5 C -0.590 4.590 6 H 0.084 0.916 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.794 3.206 10 H -0.190 1.190 11 H -0.208 1.208 12 H -0.198 1.198 13 N -0.334 5.334 14 C 0.326 3.674 15 O -0.420 6.420 16 C -0.048 4.048 17 N -0.158 5.158 18 C -0.027 4.027 19 C -0.127 4.127 20 C -0.104 4.104 21 C -0.113 4.113 22 C -0.116 4.116 23 C -0.093 4.093 24 C -0.068 4.068 25 C -0.101 4.101 26 Cl -0.001 7.001 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.095 0.905 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.239 0.761 34 H 0.158 0.842 35 H 0.184 0.816 36 H 0.189 0.811 37 H 0.186 0.814 38 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -8.588 9.992 21.085 24.863 hybrid contribution 0.396 0.025 -0.645 0.757 sum -8.192 10.017 20.440 24.192 Atomic orbital electron populations 1.21663 0.96787 0.99195 1.00288 1.21779 0.93893 0.98906 1.01241 1.18471 0.93789 0.89283 0.80814 0.97606 1.21506 0.91374 1.39309 1.06789 0.91618 1.25727 1.03319 0.94219 0.94852 1.70025 1.37095 1.38090 1.09792 0.85435 0.79084 0.78417 0.77627 1.19032 1.20825 1.19783 1.46207 1.14863 1.54481 1.17810 1.18223 0.83003 0.79649 0.86544 1.90821 1.51491 1.60039 1.39656 1.21210 0.91104 0.98458 0.93997 1.67928 1.32607 1.15331 0.99889 1.19466 0.94326 0.96788 0.92126 1.21103 0.99275 1.00517 0.91777 1.21431 0.97750 0.94358 0.96884 1.21543 0.92484 0.97005 1.00260 1.21390 1.01985 0.97953 0.90241 1.19174 0.93554 0.99884 0.96684 1.21784 1.01238 0.94952 0.88784 1.21617 0.92464 1.03259 0.92778 1.98412 1.60508 1.96887 1.44289 0.93554 0.94297 0.94912 0.90534 0.94538 0.92480 0.76144 0.84218 0.81644 0.81113 0.81375 0.79319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 8.51 71.98 0.61 -5.12 16 2 C -0.12 -6.14 5.45 30.60 0.17 -5.98 16 3 C 0.28 15.06 2.24 44.25 0.10 15.16 16 4 H 0.01 0.38 7.58 -2.38 -0.02 0.36 16 5 C -0.55 -30.58 8.73 25.60 0.22 -30.36 16 6 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 7 C 0.02 1.06 5.29 84.66 0.45 1.51 16 8 N -0.91 -52.97 11.29 21.45 0.24 -52.73 16 9 Si 0.97 43.22 29.54 68.60 2.03 45.24 16 10 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 13 N -0.69 -31.96 5.01 -448.61 -2.25 -34.21 16 14 C 0.54 24.16 6.37 86.90 0.55 24.71 16 15 O -0.54 -26.39 10.99 -3.75 -0.04 -26.43 16 16 C 0.11 3.91 6.75 42.30 0.29 4.20 16 17 N -0.45 -15.02 9.47 -177.71 -1.68 -16.70 16 18 C 0.10 2.55 6.61 40.49 0.27 2.82 16 19 C -0.11 -2.13 9.99 22.38 0.22 -1.91 16 20 C -0.08 -0.98 9.94 22.04 0.22 -0.76 16 21 C -0.10 -0.83 9.96 22.07 0.22 -0.61 16 22 C -0.10 -1.15 9.77 22.32 0.22 -0.93 16 23 C -0.09 -1.89 5.75 -21.22 -0.12 -2.01 16 24 C -0.04 -0.91 9.66 22.50 0.22 -0.69 16 25 C -0.07 -2.20 6.32 22.42 0.14 -2.06 16 26 Cl -0.03 -0.98 25.92 -2.72 -0.07 -1.05 16 27 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.04 1.80 5.65 -2.39 -0.01 1.78 16 29 H 0.03 1.63 7.85 -2.39 -0.02 1.61 16 30 H 0.08 4.33 5.95 -2.39 -0.01 4.31 16 31 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 33 H 0.40 17.55 7.84 -92.71 -0.73 16.82 16 34 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 35 H 0.17 0.83 8.06 -2.91 -0.02 0.80 16 36 H 0.17 0.20 8.06 -2.91 -0.02 0.18 16 37 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16 38 H 0.19 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -70.94 332.34 2.38 -68.56 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 0.38 Total: 19.35 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: 3.77 Total: -2.04 kcal Atomic # 7 Polarization: -99.94 SS G_CDS: -3.69 Total: -103.63 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.04 Total: -26.43 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.07 Total: -1.05 kcal Total: -70.94 2.38 -68.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355814609.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.519 kcal (2) G-P(sol) polarization free energy of solvation -70.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds