Wall clock time and date at job start Tue Mar 31 2020 11:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46903 * 2 1 4 4 N 1.46500 * 109.46604 * 180.02562 * 3 2 1 5 5 C 1.36702 * 120.00335 * 264.53023 * 4 3 2 6 6 H 1.07996 * 120.00357 * 131.52094 * 5 4 3 7 7 C 1.39168 * 119.99778 * 311.52598 * 5 4 3 8 8 N 1.31286 * 119.99992 * 3.47835 * 7 5 4 9 9 Si 1.86801 * 119.99982 * 183.48278 * 7 5 4 10 10 H 1.48503 * 109.47118 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47070 * 119.99561 * 9 7 5 12 12 H 1.48500 * 109.47178 * 239.99655 * 9 7 5 13 13 C 1.34778 * 120.00102 * 84.53815 * 4 3 2 14 14 O 1.21565 * 120.00148 * 4.49281 * 13 4 3 15 15 C 1.48014 * 120.00166 * 184.50367 * 13 4 3 16 16 N 1.32024 * 119.26257 * 354.34993 * 15 13 4 17 17 C 1.33242 * 121.30477 * 180.02562 * 16 15 13 18 18 C 1.40838 * 120.96154 * 179.97438 * 17 16 15 19 19 C 1.35992 * 119.74042 * 180.02562 * 18 17 16 20 20 C 1.39431 * 121.08776 * 359.97438 * 19 18 17 21 21 C 1.36144 * 120.92087 * 0.06380 * 20 19 18 22 22 C 1.40422 * 119.65193 * 359.91376 * 21 20 19 23 23 C 1.40723 * 121.25541 * 180.02562 * 22 21 20 24 24 C 1.36622 * 118.25640 * 180.29536 * 23 22 21 25 25 Cl 1.73600 * 120.10601 * 179.72306 * 24 23 22 26 26 H 1.09005 * 109.47258 * 300.00123 * 1 2 3 27 27 H 1.09002 * 109.47435 * 59.99582 * 1 2 3 28 28 H 1.08994 * 109.47212 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46834 * 240.00510 * 2 1 3 30 30 H 1.08995 * 109.46799 * 119.99864 * 2 1 3 31 31 H 1.08994 * 109.47202 * 60.00608 * 3 2 1 32 32 H 1.08995 * 109.47282 * 299.99568 * 3 2 1 33 33 H 0.97007 * 119.99889 * 180.02562 * 8 7 5 34 34 H 1.07999 * 120.12493 * 0.04154 * 18 17 16 35 35 H 1.08007 * 119.45655 * 179.97438 * 19 18 17 36 36 H 1.08003 * 119.53893 * 179.97438 * 20 19 18 37 37 H 1.07991 * 120.17567 * 179.97438 * 21 20 19 38 38 H 1.07992 * 120.87067 * 0.02650 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1890 1.5551 1.1776 6 1 4.9960 0.8730 1.4008 7 6 3.8454 2.5487 2.0894 8 7 2.8211 3.3341 1.8494 9 14 4.8417 2.7650 3.6547 10 1 5.9356 1.7612 3.6878 11 1 5.4221 4.1315 3.6872 12 1 3.9592 2.5738 4.8336 13 6 4.1783 1.3315 -1.1628 14 8 3.5729 1.3137 -2.2168 15 6 5.6551 1.2310 -1.1559 16 7 6.3056 1.3642 -0.0148 17 6 7.6344 1.2817 0.0383 18 6 8.3211 1.4254 1.2595 19 6 9.6779 1.3371 1.2850 20 6 10.4063 1.1052 0.1190 21 6 9.7791 0.9616 -1.0808 22 6 8.3789 1.0459 -1.1472 23 6 7.6960 0.9020 -2.3692 24 6 6.3334 1.0012 -2.3641 25 17 5.4429 0.8387 -3.8455 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8932 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 2.5819 4.0270 2.4849 34 1 7.7722 1.6048 2.1722 35 1 10.1998 1.4485 2.2240 36 1 11.4832 1.0401 0.1680 37 1 10.3551 0.7827 -1.9765 38 1 8.2351 0.7223 -3.2875 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361607723.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:48 Heat of formation + Delta-G solvation = 20.341225 kcal Electronic energy + Delta-G solvation = -24431.593166 eV Core-core repulsion = 20879.172572 eV Total energy + Delta-G solvation = -3552.420594 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.93504 -40.29263 -38.09902 -37.20658 -36.88754 -34.65946 -34.31480 -33.08093 -31.45379 -30.83819 -27.75494 -26.88882 -25.41687 -24.43319 -23.07693 -22.55647 -21.29622 -19.80427 -18.92568 -18.54643 -17.56579 -16.81403 -16.49040 -16.09079 -16.01947 -15.75962 -15.48866 -15.24433 -15.05081 -14.83044 -14.41053 -14.17459 -14.02355 -13.45057 -13.22413 -13.11764 -12.98468 -12.73660 -12.59669 -12.56051 -12.40283 -12.34304 -12.13717 -11.92249 -11.90262 -11.49663 -11.24157 -10.97415 -10.57906 -9.93871 -9.67526 -9.20502 -9.18966 -8.18758 -5.99337 -0.72666 -0.41129 0.97650 1.14490 1.38361 1.43093 1.55937 1.59794 2.30970 2.46561 2.73295 3.08943 3.16565 3.43222 3.61352 3.74876 3.92550 3.95282 4.19214 4.26006 4.32245 4.34733 4.45256 4.56707 4.72130 4.74839 4.82326 4.96098 4.99004 5.10016 5.10482 5.25387 5.37822 5.40364 5.43670 5.50246 5.56241 5.73712 5.91546 6.14878 6.57905 6.84907 7.19004 7.54855 7.99189 8.80651 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.010707 B = 0.006838 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.397897 B = 4093.725035 C = 6316.469083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.123 4.123 3 C 0.113 3.887 4 N -0.425 5.425 5 C -0.298 4.298 6 H 0.108 0.892 7 C -0.004 4.004 8 N -0.906 5.906 9 Si 0.976 3.024 10 H -0.248 1.248 11 H -0.285 1.285 12 H -0.278 1.278 13 C 0.488 3.512 14 O -0.599 6.599 15 C 0.112 3.888 16 N -0.410 5.410 17 C 0.084 3.916 18 C -0.114 4.114 19 C -0.089 4.089 20 C -0.101 4.101 21 C -0.094 4.094 22 C -0.099 4.099 23 C -0.053 4.053 24 C -0.071 4.071 25 Cl -0.036 7.036 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.038 0.962 30 H 0.053 0.947 31 H 0.102 0.898 32 H 0.032 0.968 33 H 0.268 0.732 34 H 0.122 0.878 35 H 0.162 0.838 36 H 0.172 0.828 37 H 0.169 0.831 38 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.790 -5.398 -1.735 15.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.162 4.162 3 C -0.010 4.010 4 N -0.142 5.142 5 C -0.428 4.428 6 H 0.126 0.874 7 C -0.205 4.205 8 N -0.545 5.545 9 Si 0.800 3.200 10 H -0.171 1.171 11 H -0.211 1.211 12 H -0.204 1.204 13 C 0.277 3.723 14 O -0.485 6.485 15 C -0.042 4.042 16 N -0.121 5.121 17 C -0.040 4.040 18 C -0.133 4.133 19 C -0.109 4.109 20 C -0.119 4.119 21 C -0.113 4.113 22 C -0.101 4.101 23 C -0.079 4.079 24 C -0.101 4.101 25 Cl -0.007 7.007 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.120 0.880 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.140 0.860 35 H 0.180 0.820 36 H 0.190 0.810 37 H 0.186 0.814 38 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 13.851 -5.115 -1.443 14.835 hybrid contribution -0.056 0.414 -0.143 0.442 sum 13.795 -4.701 -1.587 14.660 Atomic orbital electron populations 1.21585 0.93400 1.02296 1.01807 1.21726 0.97467 0.96756 1.00226 1.21610 0.80922 0.96214 1.02232 1.43658 1.05513 1.59610 1.05386 1.20098 1.14805 1.14061 0.93788 0.87448 1.26351 0.96903 0.94507 1.02698 1.69807 1.26876 1.19955 1.37889 0.85123 0.79137 0.78344 0.77368 1.17111 1.21065 1.20423 1.18588 0.86300 0.82925 0.84477 1.90667 1.69191 1.57702 1.30930 1.21310 0.95252 0.98891 0.88712 1.69197 1.08209 1.09359 1.25334 1.19855 0.89551 0.99325 0.95220 1.21052 0.95676 1.00970 0.95626 1.21350 0.92294 0.96329 1.00901 1.21447 1.02235 0.96997 0.91203 1.21362 0.90498 0.98654 1.00739 1.19192 0.96711 1.01886 0.92358 1.21658 0.90541 0.96026 0.99668 1.21714 0.93930 1.05754 0.88746 1.98363 1.76057 1.95680 1.30554 0.92441 0.92911 0.90930 0.94309 0.92826 0.88039 0.94986 0.92185 0.85954 0.82045 0.81036 0.81391 0.79618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 9.91 71.98 0.71 -3.83 16 2 C -0.12 -5.30 6.22 30.59 0.19 -5.11 16 3 C 0.11 5.79 4.88 86.38 0.42 6.21 16 4 N -0.43 -23.15 2.50 -638.68 -1.60 -24.74 16 5 C -0.30 -15.98 7.42 84.16 0.62 -15.36 16 6 H 0.11 5.73 6.01 -2.91 -0.02 5.71 16 7 C 0.00 -0.20 5.35 85.00 0.45 0.25 16 8 N -0.91 -50.23 11.01 21.70 0.24 -49.99 16 9 Si 0.98 41.49 29.56 68.60 2.03 43.52 16 10 H -0.25 -9.74 7.05 99.48 0.70 -9.03 16 11 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 12 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 13 C 0.49 26.23 7.56 86.84 0.66 26.89 16 14 O -0.60 -33.12 13.53 -3.92 -0.05 -33.17 16 15 C 0.11 5.28 6.67 42.25 0.28 5.56 16 16 N -0.41 -18.65 6.29 -177.75 -1.12 -19.76 16 17 C 0.08 3.07 6.61 40.49 0.27 3.34 16 18 C -0.11 -3.50 9.99 22.38 0.22 -3.28 16 19 C -0.09 -1.80 9.94 22.04 0.22 -1.58 16 20 C -0.10 -1.59 9.96 22.07 0.22 -1.37 16 21 C -0.09 -1.77 9.77 22.31 0.22 -1.55 16 22 C -0.10 -2.88 5.75 -21.22 -0.12 -3.00 16 23 C -0.05 -1.56 9.65 22.50 0.22 -1.35 16 24 C -0.07 -2.79 6.32 22.43 0.14 -2.65 16 25 Cl -0.04 -1.37 25.93 -2.72 -0.07 -1.44 16 26 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 27 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.10 5.49 5.55 -2.39 -0.01 5.48 16 32 H 0.03 1.72 7.53 -2.39 -0.02 1.70 16 33 H 0.27 14.05 8.31 -92.70 -0.77 13.28 16 34 H 0.12 4.01 8.01 -2.91 -0.02 3.98 16 35 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 36 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 37 H 0.17 1.83 8.06 -2.92 -0.02 1.80 16 38 H 0.19 3.75 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -70.25 334.41 5.24 -65.01 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 1.08 Total: 17.40 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 4.73 Total: 3.18 kcal Atomic # 7 Polarization: -92.02 SS G_CDS: -2.48 Total: -94.50 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -0.05 Total: -33.17 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.07 Total: -1.44 kcal Total: -70.25 5.24 -65.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361607723.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.353 kcal (2) G-P(sol) polarization free energy of solvation -70.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds