Wall clock time and date at job start Tue Mar 31 2020 12:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.38349 * 127.15124 * 2 1 4 4 C 1.39776 * 126.56539 * 359.97438 * 3 2 1 5 5 H 1.07999 * 119.99778 * 5.78826 * 4 3 2 6 6 C 1.40085 * 120.00068 * 185.78076 * 4 3 2 7 7 N 1.30808 * 119.99942 * 184.12744 * 6 4 3 8 8 Si 1.86799 * 119.99669 * 4.13543 * 6 4 3 9 9 H 1.48509 * 109.46950 * 179.97438 * 8 6 4 10 10 H 1.48495 * 109.47355 * 299.99259 * 8 6 4 11 11 H 1.48501 * 109.47215 * 59.99928 * 8 6 4 12 12 N 1.33098 * 106.87149 * 179.73605 * 3 2 1 13 13 N 1.28516 * 109.74574 * 0.25995 * 12 3 2 14 14 C 1.32389 * 110.20242 * 359.97438 * 13 12 3 15 15 S 1.76204 * 126.25914 * 179.97438 * 14 13 12 16 16 C 1.81000 * 99.99786 * 0.03042 * 15 14 13 17 17 C 1.50701 * 109.47130 * 180.02562 * 16 15 14 18 18 C 1.38364 * 119.85048 * 269.72825 * 17 16 15 19 19 C 1.37954 * 120.14331 * 179.72171 * 18 17 16 20 20 C 1.39576 * 119.85513 * 0.54827 * 19 18 17 21 21 C 1.47839 * 120.14642 * 179.70565 * 20 19 18 22 22 N 1.34773 * 120.00139 * 0.02562 * 21 20 19 23 23 O 1.21551 * 120.00260 * 180.02562 * 21 20 19 24 24 C 1.39581 * 119.70975 * 359.72079 * 20 19 18 25 25 C 1.37956 * 119.84944 * 0.02562 * 24 20 19 26 26 H 1.09000 * 109.46642 * 90.00171 * 1 2 3 27 27 H 1.08991 * 109.47275 * 210.00238 * 1 2 3 28 28 H 1.08996 * 109.46979 * 330.00798 * 1 2 3 29 29 H 0.97000 * 120.00392 * 354.84969 * 7 6 4 30 30 H 1.09008 * 109.47151 * 299.99549 * 16 15 14 31 31 H 1.08994 * 109.47580 * 59.99790 * 16 15 14 32 32 H 1.08008 * 119.92620 * 359.97438 * 18 17 16 33 33 H 1.08005 * 120.07517 * 180.24629 * 19 18 17 34 34 H 0.97001 * 120.00227 * 359.97438 * 22 21 20 35 35 H 0.97002 * 120.00295 * 180.02562 * 22 21 20 36 36 H 1.07994 * 120.06975 * 179.97438 * 24 20 19 37 37 H 1.07997 * 119.92339 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9086 2.4444 -0.0005 5 1 0.8640 2.7018 0.0934 6 6 2.8709 3.4551 -0.1226 7 7 2.5140 4.7110 -0.0421 8 14 4.6635 3.0094 -0.4007 9 1 5.4732 4.2506 -0.4956 10 1 5.1506 2.1857 0.7349 11 1 4.7916 2.2376 -1.6629 12 7 3.5490 0.6414 0.0059 13 7 3.5371 -0.6437 0.0039 14 6 2.2904 -1.0893 -0.0027 15 16 1.7874 -2.7780 -0.0083 16 6 3.4059 -3.5881 -0.0013 17 6 3.2192 -5.0835 -0.0056 18 6 3.1331 -5.7702 1.1926 19 6 2.9565 -7.1384 1.1958 20 6 2.8761 -7.8314 -0.0131 21 6 2.6934 -9.2984 -0.0171 22 7 2.6035 -9.9696 1.1482 23 8 2.6241 -9.8994 -1.0714 24 6 2.9693 -7.1333 -1.2182 25 6 3.1406 -5.7645 -1.2073 26 1 -0.3632 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5137 29 1 1.5753 4.9451 0.0271 30 1 3.9654 -3.2897 -0.8880 31 1 3.9563 -3.2928 0.8919 32 1 3.2003 -5.2333 2.1274 33 1 2.8854 -7.6727 2.1317 34 1 2.6591 -9.4901 1.9896 35 1 2.4840 -10.9322 1.1455 36 1 2.9083 -7.6638 -2.1569 37 1 3.2133 -5.2232 -2.1391 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357069472.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:13 Heat of formation + Delta-G solvation = 37.499431 kcal Electronic energy + Delta-G solvation = -22371.499978 eV Core-core repulsion = 18854.159878 eV Total energy + Delta-G solvation = -3517.340101 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.98771 -40.40311 -38.62976 -34.31821 -33.99109 -33.64977 -32.85544 -31.20729 -30.09223 -27.80842 -26.76827 -25.36474 -23.17486 -22.95801 -21.49489 -20.73355 -20.18760 -18.55113 -18.25025 -17.20857 -16.88471 -15.52846 -15.47047 -15.44032 -15.20658 -15.06110 -15.00995 -14.45807 -13.93728 -13.79366 -13.58730 -13.31299 -12.93330 -12.88172 -12.59212 -12.47057 -12.05518 -11.80722 -11.34655 -11.19756 -10.91671 -10.57721 -10.41462 -10.11138 -9.95486 -9.62623 -9.44853 -9.28890 -9.14893 -9.00060 -8.73435 -8.44443 -7.47412 -7.17820 -4.89688 0.38617 1.09440 1.78702 2.43988 2.69549 2.85038 3.12461 3.53336 3.55889 3.62066 3.82514 4.00408 4.10043 4.32002 4.37236 4.43934 4.57551 4.68550 5.00995 5.05935 5.08212 5.32616 5.34041 5.45731 5.67809 5.72840 5.79647 5.86150 5.93974 6.02328 6.27295 6.31441 6.37026 6.56396 6.59472 6.92511 7.06174 7.34981 7.47233 7.86895 7.99598 8.29435 8.50246 9.91276 10.05075 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.034768 B = 0.002491 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.148066 B =11239.983273 C =11591.130359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.512 5.512 3 C 0.345 3.655 4 C -0.491 4.491 5 H 0.083 0.917 6 C 0.064 3.936 7 N -0.806 5.806 8 Si 1.113 2.887 9 H -0.311 1.311 10 H -0.260 1.260 11 H -0.280 1.280 12 N -0.415 5.415 13 N -0.269 5.269 14 C 0.062 3.938 15 S -0.031 6.031 16 C -0.064 4.064 17 C -0.039 4.039 18 C -0.110 4.110 19 C -0.085 4.085 20 C -0.143 4.143 21 C 0.565 3.435 22 N -0.852 5.852 23 O -0.542 6.542 24 C -0.057 4.057 25 C -0.109 4.109 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.284 0.716 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.135 0.865 33 H 0.127 0.873 34 H 0.401 0.599 35 H 0.404 0.596 36 H 0.138 0.862 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.601 -21.731 3.776 22.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.214 5.214 3 C 0.102 3.898 4 C -0.532 4.532 5 H 0.101 0.899 6 C -0.159 4.159 7 N -0.430 5.430 8 Si 0.941 3.059 9 H -0.241 1.241 10 H -0.186 1.186 11 H -0.207 1.207 12 N -0.265 5.265 13 N -0.113 5.113 14 C -0.312 4.312 15 S 0.198 5.802 16 C -0.212 4.212 17 C -0.041 4.041 18 C -0.130 4.130 19 C -0.104 4.104 20 C -0.147 4.147 21 C 0.352 3.648 22 N -0.416 5.416 23 O -0.419 6.419 24 C -0.076 4.076 25 C -0.129 4.129 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.152 0.848 33 H 0.145 0.855 34 H 0.231 0.769 35 H 0.235 0.765 36 H 0.156 0.844 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.790 -21.705 2.895 21.911 hybrid contribution -2.223 0.011 0.703 2.332 sum -3.013 -21.694 3.599 22.196 Atomic orbital electron populations 1.21543 0.77735 1.02954 1.02061 1.45829 1.06417 1.04863 1.64243 1.21721 0.85111 0.89077 0.93847 1.19403 0.97438 0.87225 1.49099 0.89875 1.27368 1.08514 0.91267 0.88746 1.70674 1.21590 1.18460 1.32228 0.82696 0.70560 0.72178 0.80442 1.24097 1.18594 1.20693 1.73996 1.15908 1.00894 1.35752 1.74253 1.15407 1.05652 1.15965 1.25465 0.90913 0.93286 1.21517 1.84796 1.09417 0.90476 1.95468 1.22355 0.98254 0.92225 1.08339 1.19644 0.97061 0.93666 0.93711 1.21060 0.99899 0.93858 0.98138 1.21214 0.98045 0.94438 0.96718 1.19867 1.07452 0.92669 0.94751 1.18321 0.75336 0.87438 0.83717 1.43762 1.77123 1.12149 1.08586 1.90818 1.50116 1.69917 1.31091 1.21255 0.94883 0.93682 0.97771 1.21147 0.99673 0.93895 0.98156 0.92114 0.91175 0.90242 0.90520 0.87651 0.87696 0.84762 0.85505 0.76899 0.76476 0.84424 0.84625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.76 10.89 59.85 0.65 2.41 16 2 N -0.51 -11.60 3.26 -123.18 -0.40 -12.00 16 3 C 0.35 9.07 7.27 -154.81 -1.13 7.94 16 4 C -0.49 -13.00 9.50 -38.31 -0.36 -13.36 16 5 H 0.08 2.13 7.47 -52.49 -0.39 1.74 16 6 C 0.06 1.71 5.52 -17.29 -0.10 1.61 16 7 N -0.81 -21.40 13.65 55.56 0.76 -20.64 16 8 Si 1.11 27.72 25.90 -169.99 -4.40 23.32 16 9 H -0.31 -7.45 7.11 56.52 0.40 -7.05 16 10 H -0.26 -6.67 6.76 56.52 0.38 -6.29 16 11 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 12 N -0.42 -11.33 7.51 31.26 0.23 -11.10 16 13 N -0.27 -6.69 11.62 30.89 0.36 -6.33 16 14 C 0.06 1.35 8.09 -87.28 -0.71 0.65 16 15 S -0.03 -0.49 21.77 -107.50 -2.34 -2.83 16 16 C -0.06 -0.86 5.35 36.01 0.19 -0.67 16 17 C -0.04 -0.43 5.14 -104.53 -0.54 -0.96 16 18 C -0.11 -1.02 9.68 -39.64 -0.38 -1.40 16 19 C -0.09 -0.67 9.54 -39.19 -0.37 -1.04 16 20 C -0.14 -1.38 5.87 -104.97 -0.62 -2.00 16 21 C 0.57 5.61 8.05 -12.33 -0.10 5.51 16 22 N -0.85 -4.70 8.82 30.53 0.27 -4.43 16 23 O -0.54 -7.49 17.18 5.32 0.09 -7.39 16 24 C -0.06 -0.59 9.60 -39.18 -0.38 -0.97 16 25 C -0.11 -1.14 9.68 -39.64 -0.38 -1.52 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.07 1.04 7.85 -51.93 -0.41 0.63 16 28 H 0.08 1.33 7.48 -51.93 -0.39 0.94 16 29 H 0.28 7.14 8.72 -40.82 -0.36 6.79 16 30 H 0.10 1.49 8.08 -51.91 -0.42 1.07 16 31 H 0.10 1.46 8.08 -51.92 -0.42 1.04 16 32 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 33 H 0.13 0.55 6.41 -52.48 -0.34 0.21 16 34 H 0.40 1.11 6.86 -40.82 -0.28 0.83 16 35 H 0.40 1.71 8.93 -40.82 -0.36 1.35 16 36 H 0.14 1.39 7.65 -52.49 -0.40 0.99 16 37 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 336.64 15.07 5.07 5.07 Total: -1.00 -34.15 336.64 -8.42 -42.58 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: -3.85 Total: -2.43 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -4.22 Total: -3.81 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: 1.22 Total: -54.50 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: 0.09 Total: -7.39 kcal Atomic # 14 Polarization: 27.72 SS G_CDS: -4.40 Total: 23.32 kcal Atomic # 16 Polarization: -0.49 SS G_CDS: -2.34 Total: -2.83 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.15 -8.42 -42.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357069472.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.076 kcal (2) G-P(sol) polarization free energy of solvation -34.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds