Wall clock time and date at job start Tue Mar 31 2020 11:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50700 * 120.00115 * 2 1 4 4 N 1.46501 * 109.47233 * 124.99857 * 3 2 1 5 5 C 1.46501 * 120.00032 * 262.72366 * 4 3 2 6 6 C 1.50699 * 109.46456 * 269.99848 * 5 4 3 7 7 H 1.08001 * 120.00634 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99668 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00323 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99994 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47386 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47151 * 119.99637 * 10 8 6 13 13 H 1.48495 * 109.47243 * 239.99762 * 10 8 6 14 14 C 1.34778 * 119.99897 * 82.71547 * 4 3 2 15 15 O 1.21647 * 120.00079 * 182.39032 * 14 4 3 16 16 C 1.47025 * 119.99882 * 2.40214 * 14 4 3 17 17 C 1.35885 * 125.43054 * 168.26675 * 16 14 4 18 18 C 1.41572 * 107.72791 * 179.97438 * 17 16 14 19 19 C 1.40131 * 133.34748 * 180.02562 * 18 17 16 20 20 C 1.36413 * 119.84418 * 179.73268 * 19 18 17 21 21 C 1.39064 * 120.60396 * 0.51818 * 20 19 18 22 22 Cl 1.73601 * 119.69407 * 179.73440 * 21 20 19 23 23 C 1.37797 * 120.61704 * 359.45884 * 21 20 19 24 24 C 1.39204 * 119.80179 * 0.27259 * 23 21 20 25 25 N 1.37483 * 133.16093 * 180.02562 * 24 23 21 26 26 H 0.97000 * 125.61226 * 359.95923 * 25 24 23 27 27 H 1.08005 * 120.00420 * 0.02562 * 1 2 3 28 28 H 1.08006 * 120.00267 * 180.02562 * 1 2 3 29 29 H 1.07998 * 119.99920 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.46842 * 4.99999 * 3 2 1 31 31 H 1.09004 * 109.46951 * 244.99745 * 3 2 1 32 32 H 1.08990 * 109.47051 * 29.99441 * 5 4 3 33 33 H 1.08994 * 109.47044 * 150.00376 * 5 4 3 34 34 H 0.96998 * 120.00460 * 180.02562 * 9 8 6 35 35 H 1.07992 * 126.13217 * 0.02562 * 17 16 14 36 36 H 1.07993 * 120.07619 * 359.97438 * 19 18 17 37 37 H 1.08004 * 119.69903 * 180.27555 * 20 19 18 38 38 H 1.07999 * 120.10342 * 180.29926 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.6152 2.0074 2.3751 6 6 3.0442 3.4507 2.3133 7 1 3.5487 3.8271 1.4357 8 6 2.7935 4.2905 3.3778 9 7 2.1796 3.8321 4.4467 10 14 3.3259 6.0794 3.3016 11 1 3.9907 6.3431 2.0002 12 1 2.1349 6.9564 3.4350 13 1 4.2746 6.3611 4.4087 14 6 4.1977 0.7350 1.0282 15 8 4.9527 0.7195 1.9819 16 6 4.5987 0.1028 -0.2371 17 6 5.8516 -0.3267 -0.5408 18 6 5.8157 -0.8719 -1.8468 19 6 6.7859 -1.4554 -2.6726 20 6 6.4402 -1.9045 -3.9134 21 6 5.1337 -1.7793 -4.3731 22 17 4.7214 -2.3528 -5.9589 23 6 4.1621 -1.2095 -3.5793 24 6 4.4901 -0.7489 -2.3073 25 7 3.7614 -0.1503 -1.3070 26 1 2.8154 0.0605 -1.3460 27 1 -0.5401 0.9353 -0.0004 28 1 -0.5401 -0.9353 0.0004 29 1 1.8499 -0.9353 -0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6213 1.4025 -0.9314 32 1 1.5340 1.9548 2.5025 33 1 3.1046 1.5186 3.2175 34 1 2.0029 4.4230 5.1954 35 1 6.7189 -0.2642 0.0997 36 1 7.8041 -1.5529 -2.3259 37 1 7.1889 -2.3579 -4.5461 38 1 3.1490 -1.1208 -3.9428 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359445202.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:14 Heat of formation + Delta-G solvation = 46.441013 kcal Electronic energy + Delta-G solvation = -23555.922089 eV Core-core repulsion = 20004.633267 eV Total energy + Delta-G solvation = -3551.288822 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.89631 -40.56978 -38.38238 -37.69735 -36.87375 -35.23685 -33.90209 -33.19421 -31.07937 -30.15165 -29.28735 -27.27936 -25.90471 -23.96293 -23.14303 -22.03747 -21.62133 -20.45105 -18.94368 -18.73138 -18.44077 -17.43467 -16.81316 -16.59297 -16.36538 -16.09755 -15.72610 -15.44889 -15.30657 -14.80705 -14.59347 -14.37017 -14.25664 -14.03772 -13.74194 -13.42754 -13.22253 -12.98954 -12.92038 -12.64383 -12.41763 -12.32700 -12.27303 -11.94391 -11.82797 -11.71970 -11.10744 -10.89800 -10.69206 -10.57753 -9.71976 -9.30254 -8.84560 -8.26427 -6.41488 -0.39937 0.48384 0.94362 1.03681 1.09184 1.35913 1.38625 1.50179 1.92053 2.09342 2.34256 2.38611 2.73243 3.03870 3.37913 3.62244 3.74279 3.96338 4.01279 4.05968 4.13186 4.20548 4.33036 4.50038 4.59569 4.78379 4.82820 4.87719 4.93107 5.14616 5.20067 5.30277 5.38093 5.47127 5.51156 5.55398 5.63054 5.74363 5.88296 5.98709 6.28744 6.47695 6.66452 7.08547 7.30629 8.81107 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.019444 B = 0.003160 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.673045 B = 8860.029039 C = 9422.025069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.227 4.227 3 C 0.115 3.885 4 N -0.589 5.589 5 C 0.263 3.737 6 C -0.547 4.547 7 H 0.053 0.947 8 C 0.012 3.988 9 N -0.925 5.925 10 Si 0.968 3.032 11 H -0.268 1.268 12 H -0.268 1.268 13 H -0.281 1.281 14 C 0.565 3.435 15 O -0.571 6.571 16 C 0.018 3.982 17 C -0.117 4.117 18 C -0.130 4.130 19 C -0.045 4.045 20 C -0.140 4.140 21 C -0.007 4.007 22 Cl -0.060 7.060 23 C -0.124 4.124 24 C 0.105 3.895 25 N -0.572 5.572 26 H 0.435 0.565 27 H 0.111 0.889 28 H 0.126 0.874 29 H 0.111 0.889 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.031 0.969 33 H 0.004 0.996 34 H 0.269 0.731 35 H 0.156 0.844 36 H 0.158 0.842 37 H 0.159 0.841 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.259 -12.068 -20.790 24.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.246 4.246 3 C -0.008 4.008 4 N -0.318 5.318 5 C 0.143 3.857 6 C -0.586 4.586 7 H 0.072 0.928 8 C -0.187 4.187 9 N -0.564 5.564 10 Si 0.792 3.208 11 H -0.193 1.193 12 H -0.193 1.193 13 H -0.207 1.207 14 C 0.353 3.647 15 O -0.451 6.451 16 C -0.092 4.092 17 C -0.144 4.144 18 C -0.135 4.135 19 C -0.064 4.064 20 C -0.160 4.160 21 C -0.035 4.035 22 Cl -0.031 7.031 23 C -0.146 4.146 24 C -0.006 4.006 25 N -0.187 5.187 26 H 0.287 0.713 27 H 0.130 0.870 28 H 0.144 0.856 29 H 0.128 0.872 30 H 0.118 0.882 31 H 0.111 0.889 32 H 0.049 0.951 33 H 0.022 0.978 34 H 0.078 0.922 35 H 0.173 0.827 36 H 0.175 0.825 37 H 0.176 0.824 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.308 -11.973 -20.181 23.502 hybrid contribution -0.343 1.051 0.628 1.272 sum 0.965 -10.922 -19.553 22.417 Atomic orbital electron populations 1.24254 0.94842 1.03961 0.93470 1.23321 0.97609 0.97382 1.06266 1.21229 0.93025 0.97764 0.88757 1.48146 1.14883 1.52452 1.16369 1.18854 0.95009 0.90984 0.80852 1.21691 1.38842 0.95404 1.02616 0.92843 1.25817 0.94780 1.03629 0.94517 1.70043 1.42150 1.37701 1.06494 0.85366 0.78320 0.78909 0.78207 1.19265 1.19315 1.20672 1.17702 0.81890 0.78644 0.86458 1.90778 1.53013 1.61789 1.39542 1.20051 0.92393 1.07739 0.89059 1.21045 0.95977 1.01303 0.96115 1.18461 0.94137 1.05795 0.95076 1.20627 0.99265 0.94375 0.92092 1.20764 0.94895 1.03443 0.96848 1.20615 0.94675 1.00745 0.87511 1.98374 1.93912 1.87319 1.23453 1.19947 1.00846 1.03018 0.90760 1.18392 0.91719 0.99368 0.91130 1.43484 1.12218 1.51515 1.11532 0.71348 0.87038 0.85601 0.87160 0.88172 0.88926 0.95131 0.97786 0.92248 0.82660 0.82476 0.82382 0.83254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 14.32 67.79 0.97 -1.57 16 2 C -0.23 -5.64 7.90 25.65 0.20 -5.44 16 3 C 0.11 3.56 5.40 85.63 0.46 4.03 16 4 N -0.59 -25.34 2.46 -834.86 -2.06 -27.39 16 5 C 0.26 14.04 5.15 85.63 0.44 14.48 16 6 C -0.55 -31.12 9.39 25.60 0.24 -30.88 16 7 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 8 C 0.01 0.69 5.46 84.66 0.46 1.15 16 9 N -0.92 -54.87 13.29 21.45 0.28 -54.58 16 10 Si 0.97 44.31 29.54 68.60 2.03 46.33 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 12 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 13 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 14 C 0.56 24.99 7.57 86.55 0.66 25.64 16 15 O -0.57 -30.42 16.43 -4.18 -0.07 -30.49 16 16 C 0.02 0.60 6.56 39.90 0.26 0.87 16 17 C -0.12 -3.66 10.55 22.55 0.24 -3.42 16 18 C -0.13 -3.32 6.16 -21.35 -0.13 -3.45 16 19 C -0.04 -0.85 10.06 22.30 0.22 -0.63 16 20 C -0.14 -2.31 9.74 22.04 0.21 -2.09 16 21 C -0.01 -0.13 6.32 22.36 0.14 0.01 16 22 Cl -0.06 -0.93 28.93 -2.72 -0.08 -1.01 16 23 C -0.12 -2.44 9.84 22.40 0.22 -2.22 16 24 C 0.11 2.58 7.25 39.13 0.28 2.86 16 25 N -0.57 -15.40 4.51 -177.18 -0.80 -16.20 16 26 H 0.43 10.19 3.46 -92.71 -0.32 9.87 16 27 H 0.11 2.10 7.84 -2.91 -0.02 2.08 16 28 H 0.13 1.92 8.06 -2.91 -0.02 1.90 16 29 H 0.11 2.77 7.35 -2.91 -0.02 2.75 16 30 H 0.10 3.10 7.67 -2.39 -0.02 3.08 16 31 H 0.09 2.53 5.13 -2.39 -0.01 2.52 16 32 H 0.03 1.63 8.07 -2.39 -0.02 1.61 16 33 H 0.00 0.25 7.39 -2.39 -0.02 0.23 16 34 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 35 H 0.16 4.71 8.06 -2.91 -0.02 4.69 16 36 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 37 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 38 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -71.15 341.45 4.98 -66.18 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.78 Total: 17.83 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: 4.89 Total: -0.66 kcal Atomic # 7 Polarization: -95.61 SS G_CDS: -2.57 Total: -98.18 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -0.07 Total: -30.49 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -0.08 Total: -1.01 kcal Total: -71.15 4.98 -66.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359445202.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.620 kcal (2) G-P(sol) polarization free energy of solvation -71.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds