Wall clock time and date at job start Tue Mar 31 2020 12:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47352 * 2 1 4 4 C 1.50698 * 109.47203 * 239.99655 * 2 1 3 5 5 H 1.08004 * 120.00032 * 240.00378 * 4 2 1 6 6 C 1.37879 * 120.00118 * 60.00308 * 4 2 1 7 7 N 1.31513 * 119.99745 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00123 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47425 * 59.99936 * 8 6 4 10 10 H 1.48503 * 109.47042 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47320 * 299.99802 * 8 6 4 12 12 N 1.46500 * 109.47033 * 119.99762 * 2 1 3 13 13 C 1.34778 * 120.00142 * 274.99884 * 12 2 1 14 14 O 1.21588 * 119.99723 * 359.97438 * 13 12 2 15 15 N 1.34782 * 120.00100 * 179.97438 * 13 12 2 16 16 C 1.39935 * 119.99751 * 184.60804 * 15 13 12 17 17 C 1.38937 * 119.94957 * 144.88800 * 16 15 13 18 18 C 1.37907 * 120.05120 * 179.97438 * 17 16 15 19 19 C 1.39355 * 119.94884 * 359.97169 * 18 17 16 20 20 C 1.48421 * 120.04908 * 180.02562 * 19 18 17 21 21 C 1.36464 * 123.95206 * 180.02562 * 20 19 18 22 22 S 1.72102 * 104.12976 * 180.28741 * 21 20 19 23 23 N 1.56455 * 96.04059 * 359.62836 * 22 21 20 24 24 N 1.27504 * 109.53124 * 0.38672 * 23 22 21 25 25 C 1.39358 * 119.90010 * 0.27851 * 19 18 17 26 26 C 1.37907 * 119.94985 * 359.46993 * 25 19 18 27 27 H 1.09005 * 109.47409 * 300.00467 * 1 2 3 28 28 H 1.09002 * 109.46774 * 59.99929 * 1 2 3 29 29 H 1.09003 * 109.47352 * 179.97438 * 1 2 3 30 30 H 0.96998 * 120.00142 * 179.97438 * 7 6 4 31 31 H 0.97006 * 120.00149 * 94.99992 * 12 2 1 32 32 H 0.96998 * 119.99487 * 4.60466 * 15 13 12 33 33 H 1.07999 * 119.97951 * 359.97100 * 17 16 15 34 34 H 1.08005 * 120.02517 * 179.97438 * 18 17 16 35 35 H 1.07996 * 127.93232 * 0.02562 * 21 20 19 36 36 H 1.08001 * 120.02306 * 179.72227 * 25 19 18 37 37 H 1.07999 * 119.97581 * 180.25389 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3214 -1.1205 -4.0078 9 1 1.8258 -2.5203 -4.0076 10 1 1.8270 -0.4201 -5.2204 11 1 3.8064 -1.1212 -4.0081 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8583 1.1617 2.4116 15 7 2.5958 -0.6536 3.4578 16 6 2.6383 0.0177 4.6848 17 6 2.3769 -0.6719 5.8623 18 6 2.4187 -0.0125 7.0727 19 6 2.7240 1.3466 7.1144 20 6 2.7702 2.0584 8.4159 21 6 3.0596 3.3853 8.5491 22 16 2.9811 3.6643 10.2455 23 7 2.6058 2.1966 10.6365 24 7 2.5359 1.4798 9.5844 25 6 2.9807 2.0375 5.9317 26 6 2.9429 1.3728 4.7239 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 0.7088 1.1611 -3.4844 31 1 2.2490 -1.6318 1.1527 32 1 2.8892 -1.5763 3.3993 33 1 2.1407 -1.7253 5.8297 34 1 2.2150 -0.5489 7.9878 35 1 3.2896 4.0962 7.7693 36 1 3.2131 3.0918 5.9612 37 1 3.1458 1.9069 3.8075 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360094715.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:49 Heat of formation + Delta-G solvation = 70.356281 kcal Electronic energy + Delta-G solvation = -22598.581950 eV Core-core repulsion = 19082.666629 eV Total energy + Delta-G solvation = -3515.915321 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.18097 -40.19517 -38.41892 -35.33944 -34.42876 -32.81352 -32.23294 -31.01721 -29.46668 -28.14117 -27.12819 -25.29630 -23.52367 -22.88217 -21.51795 -20.90303 -19.90644 -18.95242 -18.16737 -17.58243 -16.53835 -15.97054 -15.94549 -15.45801 -15.13350 -15.01738 -14.41018 -14.16270 -13.90374 -13.49149 -13.18854 -12.96010 -12.89051 -12.44500 -12.25867 -11.95967 -11.79863 -11.32110 -11.14799 -11.03511 -10.86240 -10.71411 -10.42039 -10.36421 -10.27239 -10.14329 -9.73471 -9.46038 -9.10547 -8.93221 -8.61153 -8.13347 -7.73993 -6.16869 -4.26446 -0.10523 0.82637 0.92186 1.39320 1.42421 2.29836 3.08519 3.22656 3.28355 3.30035 3.61865 3.70172 3.97126 4.28309 4.46041 4.68212 4.82181 4.93048 5.00750 5.13837 5.15762 5.36020 5.55724 5.63780 6.03789 6.22301 6.37251 6.44951 6.59229 6.75202 6.93053 7.06006 7.09465 7.17369 7.38840 7.48199 7.57050 7.77145 7.93196 8.10338 8.65912 8.77862 9.14803 9.41602 10.89089 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.041116 B = 0.002122 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.832703 B =13192.620176 C =13505.980364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.281 3.719 3 H 0.050 0.950 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.717 5.717 13 C 0.692 3.308 14 O -0.580 6.580 15 N -0.697 5.697 16 C 0.199 3.801 17 C -0.158 4.158 18 C -0.062 4.062 19 C -0.059 4.059 20 C 0.085 3.915 21 C -0.295 4.295 22 S 0.422 5.578 23 N -0.288 5.288 24 N -0.233 5.233 25 C -0.073 4.073 26 C -0.123 4.123 27 H 0.015 0.985 28 H 0.091 0.909 29 H 0.026 0.974 30 H 0.266 0.734 31 H 0.387 0.613 32 H 0.404 0.596 33 H 0.129 0.871 34 H 0.134 0.866 35 H 0.200 0.800 36 H 0.126 0.874 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.390 2.318 21.242 22.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.179 3.821 3 H 0.068 0.932 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.731 3.269 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.368 5.368 13 C 0.393 3.607 14 O -0.458 6.458 15 N -0.344 5.344 16 C 0.102 3.898 17 C -0.180 4.180 18 C -0.081 4.081 19 C -0.063 4.063 20 C -0.057 4.057 21 C -0.451 4.451 22 S 0.558 5.442 23 N -0.267 5.267 24 N -0.101 5.101 25 C -0.093 4.093 26 C -0.144 4.144 27 H 0.034 0.966 28 H 0.109 0.891 29 H 0.045 0.955 30 H 0.076 0.924 31 H 0.219 0.781 32 H 0.239 0.761 33 H 0.147 0.853 34 H 0.152 0.848 35 H 0.217 0.783 36 H 0.144 0.856 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 4.781 3.365 22.930 23.664 hybrid contribution 0.560 -1.522 -2.556 3.027 sum 5.341 1.842 20.374 21.143 Atomic orbital electron populations 1.22110 0.98478 0.99152 1.00986 1.18697 0.90895 0.93744 0.78778 0.93219 1.21158 1.32675 1.13336 0.90225 0.92105 1.24882 0.94786 0.94972 0.99055 1.69889 1.35636 1.22364 1.24089 0.86480 0.79141 0.79567 0.81730 1.20158 1.21105 1.20175 1.45896 1.68332 1.13373 1.09197 1.16171 0.78649 0.85521 0.80396 1.90872 1.56984 1.14037 1.83907 1.42931 1.68267 1.16459 1.06735 1.17734 0.95238 0.92395 0.84462 1.20842 1.05169 1.00781 0.91165 1.20940 0.96607 0.92919 0.97679 1.17588 1.07454 0.93403 0.87895 1.20857 1.00747 0.90541 0.93561 1.28273 1.11402 1.00606 1.04841 1.81395 1.49123 1.17405 0.96275 1.78785 1.21435 1.03405 1.23094 1.71355 1.15732 1.28652 0.94378 1.20971 0.98155 0.99495 0.90676 1.21356 1.00313 0.93872 0.98842 0.96559 0.89053 0.95486 0.92441 0.78081 0.76053 0.85283 0.84848 0.78320 0.85587 0.83164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.26 37.15 0.34 -3.29 16 2 C 0.28 6.93 2.56 -69.09 -0.18 6.76 16 3 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 4 C -0.54 -13.78 8.73 -34.44 -0.30 -14.08 16 5 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.36 11.32 55.43 0.63 -23.73 16 8 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 9 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 12 N -0.72 -14.27 5.07 -59.81 -0.30 -14.57 16 13 C 0.69 13.34 8.37 -86.91 -0.73 12.61 16 14 O -0.58 -13.30 13.43 5.29 0.07 -13.23 16 15 N -0.70 -10.03 5.34 -14.19 -0.08 -10.11 16 16 C 0.20 2.81 6.30 -83.64 -0.53 2.28 16 17 C -0.16 -1.86 9.95 -39.44 -0.39 -2.26 16 18 C -0.06 -0.73 9.65 -39.29 -0.38 -1.11 16 19 C -0.06 -0.71 5.88 -104.87 -0.62 -1.32 16 20 C 0.09 0.97 6.76 -84.03 -0.57 0.40 16 21 C -0.30 -2.44 10.75 30.09 0.32 -2.12 16 22 S 0.42 3.11 23.39 -107.50 -2.51 0.60 16 23 N -0.29 -3.27 12.52 60.35 0.76 -2.52 16 24 N -0.23 -2.93 11.16 32.45 0.36 -2.57 16 25 C -0.07 -0.88 9.51 -39.29 -0.37 -1.25 16 26 C -0.12 -1.80 8.68 -39.44 -0.34 -2.15 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.39 6.50 8.56 -40.82 -0.35 6.15 16 32 H 0.40 4.38 8.84 -40.82 -0.36 4.02 16 33 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.13 1.44 7.74 -52.48 -0.41 1.04 16 35 H 0.20 1.08 7.16 -52.49 -0.38 0.70 16 36 H 0.13 1.18 6.83 -52.49 -0.36 0.82 16 37 H 0.15 2.53 6.21 -52.49 -0.33 2.20 16 LS Contribution 334.16 15.07 5.04 5.04 Total: -1.00 -31.83 334.16 -8.59 -40.42 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -3.69 Total: 9.36 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -3.83 Total: -3.87 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: 1.37 Total: -53.49 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.07 Total: -13.23 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: 3.11 SS G_CDS: -2.51 Total: 0.60 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.83 -8.59 -40.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360094715.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.779 kcal (2) G-P(sol) polarization free energy of solvation -31.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds