Wall clock time and date at job start Tue Mar 31 2020 12:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.38349 * 127.15124 * 2 1 4 4 C 1.39776 * 126.56539 * 359.97438 * 3 2 1 5 5 H 1.07999 * 119.99778 * 5.78826 * 4 3 2 6 6 C 1.40085 * 120.00068 * 185.78076 * 4 3 2 7 7 N 1.30808 * 119.99942 * 184.12744 * 6 4 3 8 8 Si 1.86799 * 119.99669 * 4.13543 * 6 4 3 9 9 H 1.48509 * 109.46950 * 179.97438 * 8 6 4 10 10 H 1.48495 * 109.47355 * 299.99259 * 8 6 4 11 11 H 1.48501 * 109.47215 * 59.99928 * 8 6 4 12 12 N 1.33098 * 106.87149 * 179.73605 * 3 2 1 13 13 N 1.28516 * 109.74574 * 0.25995 * 12 3 2 14 14 C 1.32389 * 110.20242 * 359.97438 * 13 12 3 15 15 S 1.76204 * 126.25914 * 179.97438 * 14 13 12 16 16 C 1.81000 * 99.99786 * 0.03042 * 15 14 13 17 17 C 1.50701 * 109.47130 * 180.02562 * 16 15 14 18 18 C 1.38364 * 119.85048 * 269.72825 * 17 16 15 19 19 C 1.37954 * 120.14331 * 179.72171 * 18 17 16 20 20 C 1.39576 * 119.85513 * 0.54827 * 19 18 17 21 21 C 1.47839 * 120.14642 * 179.70565 * 20 19 18 22 22 N 1.34773 * 120.00139 * 0.02562 * 21 20 19 23 23 O 1.21551 * 120.00260 * 180.02562 * 21 20 19 24 24 C 1.39581 * 119.70975 * 359.72079 * 20 19 18 25 25 C 1.37956 * 119.84944 * 0.02562 * 24 20 19 26 26 H 1.09000 * 109.46642 * 90.00171 * 1 2 3 27 27 H 1.08991 * 109.47275 * 210.00238 * 1 2 3 28 28 H 1.08996 * 109.46979 * 330.00798 * 1 2 3 29 29 H 0.97000 * 120.00392 * 354.84969 * 7 6 4 30 30 H 1.09008 * 109.47151 * 299.99549 * 16 15 14 31 31 H 1.08994 * 109.47580 * 59.99790 * 16 15 14 32 32 H 1.08008 * 119.92620 * 359.97438 * 18 17 16 33 33 H 1.08005 * 120.07517 * 180.24629 * 19 18 17 34 34 H 0.97001 * 120.00227 * 359.97438 * 22 21 20 35 35 H 0.97002 * 120.00295 * 180.02562 * 22 21 20 36 36 H 1.07994 * 120.06975 * 179.97438 * 24 20 19 37 37 H 1.07997 * 119.92339 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9086 2.4444 -0.0005 5 1 0.8640 2.7018 0.0934 6 6 2.8709 3.4551 -0.1226 7 7 2.5140 4.7110 -0.0421 8 14 4.6635 3.0094 -0.4007 9 1 5.4732 4.2506 -0.4956 10 1 5.1506 2.1857 0.7349 11 1 4.7916 2.2376 -1.6629 12 7 3.5490 0.6414 0.0059 13 7 3.5371 -0.6437 0.0039 14 6 2.2904 -1.0893 -0.0027 15 16 1.7874 -2.7780 -0.0083 16 6 3.4059 -3.5881 -0.0013 17 6 3.2192 -5.0835 -0.0056 18 6 3.1331 -5.7702 1.1926 19 6 2.9565 -7.1384 1.1958 20 6 2.8761 -7.8314 -0.0131 21 6 2.6934 -9.2984 -0.0171 22 7 2.6035 -9.9696 1.1482 23 8 2.6241 -9.8994 -1.0714 24 6 2.9693 -7.1333 -1.2182 25 6 3.1406 -5.7645 -1.2073 26 1 -0.3632 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5137 29 1 1.5753 4.9451 0.0271 30 1 3.9654 -3.2897 -0.8880 31 1 3.9563 -3.2928 0.8919 32 1 3.2003 -5.2333 2.1274 33 1 2.8854 -7.6727 2.1317 34 1 2.6591 -9.4901 1.9896 35 1 2.4840 -10.9322 1.1455 36 1 2.9083 -7.6638 -2.1569 37 1 3.2133 -5.2232 -2.1391 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357069472.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:13 Heat of formation + Delta-G solvation = 14.601779 kcal Electronic energy + Delta-G solvation = -22372.492895 eV Core-core repulsion = 18854.159878 eV Total energy + Delta-G solvation = -3518.333017 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.84120 -41.15748 -39.42158 -35.93842 -35.41807 -35.02230 -33.69638 -31.99756 -31.93353 -28.85075 -28.29568 -27.17256 -24.04110 -23.68953 -23.30612 -22.13294 -21.37320 -20.19083 -19.21259 -18.38991 -17.87811 -17.08035 -16.87658 -16.36594 -16.18931 -16.07793 -15.91049 -15.81623 -15.66608 -15.09688 -14.69145 -14.61311 -14.33758 -14.21615 -13.86271 -13.63023 -13.38422 -13.08769 -12.85197 -12.76171 -12.07250 -12.00824 -11.81628 -11.54638 -11.40788 -11.23306 -10.90857 -10.74368 -10.56800 -10.37713 -10.00657 -9.82463 -9.48805 -8.69846 -6.86011 -0.47507 0.36827 0.45010 0.98624 1.14182 1.54528 1.60443 1.85759 1.94559 2.12753 2.21717 2.41706 2.51529 2.85905 3.04438 3.46349 3.70084 3.88923 3.93549 3.97976 4.14124 4.33214 4.34219 4.47614 4.53641 4.55665 4.62887 4.68638 4.80164 5.01741 5.20077 5.23166 5.29902 5.37095 5.48006 5.69455 5.79187 5.87671 6.00477 6.39225 6.39908 6.56913 7.26681 7.92544 8.15424 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.034768 B = 0.002491 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.148066 B =11239.983273 C =11591.130359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.515 5.515 3 C 0.325 3.675 4 C -0.508 4.508 5 H 0.083 0.917 6 C 0.041 3.959 7 N -0.823 5.823 8 Si 1.146 2.854 9 H -0.298 1.298 10 H -0.276 1.276 11 H -0.295 1.295 12 N -0.447 5.447 13 N -0.309 5.309 14 C 0.079 3.921 15 S 0.014 5.986 16 C -0.059 4.059 17 C -0.052 4.052 18 C -0.109 4.109 19 C -0.071 4.071 20 C -0.147 4.147 21 C 0.562 3.438 22 N -0.828 5.828 23 O -0.589 6.589 24 C -0.070 4.070 25 C -0.113 4.113 26 H 0.077 0.923 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.286 0.714 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.151 0.849 33 H 0.169 0.831 34 H 0.418 0.582 35 H 0.413 0.587 36 H 0.133 0.867 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.519 -24.356 5.181 25.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.215 5.215 3 C 0.078 3.922 4 C -0.549 4.549 5 H 0.101 0.899 6 C -0.179 4.179 7 N -0.448 5.448 8 Si 0.975 3.025 9 H -0.227 1.227 10 H -0.203 1.203 11 H -0.222 1.222 12 N -0.296 5.296 13 N -0.152 5.152 14 C -0.296 4.296 15 S 0.244 5.756 16 C -0.207 4.207 17 C -0.054 4.054 18 C -0.129 4.129 19 C -0.089 4.089 20 C -0.151 4.151 21 C 0.349 3.651 22 N -0.392 5.392 23 O -0.471 6.471 24 C -0.089 4.089 25 C -0.133 4.133 26 H 0.096 0.904 27 H 0.118 0.882 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.114 0.886 31 H 0.121 0.879 32 H 0.169 0.831 33 H 0.186 0.814 34 H 0.250 0.750 35 H 0.246 0.754 36 H 0.151 0.849 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.723 -24.319 4.352 24.765 hybrid contribution -2.018 0.455 0.311 2.092 sum -3.742 -23.864 4.663 24.601 Atomic orbital electron populations 1.21905 0.74710 1.04638 1.03720 1.46204 1.08370 1.04186 1.62737 1.21796 0.85739 0.89930 0.94759 1.19391 0.97400 0.87611 1.50513 0.89870 1.27767 1.09735 0.91518 0.88865 1.70666 1.21868 1.18460 1.33796 0.82200 0.69633 0.71782 0.78907 1.22747 1.20257 1.22250 1.73864 1.17016 1.02302 1.36426 1.74185 1.17097 1.04817 1.19054 1.26645 0.90260 0.96106 1.16610 1.84713 1.10835 0.85565 1.94523 1.22395 0.96688 0.93797 1.07841 1.19504 0.99134 0.91993 0.94781 1.21309 0.98994 0.94565 0.98019 1.21562 0.95865 0.93889 0.97601 1.20019 1.07092 0.92767 0.95224 1.18423 0.75066 0.87566 0.84069 1.43581 1.74873 1.12710 1.08062 1.90803 1.52620 1.70688 1.32964 1.21301 0.95577 0.93681 0.98305 1.21177 0.99753 0.94022 0.98302 0.90416 0.88198 0.89897 0.90269 0.88601 0.87909 0.83097 0.81405 0.74950 0.75419 0.84929 0.84388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.99 10.89 127.77 1.39 4.38 16 2 N -0.52 -22.76 3.26 -543.63 -1.77 -24.53 16 3 C 0.32 17.15 7.27 133.23 0.97 18.12 16 4 C -0.51 -27.24 9.50 23.09 0.22 -27.03 16 5 H 0.08 4.32 7.47 -2.91 -0.02 4.30 16 6 C 0.04 2.23 5.52 85.29 0.47 2.70 16 7 N -0.82 -44.12 13.65 21.86 0.30 -43.82 16 8 Si 1.15 57.78 25.90 68.60 1.78 59.55 16 9 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 10 H -0.28 -14.46 6.76 99.48 0.67 -13.79 16 11 H -0.29 -15.37 7.11 99.48 0.71 -14.67 16 12 N -0.45 -24.71 7.51 -55.02 -0.41 -25.13 16 13 N -0.31 -15.37 11.62 -56.17 -0.65 -16.02 16 14 C 0.08 3.34 8.09 179.18 1.45 4.79 16 15 S 0.01 0.42 21.77 -56.49 -1.23 -0.80 16 16 C -0.06 -1.49 5.35 71.24 0.38 -1.11 16 17 C -0.05 -1.02 5.14 -19.81 -0.10 -1.12 16 18 C -0.11 -1.64 9.68 22.23 0.22 -1.43 16 19 C -0.07 -0.82 9.54 22.53 0.21 -0.61 16 20 C -0.15 -2.46 5.87 -20.09 -0.12 -2.57 16 21 C 0.56 9.92 8.05 86.79 0.70 10.62 16 22 N -0.83 -6.36 8.82 -175.61 -1.55 -7.91 16 23 O -0.59 -15.82 17.18 -3.88 -0.07 -15.89 16 24 C -0.07 -1.36 9.60 22.53 0.22 -1.14 16 25 C -0.11 -2.20 9.68 22.23 0.22 -1.99 16 26 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.10 2.62 7.85 -2.39 -0.02 2.60 16 28 H 0.08 2.64 7.48 -2.39 -0.02 2.62 16 29 H 0.29 14.59 8.72 -92.71 -0.81 13.78 16 30 H 0.10 2.64 8.08 -2.39 -0.02 2.62 16 31 H 0.10 2.69 8.08 -2.40 -0.02 2.67 16 32 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 33 H 0.17 0.49 6.41 -2.91 -0.02 0.47 16 34 H 0.42 0.43 6.86 -92.71 -0.64 -0.21 16 35 H 0.41 2.25 8.93 -92.71 -0.83 1.42 16 36 H 0.13 2.67 7.65 -2.91 -0.02 2.65 16 37 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -75.56 336.64 2.22 -73.34 By element: Atomic # 1 Polarization: -2.02 SS G_CDS: -0.39 Total: -2.41 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: 6.22 Total: 3.62 kcal Atomic # 7 Polarization: -113.32 SS G_CDS: -4.09 Total: -117.41 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.07 Total: -15.89 kcal Atomic # 14 Polarization: 57.78 SS G_CDS: 1.78 Total: 59.55 kcal Atomic # 16 Polarization: 0.42 SS G_CDS: -1.23 Total: -0.80 kcal Total: -75.56 2.22 -73.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357069472.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.945 kcal (2) G-P(sol) polarization free energy of solvation -75.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds