Wall clock time and date at job start Tue Mar 31 2020 12:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46494 * 109.47052 * 2 1 4 4 C 1.36565 * 127.12392 * 265.17212 * 3 2 1 5 5 N 1.30368 * 107.31494 * 180.26858 * 4 3 2 6 6 N 1.28534 * 110.02688 * 359.73623 * 5 4 3 7 7 C 1.31167 * 109.83495 * 0.02562 * 6 5 4 8 8 N 1.38882 * 126.46579 * 180.02562 * 7 6 5 9 9 C 1.34780 * 119.99899 * 0.02562 * 8 7 6 10 10 O 1.21549 * 120.00185 * 0.02562 * 9 8 7 11 11 C 1.47815 * 119.99573 * 180.27746 * 9 8 7 12 12 C 1.39694 * 120.10742 * 359.44771 * 11 9 8 13 13 C 1.38034 * 120.03757 * 179.76832 * 12 11 9 14 14 C 1.38190 * 120.24382 * 0.50960 * 13 12 11 15 15 C 1.39184 * 120.20619 * 359.74788 * 14 13 12 16 16 S 1.76200 * 120.01692 * 179.97438 * 15 14 13 17 17 C 1.76202 * 99.99708 * 265.52190 * 16 15 14 18 18 H 1.07999 * 119.99884 * 5.12787 * 17 16 15 19 19 C 1.38727 * 120.00329 * 185.11812 * 17 16 15 20 20 N 1.31631 * 119.99543 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00467 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47159 * 89.99977 * 21 19 17 23 23 H 1.48500 * 109.47520 * 210.00132 * 21 19 17 24 24 H 1.48502 * 109.47192 * 330.00404 * 21 19 17 25 25 C 1.38867 * 119.96204 * 359.97438 * 15 14 13 26 26 H 1.09006 * 109.46610 * 300.00139 * 1 2 3 27 27 H 1.09003 * 109.46805 * 59.99874 * 1 2 3 28 28 H 1.08993 * 109.47673 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46783 * 239.99703 * 2 1 3 30 30 H 1.09003 * 109.46805 * 120.00125 * 2 1 3 31 31 H 1.08004 * 126.33990 * 0.02562 * 4 3 2 32 32 H 0.97005 * 119.99955 * 180.02562 * 8 7 6 33 33 H 1.07994 * 119.97859 * 0.02657 * 12 11 9 34 34 H 1.07997 * 119.87743 * 180.23923 * 13 12 11 35 35 H 1.07993 * 119.89487 * 179.76357 * 14 13 12 36 36 H 0.97002 * 119.99464 * 179.97438 * 20 19 17 37 37 H 1.08004 * 120.12553 * 180.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3795 2.1277 -1.0850 5 7 2.7588 3.2946 -0.6443 6 7 2.6566 3.3359 0.6363 7 6 2.2040 2.1890 1.0839 8 7 1.9633 1.8579 2.4110 9 6 2.1975 2.7608 3.3840 10 8 2.6188 3.8649 3.0999 11 6 1.9471 2.4062 4.7970 12 6 1.4570 1.1400 5.1254 13 6 1.2283 0.8087 6.4458 14 6 1.4725 1.7296 7.4468 15 6 1.9558 2.9960 7.1306 16 16 2.2647 4.1665 8.4108 17 6 0.7367 5.0438 8.3984 18 1 -0.0710 4.7126 7.7625 19 6 0.5709 6.1598 9.2057 20 7 1.5554 6.5636 9.9805 21 14 -1.0493 7.0894 9.1931 22 1 -1.9555 6.5185 10.2218 23 1 -0.8002 8.5223 9.4932 24 1 -1.6802 6.9664 7.8545 25 6 2.1944 3.3364 5.8056 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 2.3588 1.8090 -2.1167 32 1 1.6267 0.9768 2.6377 33 1 1.2609 0.4184 4.3462 34 1 0.8530 -0.1722 6.6971 35 1 1.2879 1.4658 8.4776 36 1 1.4396 7.3442 10.5446 37 1 2.5698 4.3181 5.5572 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356340371.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:30 Heat of formation + Delta-G solvation = 84.490150 kcal Electronic energy + Delta-G solvation = -22869.018010 eV Core-core repulsion = 19353.715579 eV Total energy + Delta-G solvation = -3515.302430 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.18704 -40.14303 -37.99745 -36.28387 -34.98323 -32.52556 -31.35685 -31.03121 -30.67417 -29.45174 -25.59287 -24.95556 -24.34977 -22.78951 -22.51742 -21.56410 -20.23235 -18.78639 -18.05380 -17.32048 -16.76485 -16.43479 -15.99938 -15.39278 -15.16647 -14.86523 -14.81832 -14.70188 -14.37446 -13.97062 -13.62367 -13.53114 -13.01664 -12.91618 -12.46282 -12.09708 -11.77756 -11.55355 -11.30893 -11.23197 -11.16361 -11.09412 -10.74505 -10.46449 -10.45419 -10.06145 -9.91355 -9.19389 -9.09964 -8.79529 -8.58025 -8.10964 -6.74835 -6.30544 -4.05300 0.92853 1.52305 1.62982 1.68014 2.70267 2.76458 3.07723 3.18919 3.22275 3.27791 3.41689 3.90766 3.99282 4.20709 4.24323 4.28865 4.45350 4.49805 4.81521 4.89551 4.92775 5.04554 5.06296 5.09642 5.26108 5.41049 5.43923 5.51103 5.60706 5.75039 5.82921 6.08330 6.11698 6.42479 6.50045 6.66018 6.80165 6.97629 7.08340 7.55691 7.97922 8.30475 8.68983 9.15479 10.76226 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.018256 B = 0.002974 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.348588 B = 9413.540878 C = 9943.623427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.101 3.899 3 N -0.498 5.498 4 C 0.146 3.854 5 N -0.282 5.282 6 N -0.273 5.273 7 C 0.410 3.590 8 N -0.637 5.637 9 C 0.564 3.436 10 O -0.461 6.461 11 C -0.150 4.150 12 C -0.092 4.092 13 C -0.138 4.138 14 C -0.051 4.051 15 C -0.104 4.104 16 S -0.031 6.031 17 C -0.522 4.522 18 H 0.076 0.924 19 C 0.074 3.926 20 N -0.869 5.869 21 Si 0.921 3.079 22 H -0.276 1.276 23 H -0.281 1.281 24 H -0.271 1.271 25 C -0.013 4.013 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.222 0.778 32 H 0.413 0.587 33 H 0.114 0.886 34 H 0.126 0.874 35 H 0.134 0.866 36 H 0.270 0.730 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.630 -20.082 -17.985 27.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.022 4.022 3 N -0.198 5.198 4 C -0.142 4.142 5 N -0.120 5.120 6 N -0.119 5.119 7 C 0.055 3.945 8 N -0.292 5.292 9 C 0.351 3.649 10 O -0.328 6.328 11 C -0.155 4.155 12 C -0.111 4.111 13 C -0.158 4.158 14 C -0.072 4.072 15 C -0.215 4.215 16 S 0.203 5.797 17 C -0.669 4.669 18 H 0.094 0.906 19 C -0.135 4.135 20 N -0.504 5.504 21 Si 0.747 3.253 22 H -0.202 1.202 23 H -0.206 1.206 24 H -0.195 1.195 25 C -0.035 4.035 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.123 0.877 30 H 0.109 0.891 31 H 0.238 0.762 32 H 0.251 0.749 33 H 0.132 0.868 34 H 0.144 0.856 35 H 0.152 0.848 36 H 0.080 0.920 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.787 -17.452 -17.253 24.553 hybrid contribution -2.817 -1.688 -0.837 3.389 sum -3.604 -19.140 -18.090 26.582 Atomic orbital electron populations 1.22224 0.93562 1.03713 1.03756 1.21917 0.96005 0.78968 1.05280 1.46582 1.53067 1.13934 1.06241 1.26333 1.04145 0.89714 0.93970 1.74222 1.17521 1.17121 1.03183 1.75099 1.19861 1.14682 1.02232 1.21313 1.01500 0.88870 0.82852 1.42575 1.67391 1.18700 1.00551 1.18542 0.77720 0.83964 0.84650 1.90947 1.39698 1.19955 1.82225 1.19591 1.08462 0.96525 0.90910 1.21076 0.98656 0.94600 0.96763 1.21052 1.02431 0.99863 0.92461 1.22021 0.92960 0.92449 0.99787 1.22898 1.00464 0.99376 0.98726 1.83658 1.25072 1.33528 1.37401 1.22834 0.98211 1.15584 1.30265 0.90562 1.25005 0.97964 0.95935 0.94615 1.69986 1.31344 1.24895 1.24214 0.86114 0.81743 0.78680 0.78759 1.20163 1.20591 1.19521 1.22008 0.92176 0.98528 0.90798 0.91741 0.91301 0.89881 0.87736 0.89078 0.76190 0.74905 0.86797 0.85635 0.84824 0.91987 0.83916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.58 10.24 37.16 0.38 -0.20 16 2 C 0.10 0.36 6.74 -4.04 -0.03 0.33 16 3 N -0.50 -4.36 2.80 -118.67 -0.33 -4.69 16 4 C 0.15 1.39 12.79 -89.08 -1.14 0.25 16 5 N -0.28 -4.29 12.18 29.87 0.36 -3.93 16 6 N -0.27 -4.84 10.45 30.37 0.32 -4.53 16 7 C 0.41 5.52 8.54 -318.50 -2.72 2.80 16 8 N -0.64 -7.70 5.35 -13.29 -0.07 -7.77 16 9 C 0.56 9.24 7.73 -12.34 -0.10 9.14 16 10 O -0.46 -9.71 15.07 5.32 0.08 -9.63 16 11 C -0.15 -2.39 5.87 -105.00 -0.62 -3.01 16 12 C -0.09 -1.12 9.54 -39.11 -0.37 -1.49 16 13 C -0.14 -1.78 10.02 -39.67 -0.40 -2.17 16 14 C -0.05 -0.86 9.79 -39.25 -0.38 -1.24 16 15 C -0.10 -2.14 5.45 -39.00 -0.21 -2.35 16 16 S -0.03 -0.79 21.41 -107.50 -2.30 -3.09 16 17 C -0.52 -14.56 9.46 30.91 0.29 -14.27 16 18 H 0.08 2.10 7.79 -52.49 -0.41 1.69 16 19 C 0.07 2.07 5.49 -17.46 -0.10 1.97 16 20 N -0.87 -25.33 13.22 55.49 0.73 -24.60 16 21 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 C -0.01 -0.26 9.34 -38.91 -0.36 -0.63 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 29 H 0.10 0.12 8.14 -51.93 -0.42 -0.31 16 30 H 0.09 0.21 7.85 -51.93 -0.41 -0.20 16 31 H 0.22 0.93 8.06 -52.48 -0.42 0.51 16 32 H 0.41 3.15 6.33 -40.82 -0.26 2.89 16 33 H 0.11 0.85 6.40 -52.49 -0.34 0.52 16 34 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.13 2.12 8.06 -52.49 -0.42 1.70 16 36 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.14 3.08 7.65 -52.48 -0.40 2.68 16 LS Contribution 343.43 15.07 5.18 5.18 Total: -1.00 -37.83 343.43 -10.72 -48.54 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -3.91 Total: -1.02 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -5.75 Total: -10.86 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 1.01 Total: -45.52 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.08 Total: -9.63 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -0.79 SS G_CDS: -2.30 Total: -3.09 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -37.83 -10.72 -48.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356340371.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.035 kcal (2) G-P(sol) polarization free energy of solvation -37.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds