Wall clock time and date at job start Tue Mar 31 2020 12:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00364 * 2 1 4 4 C 1.38565 * 120.07010 * 359.72700 * 3 2 1 5 5 C 1.38245 * 119.99806 * 179.74110 * 4 3 2 6 6 C 1.50700 * 119.92713 * 180.25232 * 5 4 3 7 7 S 1.81399 * 109.47254 * 270.25818 * 6 5 4 8 8 C 1.81400 * 102.99880 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.47465 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47392 * 179.97438 * 9 8 7 11 11 H 1.07995 * 120.00169 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99954 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00270 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99986 * 179.97438 * 12 10 9 15 15 H 1.48492 * 109.47251 * 60.00577 * 14 12 10 16 16 H 1.48505 * 109.47012 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47047 * 300.00347 * 14 12 10 18 18 C 1.38252 * 120.14696 * 0.51620 * 5 4 3 19 19 C 1.38247 * 120.14211 * 359.76128 * 18 5 4 20 20 C 1.38562 * 120.00483 * 359.97438 * 19 18 5 21 21 O 1.35988 * 120.07446 * 179.97438 * 20 19 18 22 22 C 1.42901 * 117.00171 * 0.02929 * 21 20 19 23 23 F 1.39900 * 109.46502 * 299.99662 * 22 21 20 24 24 F 1.39897 * 109.47224 * 59.99413 * 22 21 20 25 25 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46938 * 59.99845 * 1 2 3 27 27 H 1.09004 * 109.46926 * 299.99967 * 1 2 3 28 28 H 1.08004 * 120.00182 * 359.97430 * 4 3 2 29 29 H 1.09001 * 109.46743 * 30.26094 * 6 5 4 30 30 H 1.09004 * 109.47025 * 150.25983 * 6 5 4 31 31 H 1.09002 * 109.47228 * 300.00354 * 8 7 6 32 32 H 1.09001 * 109.47295 * 60.00015 * 8 7 6 33 33 H 1.09001 * 109.46612 * 300.00238 * 9 8 7 34 34 H 1.09001 * 109.46913 * 59.99707 * 9 8 7 35 35 H 0.96997 * 120.00245 * 179.97438 * 13 12 10 36 36 H 1.07996 * 119.92897 * 179.74399 * 18 5 4 37 37 H 1.08008 * 119.99679 * 179.97438 * 19 18 5 38 38 H 1.08998 * 109.47151 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2933 2.3747 -0.0057 5 6 1.9225 3.6057 -0.0003 6 6 1.1018 4.8696 -0.0008 7 16 0.7731 5.3765 -1.7112 8 6 -0.2080 6.8886 -1.5072 9 6 -0.5726 7.4496 -2.8832 10 6 -1.3881 8.7054 -2.7138 11 1 -1.6226 9.0676 -1.7237 12 6 -1.8340 9.3927 -3.8227 13 7 -1.5482 8.9520 -5.0284 14 14 -2.8456 10.9490 -3.6127 15 1 -2.0543 11.9559 -2.8610 16 1 -3.1993 11.4935 -4.9483 17 1 -4.0877 10.6345 -2.8620 18 6 3.3031 3.6798 0.0001 19 6 4.0604 2.5232 0.0000 20 6 3.4360 1.2862 0.0001 21 8 4.1796 0.1476 -0.0005 22 6 5.6004 0.3005 -0.0006 23 9 5.9932 1.0066 -1.1427 24 9 5.9936 1.0057 1.1418 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 0.2147 2.3196 -0.0106 29 1 0.1574 4.6896 0.5128 30 1 1.6502 5.6591 0.5131 31 1 -1.1197 6.6586 -0.9558 32 1 0.3736 7.6274 -0.9558 33 1 0.3389 7.6794 -3.4350 34 1 -1.1543 6.7106 -3.4343 35 1 -1.8622 9.4353 -5.8086 36 1 3.7909 4.6433 0.0001 37 1 5.1387 2.5838 -0.0002 38 1 6.0716 -0.6824 -0.0007 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359043604.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:43 Heat of formation + Delta-G solvation = -188.369577 kcal Electronic energy + Delta-G solvation = -23364.639513 eV Core-core repulsion = 19354.523060 eV Total energy + Delta-G solvation = -4010.116453 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.30192 -48.29948 -41.60302 -39.39195 -38.37595 -35.77116 -33.23766 -32.89831 -31.37458 -29.04340 -27.87230 -27.31719 -26.34285 -23.57379 -23.36487 -22.49786 -20.21861 -19.24626 -18.88036 -18.66889 -18.37877 -17.46954 -17.06200 -16.78737 -16.61172 -16.51300 -15.77686 -15.62254 -15.44562 -15.12948 -15.10167 -14.92248 -14.85182 -14.62161 -14.22487 -14.16840 -13.60451 -13.54586 -13.43380 -12.94823 -12.93744 -12.88918 -12.51315 -12.44826 -12.14741 -12.11654 -12.03962 -11.66973 -11.29304 -10.82336 -10.60141 -9.83862 -9.04266 -8.63740 -8.22854 -6.36794 -0.13999 0.21464 0.98359 1.41320 1.44454 1.52624 1.59624 1.76369 2.22198 2.40590 2.55436 2.60674 3.10263 3.48013 3.50773 3.67093 3.70803 3.89210 3.97482 4.20836 4.22544 4.28298 4.38572 4.39242 4.40211 4.50841 4.60109 4.73476 4.88112 4.93011 5.06212 5.38451 5.38745 5.43006 5.50099 5.67395 5.73947 6.10997 6.33720 6.77830 7.32856 8.88680 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.022662 B = 0.002362 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.227102 B =11851.975192 C =12473.039124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.323 6.323 3 C 0.103 3.897 4 C -0.159 4.159 5 C -0.058 4.058 6 C -0.033 4.033 7 S -0.309 6.309 8 C -0.050 4.050 9 C 0.045 3.955 10 C -0.542 4.542 11 H 0.069 0.931 12 C 0.000 4.000 13 N -0.933 5.933 14 Si 0.972 3.028 15 H -0.265 1.265 16 H -0.284 1.284 17 H -0.264 1.264 18 C -0.105 4.105 19 C -0.157 4.157 20 C 0.063 3.937 21 O -0.322 6.322 22 C 0.404 3.596 23 F -0.211 7.211 24 F -0.208 7.208 25 H 0.124 0.876 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.155 0.845 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.078 0.922 33 H -0.006 1.006 34 H -0.005 1.005 35 H 0.265 0.735 36 H 0.145 0.855 37 H 0.148 0.852 38 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.607 -20.474 15.289 28.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.237 6.237 3 C 0.057 3.943 4 C -0.179 4.179 5 C -0.060 4.060 6 C -0.180 4.180 7 S -0.080 6.080 8 C -0.198 4.198 9 C 0.006 3.994 10 C -0.582 4.582 11 H 0.087 0.913 12 C -0.198 4.198 13 N -0.572 5.572 14 Si 0.795 3.205 15 H -0.189 1.189 16 H -0.210 1.210 17 H -0.189 1.189 18 C -0.125 4.125 19 C -0.176 4.176 20 C 0.019 3.981 21 O -0.240 6.240 22 C 0.315 3.685 23 F -0.193 7.193 24 F -0.190 7.190 25 H 0.142 0.858 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.172 0.828 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.013 0.987 34 H 0.013 0.987 35 H 0.074 0.926 36 H 0.163 0.837 37 H 0.166 0.834 38 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 11.911 -21.252 14.168 28.183 hybrid contribution -0.838 1.818 0.578 2.084 sum 11.073 -19.434 14.746 26.791 Atomic orbital electron populations 1.23392 0.76292 1.05841 1.02256 1.86116 1.23351 1.25313 1.88902 1.18252 0.88972 0.85828 1.01245 1.21146 1.01122 0.90304 1.05354 1.19107 0.93610 0.92956 1.00314 1.22246 1.03206 0.97810 0.94756 1.87330 1.71628 1.35004 1.13991 1.23345 0.99916 0.94217 1.02299 1.18665 0.95176 0.94840 0.90697 1.21532 1.33816 1.09452 0.93391 0.91323 1.26040 0.97432 1.01595 0.94729 1.70111 1.46979 1.41510 0.98632 0.85401 0.79041 0.78576 0.77434 1.18924 1.20952 1.18868 1.20990 0.92743 0.98948 0.99859 1.21442 1.01270 0.90706 1.04175 1.18275 0.88623 0.85882 1.05342 1.86676 1.18337 1.30148 1.88830 1.24307 0.79154 0.94152 0.70911 1.93084 1.90631 1.82751 1.52816 1.93073 1.90593 1.82773 1.52588 0.85819 0.92302 0.91348 0.82775 0.87750 0.87708 0.90279 0.90375 0.98735 0.98653 0.92580 0.83736 0.83417 0.74905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.36 16 2 O -0.32 -7.46 10.28 -79.59 -0.82 -8.28 16 3 C 0.10 2.58 6.70 22.57 0.15 2.73 16 4 C -0.16 -3.79 8.69 22.35 0.19 -3.59 16 5 C -0.06 -1.46 5.14 -19.86 -0.10 -1.56 16 6 C -0.03 -0.85 6.06 71.24 0.43 -0.42 16 7 S -0.31 -11.31 21.72 -56.49 -1.23 -12.54 16 8 C -0.05 -2.06 5.88 71.98 0.42 -1.63 16 9 C 0.04 2.39 4.98 29.85 0.15 2.54 16 10 C -0.54 -30.52 9.11 25.60 0.23 -30.29 16 11 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 12 C 0.00 0.03 5.46 84.65 0.46 0.49 16 13 N -0.93 -57.18 13.29 21.45 0.28 -56.89 16 14 Si 0.97 43.61 29.54 68.60 2.03 45.64 16 15 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 16 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 17 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 18 C -0.11 -2.55 9.69 22.28 0.22 -2.33 16 19 C -0.16 -3.74 8.26 22.35 0.18 -3.56 16 20 C 0.06 1.58 6.50 22.57 0.15 1.72 16 21 O -0.32 -6.85 10.22 -79.55 -0.81 -7.66 16 22 C 0.40 5.50 5.98 113.37 0.68 6.18 16 23 F -0.21 -3.81 15.58 44.97 0.70 -3.11 16 24 F -0.21 -3.43 15.59 44.97 0.70 -2.73 16 25 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.06 0.89 7.65 -2.39 -0.02 0.87 16 27 H 0.07 0.85 7.68 -2.38 -0.02 0.83 16 28 H 0.15 3.12 6.30 -2.91 -0.02 3.10 16 29 H 0.10 2.32 8.09 -2.39 -0.02 2.30 16 30 H 0.10 2.38 8.08 -2.39 -0.02 2.36 16 31 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 32 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 33 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 34 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 35 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 36 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 37 H 0.15 3.17 5.10 -2.91 -0.01 3.15 16 38 H 0.24 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -72.41 345.64 6.21 -66.20 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: 1.08 Total: 7.74 kcal Atomic # 6 Polarization: -32.65 SS G_CDS: 4.28 Total: -28.37 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: 0.28 Total: -56.89 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -1.63 Total: -15.93 kcal Atomic # 9 Polarization: -7.24 SS G_CDS: 1.40 Total: -5.84 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -11.31 SS G_CDS: -1.23 Total: -12.54 kcal Total: -72.41 6.21 -66.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359043604.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.172 kcal (2) G-P(sol) polarization free energy of solvation -72.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds