Wall clock time and date at job start Tue Mar 31 2020 12:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00364 * 2 1 4 4 C 1.38565 * 120.07010 * 359.72700 * 3 2 1 5 5 C 1.38245 * 119.99806 * 179.74110 * 4 3 2 6 6 C 1.50700 * 119.92713 * 180.25232 * 5 4 3 7 7 S 1.81399 * 109.47254 * 270.25818 * 6 5 4 8 8 C 1.81400 * 102.99880 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.47465 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47392 * 179.97438 * 9 8 7 11 11 H 1.07995 * 120.00169 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99954 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00270 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99986 * 179.97438 * 12 10 9 15 15 H 1.48492 * 109.47251 * 60.00577 * 14 12 10 16 16 H 1.48505 * 109.47012 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47047 * 300.00347 * 14 12 10 18 18 C 1.38252 * 120.14696 * 0.51620 * 5 4 3 19 19 C 1.38247 * 120.14211 * 359.76128 * 18 5 4 20 20 C 1.38562 * 120.00483 * 359.97438 * 19 18 5 21 21 O 1.35988 * 120.07446 * 179.97438 * 20 19 18 22 22 C 1.42901 * 117.00171 * 0.02929 * 21 20 19 23 23 F 1.39900 * 109.46502 * 299.99662 * 22 21 20 24 24 F 1.39897 * 109.47224 * 59.99413 * 22 21 20 25 25 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46938 * 59.99845 * 1 2 3 27 27 H 1.09004 * 109.46926 * 299.99967 * 1 2 3 28 28 H 1.08004 * 120.00182 * 359.97430 * 4 3 2 29 29 H 1.09001 * 109.46743 * 30.26094 * 6 5 4 30 30 H 1.09004 * 109.47025 * 150.25983 * 6 5 4 31 31 H 1.09002 * 109.47228 * 300.00354 * 8 7 6 32 32 H 1.09001 * 109.47295 * 60.00015 * 8 7 6 33 33 H 1.09001 * 109.46612 * 300.00238 * 9 8 7 34 34 H 1.09001 * 109.46913 * 59.99707 * 9 8 7 35 35 H 0.96997 * 120.00245 * 179.97438 * 13 12 10 36 36 H 1.07996 * 119.92897 * 179.74399 * 18 5 4 37 37 H 1.08008 * 119.99679 * 179.97438 * 19 18 5 38 38 H 1.08998 * 109.47151 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2933 2.3747 -0.0057 5 6 1.9225 3.6057 -0.0003 6 6 1.1018 4.8696 -0.0008 7 16 0.7731 5.3765 -1.7112 8 6 -0.2080 6.8886 -1.5072 9 6 -0.5726 7.4496 -2.8832 10 6 -1.3881 8.7054 -2.7138 11 1 -1.6226 9.0676 -1.7237 12 6 -1.8340 9.3927 -3.8227 13 7 -1.5482 8.9520 -5.0284 14 14 -2.8456 10.9490 -3.6127 15 1 -2.0543 11.9559 -2.8610 16 1 -3.1993 11.4935 -4.9483 17 1 -4.0877 10.6345 -2.8620 18 6 3.3031 3.6798 0.0001 19 6 4.0604 2.5232 0.0000 20 6 3.4360 1.2862 0.0001 21 8 4.1796 0.1476 -0.0005 22 6 5.6004 0.3005 -0.0006 23 9 5.9932 1.0066 -1.1427 24 9 5.9936 1.0057 1.1418 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 0.2147 2.3196 -0.0106 29 1 0.1574 4.6896 0.5128 30 1 1.6502 5.6591 0.5131 31 1 -1.1197 6.6586 -0.9558 32 1 0.3736 7.6274 -0.9558 33 1 0.3389 7.6794 -3.4350 34 1 -1.1543 6.7106 -3.4343 35 1 -1.8622 9.4353 -5.8086 36 1 3.7909 4.6433 0.0001 37 1 5.1387 2.5838 -0.0002 38 1 6.0716 -0.6824 -0.0007 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359043604.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:44 Heat of formation + Delta-G solvation = -169.803399 kcal Electronic energy + Delta-G solvation = -23363.834423 eV Core-core repulsion = 19354.523060 eV Total energy + Delta-G solvation = -4009.311363 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.63697 -47.62486 -40.71467 -38.57221 -37.47110 -33.69526 -32.26358 -30.87516 -30.46117 -28.18604 -27.11183 -25.71796 -25.10616 -22.70464 -21.98403 -20.96910 -19.42114 -18.50847 -18.19800 -17.51513 -16.65626 -16.52396 -16.05527 -15.77448 -15.56465 -14.78927 -14.69082 -14.51716 -14.33866 -14.19469 -14.13637 -13.93000 -13.82178 -13.52434 -13.26007 -12.90103 -12.45883 -12.34962 -12.16627 -11.91761 -11.62047 -11.54339 -11.26067 -11.11744 -11.02126 -10.61808 -10.20410 -9.66558 -9.63484 -9.08314 -8.86420 -8.43113 -8.08596 -7.17158 -6.06940 -4.11908 0.90306 1.17136 2.26484 2.28985 3.01587 3.16281 3.19312 3.29329 3.34230 3.36493 3.57610 3.98729 4.33696 4.40569 4.48085 4.58930 4.73972 4.87625 4.95947 5.00315 5.16632 5.26577 5.28382 5.32049 5.43927 5.60004 5.86824 5.97243 6.01163 6.15932 6.29868 6.39881 6.53579 6.71092 7.19616 7.55098 7.63894 7.89039 8.26086 8.92940 9.52003 11.03780 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.022662 B = 0.002362 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.227102 B =11851.975192 C =12473.039124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.116 3.884 4 C -0.160 4.160 5 C -0.042 4.042 6 C -0.054 4.054 7 S -0.273 6.273 8 C -0.062 4.062 9 C 0.038 3.962 10 C -0.522 4.522 11 H 0.057 0.943 12 C 0.060 3.940 13 N -0.891 5.891 14 Si 0.897 3.103 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.276 1.276 18 C -0.101 4.101 19 C -0.151 4.151 20 C 0.071 3.929 21 O -0.311 6.311 22 C 0.410 3.590 23 F -0.198 7.198 24 F -0.201 7.201 25 H 0.101 0.899 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.141 0.859 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.263 0.737 36 H 0.134 0.866 37 H 0.140 0.860 38 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.697 -20.138 13.497 26.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.222 6.222 3 C 0.071 3.929 4 C -0.180 4.180 5 C -0.044 4.044 6 C -0.201 4.201 7 S -0.043 6.043 8 C -0.210 4.210 9 C 0.000 4.000 10 C -0.562 4.562 11 H 0.075 0.925 12 C -0.142 4.142 13 N -0.529 5.529 14 Si 0.725 3.275 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.202 1.202 18 C -0.121 4.121 19 C -0.170 4.170 20 C 0.027 3.973 21 O -0.228 6.228 22 C 0.319 3.681 23 F -0.180 7.180 24 F -0.183 7.183 25 H 0.119 0.881 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.159 0.841 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.152 0.848 37 H 0.158 0.842 38 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 12.004 -20.918 12.363 27.102 hybrid contribution -0.958 1.889 1.102 2.387 sum 11.045 -19.029 13.465 25.796 Atomic orbital electron populations 1.23122 0.78087 1.04076 1.01768 1.86134 1.21444 1.25640 1.88979 1.18060 0.88556 0.85337 1.00981 1.20969 1.00351 0.90558 1.06139 1.19098 0.93408 0.93048 0.98825 1.22231 1.01926 0.97223 0.98755 1.87240 1.72050 1.36265 1.08722 1.23725 0.98752 0.92803 1.05690 1.18892 0.97309 0.95605 0.88232 1.21055 1.33734 1.08714 0.92737 0.92511 1.25014 0.96219 0.97833 0.95180 1.69960 1.45581 1.39731 0.97627 0.86579 0.80543 0.83135 0.77291 1.20139 1.21149 1.20158 1.20787 0.92692 0.98295 1.00355 1.21314 1.00804 0.90806 1.04041 1.18018 0.88077 0.85202 1.06032 1.86681 1.16558 1.30572 1.89029 1.23377 0.80540 0.92307 0.71838 1.93111 1.90700 1.82164 1.52044 1.93092 1.90723 1.82287 1.52156 0.88100 0.92142 0.92559 0.84091 0.89535 0.89277 0.91387 0.91330 0.95526 0.95565 0.92691 0.84770 0.84211 0.80324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.72 10.28 -34.21 -0.35 -4.08 16 3 C 0.12 1.51 6.70 -39.12 -0.26 1.25 16 4 C -0.16 -2.00 8.69 -39.46 -0.34 -2.34 16 5 C -0.04 -0.56 5.14 -104.61 -0.54 -1.10 16 6 C -0.05 -0.74 6.06 36.01 0.22 -0.52 16 7 S -0.27 -5.02 21.72 -107.50 -2.33 -7.35 16 8 C -0.06 -1.28 5.88 37.16 0.22 -1.06 16 9 C 0.04 0.99 4.98 -27.88 -0.14 0.86 16 10 C -0.52 -14.58 9.11 -34.44 -0.31 -14.90 16 11 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 14 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 C -0.10 -1.28 9.69 -39.57 -0.38 -1.66 16 19 C -0.15 -1.86 8.26 -39.46 -0.33 -2.18 16 20 C 0.07 0.91 6.50 -39.12 -0.25 0.66 16 21 O -0.31 -3.49 10.22 -34.20 -0.35 -3.84 16 22 C 0.41 3.16 5.98 101.05 0.60 3.76 16 23 F -0.20 -1.91 15.58 2.25 0.04 -1.87 16 24 F -0.20 -1.80 15.59 2.25 0.04 -1.76 16 25 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.49 7.65 -51.93 -0.40 0.09 16 27 H 0.06 0.40 7.68 -51.93 -0.40 0.00 16 28 H 0.14 1.53 6.30 -52.48 -0.33 1.20 16 29 H 0.09 1.07 8.09 -51.92 -0.42 0.65 16 30 H 0.09 1.12 8.08 -51.92 -0.42 0.70 16 31 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 32 H 0.07 1.36 8.14 -51.92 -0.42 0.93 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.14 1.55 5.10 -52.48 -0.27 1.29 16 38 H 0.18 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 345.64 15.07 5.21 5.21 Total: -1.00 -32.84 345.64 -7.40 -40.24 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -4.73 Total: -2.48 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -0.62 Total: -14.45 kcal Atomic # 7 Polarization: -26.68 SS G_CDS: 0.74 Total: -25.94 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -0.70 Total: -7.92 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.07 Total: -3.63 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -5.02 SS G_CDS: -2.33 Total: -7.35 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.84 -7.40 -40.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359043604.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.561 kcal (2) G-P(sol) polarization free energy of solvation -32.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds