Wall clock time and date at job start Tue Mar 31 2020 11:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46931 * 2 1 4 4 H 1.08999 * 109.46909 * 302.62690 * 3 2 1 5 5 C 1.50702 * 109.46997 * 182.62775 * 3 2 1 6 6 C 1.38234 * 119.98420 * 89.18875 * 5 3 2 7 7 C 1.38187 * 120.04943 * 180.02562 * 6 5 3 8 8 C 1.38500 * 120.02488 * 359.96626 * 7 6 5 9 9 F 1.35100 * 120.01093 * 179.97438 * 8 7 6 10 10 C 1.38400 * 119.97491 * 0.02562 * 8 7 6 11 11 C 1.38442 * 119.94763 * 359.75667 * 10 8 7 12 12 F 1.35098 * 120.01531 * 180.23156 * 11 10 8 13 13 S 1.81395 * 109.47046 * 62.63191 * 3 2 1 14 14 O 1.42101 * 108.58127 * 27.40339 * 13 3 2 15 15 O 1.42104 * 108.57918 * 158.43231 * 13 3 2 16 16 C 1.81400 * 101.91828 * 272.91695 * 13 3 2 17 17 C 1.53010 * 109.47171 * 185.42989 * 16 13 3 18 18 C 1.50700 * 109.46937 * 180.02562 * 17 16 13 19 19 H 1.07999 * 120.00442 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99553 * 180.02562 * 18 17 16 21 21 N 1.31520 * 120.00287 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00037 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46838 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47087 * 119.99612 * 22 20 18 25 25 H 1.48496 * 109.47393 * 239.99917 * 22 20 18 26 26 H 1.08999 * 109.46794 * 294.19200 * 1 2 3 27 27 H 1.09004 * 109.46846 * 174.19933 * 1 2 3 28 28 H 1.08996 * 109.47050 * 54.19942 * 1 2 3 29 29 H 1.08999 * 109.47893 * 120.00329 * 2 1 3 30 30 H 1.09002 * 109.46884 * 240.00506 * 2 1 3 31 31 H 1.07995 * 119.97690 * 359.97150 * 6 5 3 32 32 H 1.07998 * 119.99055 * 179.97438 * 7 6 5 33 33 H 1.07995 * 120.02613 * 179.97438 * 10 8 7 34 34 H 1.08996 * 109.47480 * 305.42912 * 16 13 3 35 35 H 1.09000 * 109.47265 * 65.43184 * 16 13 3 36 36 H 1.09005 * 109.46618 * 300.00200 * 17 16 13 37 37 H 1.09000 * 109.46867 * 59.99951 * 17 16 13 38 38 H 0.96991 * 120.00209 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6386 1.9697 -0.8655 5 6 3.5456 1.4430 -0.0651 6 6 4.1840 1.4446 -1.2912 7 6 5.5645 1.4446 -1.3525 8 6 6.3101 1.4436 -0.1853 9 9 7.6597 1.4430 -0.2456 10 6 5.6719 1.4422 1.0428 11 6 4.2888 1.4468 1.1030 12 9 3.6645 1.4502 2.3010 13 16 1.5002 2.2746 1.5188 14 8 1.3360 1.2970 2.5369 15 8 2.3547 3.3853 1.7547 16 6 -0.1368 2.8955 1.0443 17 6 -0.7036 3.7559 2.1756 18 6 -2.0639 4.2711 1.7816 19 1 -2.4822 4.0113 0.8204 20 6 -2.7739 5.0751 2.6479 21 7 -2.2643 5.3919 3.8183 22 14 -4.4597 5.7144 2.1594 23 1 -4.8031 5.2182 0.8025 24 1 -5.4726 5.2342 3.1335 25 1 -4.4435 7.1992 2.1536 26 1 -0.3633 0.4211 0.9374 27 1 -0.3633 -1.0225 -0.1039 28 1 -0.3633 0.6011 -0.8335 29 1 1.8935 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 3.6035 1.4450 -2.2019 32 1 6.0623 1.4454 -2.3109 33 1 6.2524 1.4411 1.9534 34 1 -0.0492 3.4968 0.1395 35 1 -0.8046 2.0543 0.8582 36 1 -0.7912 3.1544 3.0804 37 1 -0.0359 4.5971 2.3617 38 1 -2.7636 5.9577 4.4276 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358733528.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:23 Heat of formation + Delta-G solvation = -161.873445 kcal Electronic energy + Delta-G solvation = -25186.170360 eV Core-core repulsion = 21177.202865 eV Total energy + Delta-G solvation = -4008.967495 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.61950 -50.09449 -40.27938 -38.09450 -36.99781 -36.40355 -35.86609 -33.23889 -32.16398 -31.74864 -27.73211 -27.64294 -24.48485 -24.04471 -23.55291 -22.12312 -20.04722 -19.40524 -19.14293 -18.39524 -17.77028 -17.42142 -17.29895 -17.02248 -16.70066 -16.54978 -16.50818 -16.35683 -15.54029 -15.20694 -15.03149 -14.98094 -14.46825 -14.30691 -14.18148 -13.76928 -13.65687 -13.11416 -13.11146 -13.01841 -12.89179 -12.83212 -12.68002 -12.52490 -12.36686 -12.12244 -12.12091 -11.96695 -11.74388 -11.32747 -10.90790 -10.66010 -10.21261 -9.81356 -8.25690 -6.41035 -1.03331 -0.26006 -0.12572 1.40893 1.42540 1.55880 1.89516 2.17951 2.38030 2.61779 2.71839 2.96518 3.07477 3.15268 3.26565 3.46659 3.63936 3.79783 3.98133 4.03827 4.08957 4.14418 4.30294 4.39356 4.57348 4.66098 4.73177 4.77405 4.78569 4.93533 5.00813 5.04601 5.14901 5.25528 5.26434 5.41167 5.60616 5.68625 6.04643 6.74035 7.29595 8.87339 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.024969 B = 0.003542 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.127077 B = 7902.772042 C = 8215.993531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.095 4.095 3 C -0.515 4.515 4 H 0.200 0.800 5 C -0.117 4.117 6 C -0.028 4.028 7 C -0.141 4.141 8 C 0.125 3.875 9 F -0.130 7.130 10 C -0.191 4.191 11 C 0.076 3.924 12 F -0.145 7.145 13 S 2.393 3.607 14 O -0.975 6.975 15 O -0.988 6.988 16 C -0.591 4.591 17 C 0.023 3.977 18 C -0.537 4.537 19 H 0.083 0.917 20 C -0.009 4.009 21 N -0.939 5.939 22 Si 0.978 3.022 23 H -0.249 1.249 24 H -0.279 1.279 25 H -0.278 1.278 26 H 0.038 0.962 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.062 0.938 30 H 0.129 0.871 31 H 0.200 0.800 32 H 0.188 0.812 33 H 0.155 0.845 34 H 0.151 0.849 35 H 0.153 0.847 36 H -0.004 1.004 37 H 0.000 1.000 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.402 -12.455 -18.194 25.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.134 4.134 3 C -0.626 4.626 4 H 0.217 0.783 5 C -0.119 4.119 6 C -0.047 4.047 7 C -0.159 4.159 8 C 0.105 3.895 9 F -0.109 7.109 10 C -0.211 4.211 11 C 0.057 3.943 12 F -0.124 7.124 13 S 2.581 3.419 14 O -0.972 6.972 15 O -0.985 6.985 16 C -0.721 4.721 17 C -0.015 4.015 18 C -0.576 4.576 19 H 0.101 0.899 20 C -0.207 4.207 21 N -0.578 5.578 22 Si 0.801 3.199 23 H -0.173 1.173 24 H -0.205 1.205 25 H -0.204 1.204 26 H 0.057 0.943 27 H 0.112 0.888 28 H 0.114 0.886 29 H 0.081 0.919 30 H 0.147 0.853 31 H 0.217 0.783 32 H 0.206 0.794 33 H 0.173 0.827 34 H 0.169 0.831 35 H 0.170 0.830 36 H 0.014 0.986 37 H 0.018 0.982 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.868 -12.285 -17.149 25.245 hybrid contribution -0.829 0.657 0.856 1.360 sum 13.038 -11.628 -16.294 23.889 Atomic orbital electron populations 1.22427 0.94442 1.05674 1.02708 1.21403 0.96646 0.89568 1.05745 1.29215 0.99362 1.11558 1.22439 0.78299 1.19289 0.92459 1.06559 0.93570 1.21258 0.93735 0.93045 0.96629 1.21703 0.94083 1.01502 0.98617 1.17481 0.77305 1.00961 0.93736 1.91542 1.28585 1.93608 1.97155 1.21081 0.92480 1.07113 1.00405 1.17955 0.92087 1.03950 0.80323 1.91452 1.81470 1.93948 1.45499 1.08793 0.78026 0.75540 0.79491 1.93473 1.86919 1.61512 1.55324 1.93472 1.65760 1.54174 1.85120 1.30525 1.19755 1.11967 1.09894 1.18779 0.97306 0.93582 0.91823 1.21598 1.01664 1.30748 1.03555 0.89882 1.26229 1.03341 0.96393 0.94714 1.70148 1.40337 1.37606 1.09734 0.85205 0.77596 0.77902 0.79181 1.17254 1.20464 1.20411 0.94283 0.88844 0.88583 0.91881 0.85302 0.78299 0.79435 0.82737 0.83127 0.82964 0.98598 0.98209 0.92465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.64 8.46 71.98 0.61 -3.03 16 2 C -0.10 -1.76 5.08 30.59 0.16 -1.60 16 3 C -0.51 -11.30 2.42 29.85 0.07 -11.23 16 4 H 0.20 2.33 8.03 -2.39 -0.02 2.31 16 5 C -0.12 -2.59 4.78 -19.81 -0.09 -2.68 16 6 C -0.03 -0.35 9.70 22.26 0.22 -0.13 16 7 C -0.14 -1.68 10.03 22.32 0.22 -1.46 16 8 C 0.12 2.32 7.30 22.37 0.16 2.48 16 9 F -0.13 -2.43 17.27 44.97 0.78 -1.66 16 10 C -0.19 -4.64 10.01 22.36 0.22 -4.42 16 11 C 0.08 2.25 6.45 22.37 0.14 2.40 16 12 F -0.14 -5.64 11.90 44.97 0.54 -5.10 16 13 S 2.39 91.87 2.54 -56.49 -0.14 91.73 16 14 O -0.98 -44.05 14.79 -127.37 -1.88 -45.93 16 15 O -0.99 -45.76 15.89 -127.37 -2.02 -47.79 16 16 C -0.59 -22.86 5.19 71.99 0.37 -22.49 16 17 C 0.02 1.29 4.97 29.85 0.15 1.44 16 18 C -0.54 -30.24 9.11 25.60 0.23 -30.00 16 19 H 0.08 4.20 7.74 -2.91 -0.02 4.18 16 20 C -0.01 -0.52 5.46 84.65 0.46 -0.05 16 21 N -0.94 -59.01 13.29 21.45 0.28 -58.73 16 22 Si 0.98 43.54 29.54 68.60 2.03 45.57 16 23 H -0.25 -10.10 7.11 99.48 0.71 -9.39 16 24 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 25 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 26 H 0.04 0.99 4.94 -2.39 -0.01 0.98 16 27 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.10 1.24 8.11 -2.39 -0.02 1.23 16 29 H 0.06 1.48 7.67 -2.39 -0.02 1.46 16 30 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.20 0.48 8.06 -2.91 -0.02 0.46 16 32 H 0.19 0.78 8.06 -2.91 -0.02 0.76 16 33 H 0.15 3.48 8.06 -2.91 -0.02 3.45 16 34 H 0.15 4.68 8.14 -2.39 -0.02 4.66 16 35 H 0.15 5.04 5.28 -2.39 -0.01 5.02 16 36 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 37 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 38 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -86.98 330.45 3.58 -83.40 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: 1.08 Total: 9.30 kcal Atomic # 6 Polarization: -73.71 SS G_CDS: 2.93 Total: -70.78 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: 0.28 Total: -58.73 kcal Atomic # 8 Polarization: -89.81 SS G_CDS: -3.91 Total: -93.72 kcal Atomic # 9 Polarization: -8.07 SS G_CDS: 1.31 Total: -6.76 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: 91.87 SS G_CDS: -0.14 Total: 91.73 kcal Total: -86.98 3.58 -83.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358733528.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.475 kcal (2) G-P(sol) polarization free energy of solvation -86.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds