Wall clock time and date at job start Tue Mar 31 2020 11:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46931 * 2 1 4 4 H 1.08999 * 109.46909 * 302.62690 * 3 2 1 5 5 C 1.50702 * 109.46997 * 182.62775 * 3 2 1 6 6 C 1.38234 * 119.98420 * 89.18875 * 5 3 2 7 7 C 1.38187 * 120.04943 * 180.02562 * 6 5 3 8 8 C 1.38500 * 120.02488 * 359.96626 * 7 6 5 9 9 F 1.35100 * 120.01093 * 179.97438 * 8 7 6 10 10 C 1.38400 * 119.97491 * 0.02562 * 8 7 6 11 11 C 1.38442 * 119.94763 * 359.75667 * 10 8 7 12 12 F 1.35098 * 120.01531 * 180.23156 * 11 10 8 13 13 S 1.81395 * 109.47046 * 62.63191 * 3 2 1 14 14 O 1.42101 * 108.58127 * 27.40339 * 13 3 2 15 15 O 1.42104 * 108.57918 * 158.43231 * 13 3 2 16 16 C 1.81400 * 101.91828 * 272.91695 * 13 3 2 17 17 C 1.53010 * 109.47171 * 185.42989 * 16 13 3 18 18 C 1.50700 * 109.46937 * 180.02562 * 17 16 13 19 19 H 1.07999 * 120.00442 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99553 * 180.02562 * 18 17 16 21 21 N 1.31520 * 120.00287 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00037 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46838 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47087 * 119.99612 * 22 20 18 25 25 H 1.48496 * 109.47393 * 239.99917 * 22 20 18 26 26 H 1.08999 * 109.46794 * 294.19200 * 1 2 3 27 27 H 1.09004 * 109.46846 * 174.19933 * 1 2 3 28 28 H 1.08996 * 109.47050 * 54.19942 * 1 2 3 29 29 H 1.08999 * 109.47893 * 120.00329 * 2 1 3 30 30 H 1.09002 * 109.46884 * 240.00506 * 2 1 3 31 31 H 1.07995 * 119.97690 * 359.97150 * 6 5 3 32 32 H 1.07998 * 119.99055 * 179.97438 * 7 6 5 33 33 H 1.07995 * 120.02613 * 179.97438 * 10 8 7 34 34 H 1.08996 * 109.47480 * 305.42912 * 16 13 3 35 35 H 1.09000 * 109.47265 * 65.43184 * 16 13 3 36 36 H 1.09005 * 109.46618 * 300.00200 * 17 16 13 37 37 H 1.09000 * 109.46867 * 59.99951 * 17 16 13 38 38 H 0.96991 * 120.00209 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6386 1.9697 -0.8655 5 6 3.5456 1.4430 -0.0651 6 6 4.1840 1.4446 -1.2912 7 6 5.5645 1.4446 -1.3525 8 6 6.3101 1.4436 -0.1853 9 9 7.6597 1.4430 -0.2456 10 6 5.6719 1.4422 1.0428 11 6 4.2888 1.4468 1.1030 12 9 3.6645 1.4502 2.3010 13 16 1.5002 2.2746 1.5188 14 8 1.3360 1.2970 2.5369 15 8 2.3547 3.3853 1.7547 16 6 -0.1368 2.8955 1.0443 17 6 -0.7036 3.7559 2.1756 18 6 -2.0639 4.2711 1.7816 19 1 -2.4822 4.0113 0.8204 20 6 -2.7739 5.0751 2.6479 21 7 -2.2643 5.3919 3.8183 22 14 -4.4597 5.7144 2.1594 23 1 -4.8031 5.2182 0.8025 24 1 -5.4726 5.2342 3.1335 25 1 -4.4435 7.1992 2.1536 26 1 -0.3633 0.4211 0.9374 27 1 -0.3633 -1.0225 -0.1039 28 1 -0.3633 0.6011 -0.8335 29 1 1.8935 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 3.6035 1.4450 -2.2019 32 1 6.0623 1.4454 -2.3109 33 1 6.2524 1.4411 1.9534 34 1 -0.0492 3.4968 0.1395 35 1 -0.8046 2.0543 0.8582 36 1 -0.7912 3.1544 3.0804 37 1 -0.0359 4.5971 2.3617 38 1 -2.7636 5.9577 4.4276 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358733528.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:24 Heat of formation + Delta-G solvation = -137.864919 kcal Electronic energy + Delta-G solvation = -25185.129272 eV Core-core repulsion = 21177.202865 eV Total energy + Delta-G solvation = -4007.926407 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.47481 -49.29342 -39.43940 -36.63374 -35.57508 -35.32071 -33.89212 -31.57888 -31.17748 -30.76695 -26.80918 -25.68291 -23.65197 -22.76082 -22.35899 -20.81635 -18.80767 -18.36224 -17.81743 -16.70889 -16.67447 -16.34943 -16.13304 -15.75562 -15.66849 -15.51811 -15.19930 -14.58008 -14.39809 -14.28591 -13.93080 -13.50494 -13.47010 -13.31287 -12.76817 -12.52639 -12.23600 -11.97611 -11.82738 -11.60575 -11.51208 -11.46344 -11.38821 -11.20561 -11.05635 -10.88444 -10.40465 -10.30233 -10.19314 -9.65899 -9.39865 -9.13111 -8.92107 -8.48714 -6.10508 -4.16414 0.32366 0.62803 0.68281 2.97823 3.23462 3.25908 3.33041 3.36096 3.52489 3.77792 4.02484 4.13222 4.28427 4.35236 4.44732 4.51499 4.78043 4.80367 4.92220 5.10227 5.22535 5.24524 5.39188 5.44658 5.51290 5.56230 5.60968 5.65356 5.69319 5.79417 5.80448 5.97539 6.16530 6.38473 6.52280 7.35848 7.41766 7.82255 8.18952 8.87380 9.48058 11.00482 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.024969 B = 0.003542 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.127077 B = 7902.772042 C = 8215.993531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.094 4.094 3 C -0.557 4.557 4 H 0.148 0.852 5 C -0.100 4.100 6 C -0.046 4.046 7 C -0.160 4.160 8 C 0.129 3.871 9 F -0.130 7.130 10 C -0.177 4.177 11 C 0.124 3.876 12 F -0.112 7.112 13 S 2.409 3.591 14 O -0.932 6.932 15 O -0.939 6.939 16 C -0.588 4.588 17 C 0.030 3.970 18 C -0.520 4.520 19 H 0.062 0.938 20 C 0.058 3.942 21 N -0.889 5.889 22 Si 0.899 3.101 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.149 0.851 32 H 0.147 0.853 33 H 0.156 0.844 34 H 0.118 0.882 35 H 0.128 0.872 36 H 0.033 0.967 37 H 0.036 0.964 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.702 -11.351 -12.713 21.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.132 4.132 3 C -0.661 4.661 4 H 0.166 0.834 5 C -0.102 4.102 6 C -0.065 4.065 7 C -0.179 4.179 8 C 0.109 3.891 9 F -0.109 7.109 10 C -0.197 4.197 11 C 0.104 3.896 12 F -0.090 7.090 13 S 2.591 3.409 14 O -0.929 6.929 15 O -0.936 6.936 16 C -0.720 4.720 17 C -0.009 4.009 18 C -0.560 4.560 19 H 0.080 0.920 20 C -0.145 4.145 21 N -0.527 5.527 22 Si 0.726 3.274 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.167 0.833 32 H 0.165 0.835 33 H 0.173 0.827 34 H 0.137 0.863 35 H 0.146 0.854 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 14.200 -11.214 -11.726 21.562 hybrid contribution -1.108 0.409 -0.776 1.413 sum 13.092 -10.806 -12.502 21.083 Atomic orbital electron populations 1.22313 0.94493 1.04047 1.03407 1.21252 0.96540 0.90921 1.04520 1.29619 0.98715 1.11055 1.26714 0.83391 1.19063 0.92959 1.05277 0.92896 1.20724 0.93357 0.95671 0.96760 1.21205 0.94186 1.04558 0.97973 1.17294 0.77182 1.01038 0.93565 1.91539 1.28512 1.93626 1.97181 1.20973 0.93027 1.06573 0.99096 1.17382 0.90836 1.00842 0.80526 1.91540 1.80848 1.93302 1.43353 1.08879 0.78891 0.76042 0.77094 1.93534 1.86719 1.61230 1.51423 1.93540 1.65380 1.51796 1.82925 1.30601 1.18178 1.11665 1.11600 1.18976 0.97457 0.94078 0.90347 1.21053 1.01067 1.31062 1.02791 0.91967 1.25074 0.98439 0.96075 0.94913 1.69973 1.38143 1.36479 1.08107 0.86429 0.83638 0.78704 0.78609 1.19629 1.20775 1.20796 0.90934 0.90714 0.91349 0.89689 0.90099 0.83321 0.83538 0.82676 0.86350 0.85432 0.94827 0.94564 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.02 8.46 37.16 0.31 -1.71 16 2 C -0.09 -1.03 5.08 -26.73 -0.14 -1.17 16 3 C -0.56 -6.97 2.42 -27.88 -0.07 -7.04 16 4 H 0.15 1.34 8.03 -51.92 -0.42 0.92 16 5 C -0.10 -1.25 4.78 -104.54 -0.50 -1.75 16 6 C -0.05 -0.42 9.70 -39.60 -0.38 -0.80 16 7 C -0.16 -1.38 10.03 -39.50 -0.40 -1.77 16 8 C 0.13 1.34 7.30 -39.43 -0.29 1.06 16 9 F -0.13 -1.35 17.27 2.25 0.04 -1.31 16 10 C -0.18 -2.12 10.01 -39.45 -0.39 -2.52 16 11 C 0.12 1.79 6.45 -39.43 -0.25 1.54 16 12 F -0.11 -1.99 11.90 2.25 0.03 -1.97 16 13 S 2.41 44.52 2.54 -107.50 -0.27 44.25 16 14 O -0.93 -19.39 14.79 -57.83 -0.86 -20.25 16 15 O -0.94 -20.34 15.89 -57.83 -0.92 -21.26 16 16 C -0.59 -11.29 5.19 37.16 0.19 -11.09 16 17 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 18 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 19 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 22 Si 0.90 21.14 29.54 -169.99 -5.02 16.11 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 26 H 0.07 0.95 4.94 -51.93 -0.26 0.70 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.62 8.11 -51.93 -0.42 0.20 16 29 H 0.08 1.03 7.67 -51.93 -0.40 0.63 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.15 0.86 8.06 -52.49 -0.42 0.43 16 32 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.16 1.59 8.06 -52.49 -0.42 1.16 16 34 H 0.12 1.95 8.14 -51.93 -0.42 1.52 16 35 H 0.13 2.15 5.28 -51.92 -0.27 1.87 16 36 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 LS Contribution 330.45 15.07 4.98 4.98 Total: -1.00 -35.08 330.45 -8.44 -43.52 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -4.69 Total: -0.38 kcal Atomic # 6 Polarization: -35.32 SS G_CDS: -2.46 Total: -37.78 kcal Atomic # 7 Polarization: -26.66 SS G_CDS: 0.74 Total: -25.92 kcal Atomic # 8 Polarization: -39.73 SS G_CDS: -1.77 Total: -41.51 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.07 Total: -3.27 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 44.52 SS G_CDS: -0.27 Total: 44.25 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.08 -8.44 -43.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358733528.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.346 kcal (2) G-P(sol) polarization free energy of solvation -35.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds