Wall clock time and date at job start Tue Mar 31 2020 12:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46494 * 109.47052 * 2 1 4 4 C 1.36565 * 127.12392 * 265.17212 * 3 2 1 5 5 N 1.30368 * 107.31494 * 180.26858 * 4 3 2 6 6 N 1.28534 * 110.02688 * 359.73623 * 5 4 3 7 7 C 1.31167 * 109.83495 * 0.02562 * 6 5 4 8 8 N 1.38882 * 126.46579 * 180.02562 * 7 6 5 9 9 C 1.34780 * 119.99899 * 0.02562 * 8 7 6 10 10 O 1.21549 * 120.00185 * 0.02562 * 9 8 7 11 11 C 1.47815 * 119.99573 * 180.27746 * 9 8 7 12 12 C 1.39694 * 120.10742 * 359.44771 * 11 9 8 13 13 C 1.38034 * 120.03757 * 179.76832 * 12 11 9 14 14 C 1.38190 * 120.24382 * 0.50960 * 13 12 11 15 15 C 1.39184 * 120.20619 * 359.74788 * 14 13 12 16 16 S 1.76200 * 120.01692 * 179.97438 * 15 14 13 17 17 C 1.76202 * 99.99708 * 265.52190 * 16 15 14 18 18 H 1.07999 * 119.99884 * 5.12787 * 17 16 15 19 19 C 1.38727 * 120.00329 * 185.11812 * 17 16 15 20 20 N 1.31631 * 119.99543 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00467 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47159 * 89.99977 * 21 19 17 23 23 H 1.48500 * 109.47520 * 210.00132 * 21 19 17 24 24 H 1.48502 * 109.47192 * 330.00404 * 21 19 17 25 25 C 1.38867 * 119.96204 * 359.97438 * 15 14 13 26 26 H 1.09006 * 109.46610 * 300.00139 * 1 2 3 27 27 H 1.09003 * 109.46805 * 59.99874 * 1 2 3 28 28 H 1.08993 * 109.47673 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46783 * 239.99703 * 2 1 3 30 30 H 1.09003 * 109.46805 * 120.00125 * 2 1 3 31 31 H 1.08004 * 126.33990 * 0.02562 * 4 3 2 32 32 H 0.97005 * 119.99955 * 180.02562 * 8 7 6 33 33 H 1.07994 * 119.97859 * 0.02657 * 12 11 9 34 34 H 1.07997 * 119.87743 * 180.23923 * 13 12 11 35 35 H 1.07993 * 119.89487 * 179.76357 * 14 13 12 36 36 H 0.97002 * 119.99464 * 179.97438 * 20 19 17 37 37 H 1.08004 * 120.12553 * 180.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3795 2.1277 -1.0850 5 7 2.7588 3.2946 -0.6443 6 7 2.6566 3.3359 0.6363 7 6 2.2040 2.1890 1.0839 8 7 1.9633 1.8579 2.4110 9 6 2.1975 2.7608 3.3840 10 8 2.6188 3.8649 3.0999 11 6 1.9471 2.4062 4.7970 12 6 1.4570 1.1400 5.1254 13 6 1.2283 0.8087 6.4458 14 6 1.4725 1.7296 7.4468 15 6 1.9558 2.9960 7.1306 16 16 2.2647 4.1665 8.4108 17 6 0.7367 5.0438 8.3984 18 1 -0.0710 4.7126 7.7625 19 6 0.5709 6.1598 9.2057 20 7 1.5554 6.5636 9.9805 21 14 -1.0493 7.0894 9.1931 22 1 -1.9555 6.5185 10.2218 23 1 -0.8002 8.5223 9.4932 24 1 -1.6802 6.9664 7.8545 25 6 2.1944 3.3364 5.8056 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 2.3588 1.8090 -2.1167 32 1 1.6267 0.9768 2.6377 33 1 1.2609 0.4184 4.3462 34 1 0.8530 -0.1722 6.6971 35 1 1.2879 1.4658 8.4776 36 1 1.4396 7.3442 10.5446 37 1 2.5698 4.3181 5.5572 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356340371.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:29 Heat of formation + Delta-G solvation = 61.149511 kcal Electronic energy + Delta-G solvation = -22870.030136 eV Core-core repulsion = 19353.715579 eV Total energy + Delta-G solvation = -3516.314556 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.07165 -41.39766 -39.28278 -37.02984 -36.01892 -34.66073 -32.59542 -31.96998 -31.52332 -30.47843 -27.75352 -25.93217 -25.06220 -23.90020 -23.57716 -22.48749 -21.39500 -20.08226 -19.47453 -18.64114 -17.63911 -17.34148 -17.12283 -16.94217 -16.72667 -16.05953 -15.92726 -15.73640 -15.50231 -14.99818 -14.83106 -14.63042 -14.08034 -13.88547 -13.29826 -13.23072 -13.12913 -12.97025 -12.72788 -12.47992 -12.44287 -12.38369 -12.26073 -11.77479 -11.48071 -11.24215 -11.17774 -11.15660 -10.78647 -10.06675 -9.76308 -9.61430 -8.81540 -8.40351 -6.20296 -0.32994 0.21181 0.73350 0.81075 1.28766 1.36847 1.45260 1.60420 1.68772 2.00253 2.02509 2.23283 2.74350 2.93055 3.23971 3.40353 3.58690 3.80585 3.89935 3.93848 4.03486 4.18101 4.22757 4.33199 4.38256 4.44611 4.49070 4.63085 4.84527 4.88255 4.97152 5.13047 5.21846 5.23336 5.27422 5.37524 5.48026 5.80594 5.94335 6.02475 6.14796 6.81940 7.00410 7.77924 8.66790 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.018256 B = 0.002974 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.348588 B = 9413.540878 C = 9943.623427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.091 3.909 3 N -0.482 5.482 4 C 0.178 3.822 5 N -0.345 5.345 6 N -0.343 5.343 7 C 0.394 3.606 8 N -0.611 5.611 9 C 0.566 3.434 10 O -0.521 6.521 11 C -0.150 4.150 12 C -0.058 4.058 13 C -0.115 4.115 14 C -0.056 4.056 15 C -0.127 4.127 16 S -0.095 6.095 17 C -0.536 4.536 18 H 0.068 0.932 19 C 0.020 3.980 20 N -0.906 5.906 21 Si 0.991 3.009 22 H -0.259 1.259 23 H -0.274 1.274 24 H -0.270 1.270 25 C -0.042 4.042 26 H 0.046 0.954 27 H 0.060 0.940 28 H 0.109 0.891 29 H 0.140 0.860 30 H 0.112 0.888 31 H 0.275 0.725 32 H 0.436 0.564 33 H 0.180 0.820 34 H 0.183 0.817 35 H 0.139 0.861 36 H 0.274 0.726 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.981 -25.124 -20.349 32.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.029 4.029 3 N -0.181 5.181 4 C -0.111 4.111 5 N -0.182 5.182 6 N -0.188 5.188 7 C 0.037 3.963 8 N -0.267 5.267 9 C 0.354 3.646 10 O -0.393 6.393 11 C -0.156 4.156 12 C -0.077 4.077 13 C -0.134 4.134 14 C -0.077 4.077 15 C -0.239 4.239 16 S 0.140 5.860 17 C -0.683 4.683 18 H 0.087 0.913 19 C -0.186 4.186 20 N -0.542 5.542 21 Si 0.813 3.187 22 H -0.184 1.184 23 H -0.199 1.199 24 H -0.195 1.195 25 C -0.064 4.064 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.128 0.872 29 H 0.158 0.842 30 H 0.130 0.870 31 H 0.290 0.710 32 H 0.279 0.721 33 H 0.197 0.803 34 H 0.201 0.799 35 H 0.156 0.844 36 H 0.083 0.917 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.158 -22.586 -19.636 30.094 hybrid contribution -2.084 -0.384 -0.333 2.145 sum -5.241 -22.970 -19.968 30.884 Atomic orbital electron populations 1.22232 0.93205 1.05042 1.02542 1.22488 0.96214 0.76064 1.08173 1.46860 1.51710 1.15250 1.04229 1.27380 0.99860 0.87989 0.95834 1.74096 1.20971 1.20528 1.02613 1.74924 1.22076 1.17927 1.03868 1.21223 1.02013 0.89236 0.83853 1.42052 1.66272 1.18777 0.99624 1.18600 0.76890 0.83661 0.85419 1.90932 1.42568 1.22702 1.83100 1.19567 1.08770 0.97519 0.89725 1.21731 0.94264 0.93224 0.98442 1.21596 0.99760 1.00855 0.91229 1.22159 0.92548 0.91409 1.01571 1.22491 1.04653 0.99776 0.96952 1.83530 1.25572 1.36135 1.40773 1.23073 0.98903 1.16255 1.30107 0.91336 1.26002 1.01746 0.96778 0.94046 1.70111 1.33508 1.25526 1.25101 0.85059 0.77286 0.77387 0.78975 1.18408 1.19879 1.19456 1.21633 0.94582 0.98273 0.91876 0.93452 0.92110 0.87195 0.84215 0.86975 0.70961 0.72129 0.80330 0.79938 0.84350 0.91700 0.88091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.32 10.24 71.98 0.74 0.42 16 2 C 0.09 0.15 6.74 86.38 0.58 0.73 16 3 N -0.48 -6.83 2.80 -529.37 -1.48 -8.31 16 4 C 0.18 2.90 12.79 179.81 2.30 5.21 16 5 N -0.34 -10.51 12.18 -59.40 -0.72 -11.23 16 6 N -0.34 -12.54 10.45 -57.84 -0.60 -13.14 16 7 C 0.39 10.13 8.54 259.98 2.22 12.35 16 8 N -0.61 -13.43 5.35 -314.24 -1.68 -15.11 16 9 C 0.57 18.65 7.73 86.78 0.67 19.32 16 10 O -0.52 -23.57 15.07 -3.87 -0.06 -23.63 16 11 C -0.15 -4.69 5.87 -20.11 -0.12 -4.80 16 12 C -0.06 -1.12 9.54 22.57 0.22 -0.91 16 13 C -0.12 -2.35 10.02 22.21 0.22 -2.13 16 14 C -0.06 -1.80 9.79 22.49 0.22 -1.58 16 15 C -0.13 -5.48 5.45 22.65 0.12 -5.35 16 16 S -0.09 -5.17 21.41 -56.49 -1.21 -6.38 16 17 C -0.54 -31.54 9.46 67.94 0.64 -30.90 16 18 H 0.07 3.97 7.79 -2.91 -0.02 3.95 16 19 C 0.02 1.13 5.49 84.84 0.47 1.60 16 20 N -0.91 -55.15 13.22 21.64 0.29 -54.87 16 21 Si 0.99 45.11 29.55 68.60 2.03 47.14 16 22 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 24 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 25 C -0.04 -1.75 9.34 22.70 0.21 -1.54 16 26 H 0.05 0.27 8.14 -2.38 -0.02 0.25 16 27 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.11 -0.34 8.14 -2.39 -0.02 -0.36 16 29 H 0.14 -0.63 8.14 -2.39 -0.02 -0.65 16 30 H 0.11 -0.21 7.85 -2.39 -0.02 -0.23 16 31 H 0.28 0.97 8.06 -2.91 -0.02 0.94 16 32 H 0.44 4.52 6.33 -92.70 -0.59 3.94 16 33 H 0.18 1.16 6.40 -2.91 -0.02 1.14 16 34 H 0.18 1.86 8.06 -2.91 -0.02 1.84 16 35 H 0.14 4.25 8.06 -2.91 -0.02 4.22 16 36 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 37 H 0.10 4.96 7.65 -2.91 -0.02 4.94 16 Total: -1.00 -96.88 343.43 5.58 -91.30 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: 0.53 Total: 1.82 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: 8.49 Total: -7.58 kcal Atomic # 7 Polarization: -98.45 SS G_CDS: -4.21 Total: -102.66 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.06 Total: -23.63 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Atomic # 16 Polarization: -5.17 SS G_CDS: -1.21 Total: -6.38 kcal Total: -96.88 5.58 -91.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356340371.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.447 kcal (2) G-P(sol) polarization free energy of solvation -96.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds