Wall clock time and date at job start Tue Mar 31 2020 12:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47352 * 2 1 4 4 C 1.50698 * 109.47203 * 239.99655 * 2 1 3 5 5 H 1.08004 * 120.00032 * 240.00378 * 4 2 1 6 6 C 1.37879 * 120.00118 * 60.00308 * 4 2 1 7 7 N 1.31513 * 119.99745 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00123 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47425 * 59.99936 * 8 6 4 10 10 H 1.48503 * 109.47042 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47320 * 299.99802 * 8 6 4 12 12 N 1.46500 * 109.47033 * 119.99762 * 2 1 3 13 13 C 1.34778 * 120.00142 * 274.99884 * 12 2 1 14 14 O 1.21588 * 119.99723 * 359.97438 * 13 12 2 15 15 N 1.34782 * 120.00100 * 179.97438 * 13 12 2 16 16 C 1.39935 * 119.99751 * 184.60804 * 15 13 12 17 17 C 1.38937 * 119.94957 * 144.88800 * 16 15 13 18 18 C 1.37907 * 120.05120 * 179.97438 * 17 16 15 19 19 C 1.39355 * 119.94884 * 359.97169 * 18 17 16 20 20 C 1.48421 * 120.04908 * 180.02562 * 19 18 17 21 21 C 1.36464 * 123.95206 * 180.02562 * 20 19 18 22 22 S 1.72102 * 104.12976 * 180.28741 * 21 20 19 23 23 N 1.56455 * 96.04059 * 359.62836 * 22 21 20 24 24 N 1.27504 * 109.53124 * 0.38672 * 23 22 21 25 25 C 1.39358 * 119.90010 * 0.27851 * 19 18 17 26 26 C 1.37907 * 119.94985 * 359.46993 * 25 19 18 27 27 H 1.09005 * 109.47409 * 300.00467 * 1 2 3 28 28 H 1.09002 * 109.46774 * 59.99929 * 1 2 3 29 29 H 1.09003 * 109.47352 * 179.97438 * 1 2 3 30 30 H 0.96998 * 120.00142 * 179.97438 * 7 6 4 31 31 H 0.97006 * 120.00149 * 94.99992 * 12 2 1 32 32 H 0.96998 * 119.99487 * 4.60466 * 15 13 12 33 33 H 1.07999 * 119.97951 * 359.97100 * 17 16 15 34 34 H 1.08005 * 120.02517 * 179.97438 * 18 17 16 35 35 H 1.07996 * 127.93232 * 0.02562 * 21 20 19 36 36 H 1.08001 * 120.02306 * 179.72227 * 25 19 18 37 37 H 1.07999 * 119.97581 * 180.25389 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3214 -1.1205 -4.0078 9 1 1.8258 -2.5203 -4.0076 10 1 1.8270 -0.4201 -5.2204 11 1 3.8064 -1.1212 -4.0081 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8583 1.1617 2.4116 15 7 2.5958 -0.6536 3.4578 16 6 2.6383 0.0177 4.6848 17 6 2.3769 -0.6719 5.8623 18 6 2.4187 -0.0125 7.0727 19 6 2.7240 1.3466 7.1144 20 6 2.7702 2.0584 8.4159 21 6 3.0596 3.3853 8.5491 22 16 2.9811 3.6643 10.2455 23 7 2.6058 2.1966 10.6365 24 7 2.5359 1.4798 9.5844 25 6 2.9807 2.0375 5.9317 26 6 2.9429 1.3728 4.7239 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 0.7088 1.1611 -3.4844 31 1 2.2490 -1.6318 1.1527 32 1 2.8892 -1.5763 3.3993 33 1 2.1407 -1.7253 5.8297 34 1 2.2150 -0.5489 7.9878 35 1 3.2896 4.0962 7.7693 36 1 3.2131 3.0918 5.9612 37 1 3.1458 1.9069 3.8075 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360094715.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:48 Heat of formation + Delta-G solvation = 48.678644 kcal Electronic energy + Delta-G solvation = -22599.521963 eV Core-core repulsion = 19082.666629 eV Total energy + Delta-G solvation = -3516.855334 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.00003 -41.48799 -39.61443 -36.95331 -35.85678 -34.40782 -33.42895 -31.99911 -31.01170 -29.39299 -27.94712 -27.31900 -24.69551 -23.83704 -22.97531 -21.84875 -21.55375 -19.97810 -19.51025 -18.77299 -17.88244 -17.32154 -16.83365 -16.71896 -16.49084 -16.15048 -15.95222 -15.51511 -15.06988 -14.75554 -14.43221 -14.28865 -14.02644 -13.76107 -13.65685 -13.04217 -12.97879 -12.87842 -12.79110 -12.72247 -12.26896 -12.24123 -12.14309 -11.78942 -11.18186 -11.10699 -11.07410 -10.84251 -10.66936 -10.58305 -9.92127 -9.81217 -8.86424 -8.16320 -6.33483 -0.80759 -0.02790 0.17670 0.45015 0.70455 1.39374 1.46984 1.48691 1.56335 1.76795 2.20623 2.43334 2.90420 2.91242 3.14299 3.43481 3.68635 3.99882 4.01298 4.05254 4.34126 4.47747 4.58029 4.64460 4.75949 4.94249 5.06921 5.11254 5.24216 5.31735 5.43260 5.48596 5.52616 5.61083 5.68087 5.86067 6.01783 6.10474 6.26355 6.73002 6.73969 7.22802 7.35099 7.67138 8.89837 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.041116 B = 0.002122 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.832703 B =13192.620176 C =13505.980364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.289 3.711 3 H 0.002 0.998 4 C -0.546 4.546 5 H 0.075 0.925 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.973 3.027 9 H -0.264 1.264 10 H -0.288 1.288 11 H -0.271 1.271 12 N -0.714 5.714 13 C 0.693 3.307 14 O -0.621 6.621 15 N -0.676 5.676 16 C 0.172 3.828 17 C -0.144 4.144 18 C -0.068 4.068 19 C -0.054 4.054 20 C 0.059 3.941 21 C -0.289 4.289 22 S 0.511 5.489 23 N -0.334 5.334 24 N -0.263 5.263 25 C -0.071 4.071 26 C -0.143 4.143 27 H 0.011 0.989 28 H 0.067 0.933 29 H 0.039 0.961 30 H 0.266 0.734 31 H 0.404 0.596 32 H 0.423 0.577 33 H 0.156 0.844 34 H 0.144 0.856 35 H 0.228 0.772 36 H 0.151 0.849 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.244 1.661 22.541 23.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.185 3.815 3 H 0.020 0.980 4 C -0.584 4.584 5 H 0.093 0.907 6 C -0.186 4.186 7 N -0.555 5.555 8 Si 0.798 3.202 9 H -0.189 1.189 10 H -0.213 1.213 11 H -0.196 1.196 12 N -0.366 5.366 13 C 0.393 3.607 14 O -0.502 6.502 15 N -0.325 5.325 16 C 0.075 3.925 17 C -0.164 4.164 18 C -0.088 4.088 19 C -0.058 4.058 20 C -0.085 4.085 21 C -0.445 4.445 22 S 0.646 5.354 23 N -0.313 5.313 24 N -0.130 5.130 25 C -0.091 4.091 26 C -0.164 4.164 27 H 0.030 0.970 28 H 0.086 0.914 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.239 0.761 32 H 0.261 0.739 33 H 0.174 0.826 34 H 0.161 0.839 35 H 0.245 0.755 36 H 0.169 0.831 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.663 2.637 24.297 25.087 hybrid contribution 0.337 -1.126 -2.737 2.978 sum 5.999 1.511 21.560 22.430 Atomic orbital electron populations 1.21929 0.98469 0.99420 0.99548 1.18251 0.90828 0.91768 0.80604 0.98024 1.21496 1.32674 1.13653 0.90623 0.90735 1.25788 0.94903 0.95612 1.02285 1.70043 1.36859 1.23879 1.24694 0.85383 0.78614 0.78666 0.77570 1.18919 1.21318 1.19596 1.45464 1.68722 1.14019 1.08392 1.16248 0.78372 0.85014 0.81066 1.90850 1.58610 1.16010 1.84705 1.42528 1.67355 1.17060 1.05587 1.17922 0.97278 0.92586 0.84687 1.21025 1.03520 1.01867 0.90010 1.21156 0.96457 0.93160 0.98017 1.17756 1.06039 0.93662 0.88369 1.20856 1.02793 0.91746 0.93096 1.28754 1.08943 1.00052 1.06701 1.81072 1.45902 1.14047 0.94411 1.78473 1.23379 1.05874 1.23546 1.71368 1.16884 1.29959 0.94757 1.21117 0.97625 1.00643 0.89720 1.21252 1.01906 0.94462 0.98751 0.97015 0.91395 0.94159 0.92528 0.76074 0.73870 0.82635 0.83866 0.75513 0.83144 0.86045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.75 9.26 71.98 0.67 -6.08 16 2 C 0.29 14.66 2.56 44.24 0.11 14.77 16 3 H 0.00 0.11 7.58 -2.39 -0.02 0.09 16 4 C -0.55 -28.13 8.73 25.60 0.22 -27.91 16 5 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 6 C 0.01 0.75 5.30 84.66 0.45 1.20 16 7 N -0.92 -51.72 11.32 21.45 0.24 -51.48 16 8 Si 0.97 41.12 29.54 68.60 2.03 43.14 16 9 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 10 H -0.29 -12.14 7.11 99.48 0.71 -11.44 16 11 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 12 N -0.71 -28.56 5.07 -461.41 -2.34 -30.90 16 13 C 0.69 27.16 8.37 179.05 1.50 28.66 16 14 O -0.62 -29.71 13.43 -3.99 -0.05 -29.77 16 15 N -0.68 -19.19 5.34 -317.06 -1.69 -20.88 16 16 C 0.17 4.77 6.30 38.18 0.24 5.01 16 17 C -0.14 -3.16 9.95 22.36 0.22 -2.94 16 18 C -0.07 -1.52 9.65 22.46 0.22 -1.30 16 19 C -0.05 -1.23 5.88 -20.03 -0.12 -1.34 16 20 C 0.06 1.23 6.76 41.35 0.28 1.51 16 21 C -0.29 -3.98 10.75 67.41 0.72 -3.25 16 22 S 0.51 6.12 23.39 -56.49 -1.32 4.80 16 23 N -0.33 -7.09 12.52 37.02 0.46 -6.63 16 24 N -0.26 -6.32 11.16 -51.26 -0.57 -6.89 16 25 C -0.07 -1.67 9.51 22.46 0.21 -1.45 16 26 C -0.14 -4.26 8.68 22.36 0.19 -4.06 16 27 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 28 H 0.07 3.73 6.07 -2.39 -0.01 3.71 16 29 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 31 H 0.40 13.20 8.56 -92.70 -0.79 12.41 16 32 H 0.42 8.55 8.84 -92.71 -0.82 7.73 16 33 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 34 H 0.14 2.91 7.74 -2.91 -0.02 2.89 16 35 H 0.23 1.62 7.16 -2.91 -0.02 1.59 16 36 H 0.15 2.59 6.83 -2.91 -0.02 2.57 16 37 H 0.12 4.34 6.21 -2.91 -0.02 4.32 16 Total: -1.00 -71.65 334.16 1.22 -70.43 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: -0.46 Total: 25.37 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 4.93 Total: 2.80 kcal Atomic # 7 Polarization: -112.87 SS G_CDS: -3.90 Total: -116.77 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -0.05 Total: -29.77 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.14 kcal Atomic # 16 Polarization: 6.12 SS G_CDS: -1.32 Total: 4.80 kcal Total: -71.65 1.22 -70.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360094715.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.109 kcal (2) G-P(sol) polarization free energy of solvation -71.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds