Wall clock time and date at job start Tue Mar 31 2020 12:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40062 * 125.98261 * 2 1 4 4 C 1.31632 * 108.30626 * 180.14824 * 3 2 1 5 5 C 1.48371 * 125.92665 * 179.90703 * 4 3 2 6 6 C 1.39772 * 120.90698 * 179.41228 * 5 4 3 7 7 C 1.37960 * 119.02265 * 180.25348 * 6 5 4 8 8 N 1.31937 * 120.88011 * 0.02562 * 7 6 5 9 9 C 1.31932 * 122.00532 * 0.02562 * 8 7 6 10 10 C 1.37961 * 120.87984 * 359.97340 * 9 8 7 11 11 C 1.40753 * 108.14983 * 359.64331 * 4 3 2 12 12 C 1.35869 * 107.79616 * 0.22809 * 11 4 3 13 13 N 1.39483 * 126.14962 * 180.02562 * 12 11 4 14 14 C 1.34786 * 119.99720 * 0.02562 * 13 12 11 15 15 O 1.21294 * 119.99599 * 359.97438 * 14 13 12 16 16 C 1.50692 * 119.99972 * 180.02562 * 14 13 12 17 17 S 1.81001 * 109.47101 * 179.97438 * 16 14 13 18 18 C 1.76199 * 99.99944 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00167 * 359.97438 * 18 17 16 20 20 C 1.38803 * 120.00021 * 180.02562 * 18 17 16 21 21 N 1.31634 * 119.99694 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00313 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47032 * 89.99762 * 22 20 18 24 24 H 1.48494 * 109.47147 * 210.00068 * 22 20 18 25 25 H 1.48499 * 109.47020 * 329.99692 * 22 20 18 26 26 H 1.09003 * 109.46774 * 270.24831 * 1 2 3 27 27 H 1.08993 * 109.47385 * 30.25127 * 1 2 3 28 28 H 1.09001 * 109.46754 * 150.25740 * 1 2 3 29 29 H 1.07999 * 120.48575 * 0.24428 * 6 5 4 30 30 H 1.07998 * 119.56071 * 180.02562 * 7 6 5 31 31 H 1.08000 * 119.56026 * 179.97438 * 9 8 7 32 32 H 1.07996 * 120.49288 * 180.02562 * 10 9 8 33 33 H 1.08006 * 126.10129 * 180.18968 * 11 4 3 34 34 H 0.96997 * 120.00558 * 180.02562 * 13 12 11 35 35 H 1.09003 * 109.47240 * 299.99774 * 16 14 13 36 36 H 1.09002 * 109.47630 * 59.99483 * 16 14 13 37 37 H 0.97001 * 119.99846 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2879 1.1334 0.0000 4 6 3.5421 0.7337 -0.0032 5 6 4.7363 1.6141 -0.0063 6 6 6.0258 1.0748 0.0026 7 6 7.1088 1.9296 0.0047 8 7 6.9388 3.2379 -0.0012 9 6 5.7392 3.7872 -0.0087 10 6 4.6025 3.0054 -0.0113 11 6 3.5537 -0.6738 0.0029 12 6 2.2635 -1.0997 0.0048 13 7 1.8353 -2.4272 0.0111 14 6 2.7394 -3.4269 0.0166 15 8 3.9252 -3.1720 0.0155 16 6 2.2768 -4.8610 0.0228 17 16 3.7157 -5.9590 0.0284 18 6 2.9062 -7.5241 0.0359 19 1 1.8274 -7.5741 0.0363 20 6 3.6551 -8.6927 0.0422 21 7 4.9700 -8.6318 0.0422 22 14 2.7971 -10.3520 0.0494 23 1 2.5710 -10.7984 -1.3488 24 1 3.6460 -11.3452 0.7550 25 1 1.4921 -10.2313 0.7477 26 1 -0.3633 0.0045 1.0277 27 1 -0.3634 0.8876 -0.5177 28 1 -0.3633 -0.8923 -0.5098 29 1 6.1722 0.0048 0.0080 30 1 8.1090 1.5223 0.0112 31 1 5.6459 4.8631 -0.0129 32 1 3.6237 3.4616 -0.0179 33 1 4.4316 -1.3029 0.0051 34 1 0.8870 -2.6309 0.0116 35 1 1.6754 -5.0450 0.9132 36 1 1.6769 -5.0533 -0.8668 37 1 5.4934 -9.4485 0.0463 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361825671.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:54 Heat of formation + Delta-G solvation = 87.346600 kcal Electronic energy + Delta-G solvation = -22424.007514 eV Core-core repulsion = 18908.828949 eV Total energy + Delta-G solvation = -3515.178565 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.63236 -40.04409 -39.25829 -35.17776 -33.93887 -32.53568 -31.94974 -31.41922 -30.42250 -28.23790 -26.99493 -25.59932 -23.97094 -23.54910 -22.05902 -20.61641 -19.91738 -18.52684 -17.67722 -16.64812 -16.34382 -16.11036 -16.08465 -15.76753 -15.05791 -15.03429 -14.89597 -14.29057 -14.05256 -13.94550 -13.70334 -13.47631 -13.24015 -13.12913 -12.72911 -12.66282 -12.43578 -11.84740 -11.22463 -11.16439 -11.12321 -10.89415 -10.79420 -10.21552 -9.94818 -9.72257 -9.62163 -9.28125 -9.16806 -8.68993 -8.41261 -8.20568 -6.64573 -6.32424 -4.04966 0.68983 1.04106 1.72063 1.89748 2.68978 2.76423 3.01680 3.15716 3.17754 3.23510 3.40086 3.83387 4.05279 4.08617 4.34740 4.40559 4.64507 4.74172 4.82149 4.95156 5.03356 5.03436 5.05825 5.29881 5.35167 5.48154 5.50403 5.59444 5.62317 5.70454 5.83340 5.91842 6.04553 6.14171 6.53633 6.58487 6.84206 7.14375 7.49226 7.55860 7.83994 8.13029 8.24187 9.13129 10.74927 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.019554 B = 0.002619 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.612204 B =10687.205976 C =12098.366127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.389 5.389 3 N -0.277 5.277 4 C 0.114 3.886 5 C 0.037 3.963 6 C -0.145 4.145 7 C 0.099 3.901 8 N -0.487 5.487 9 C 0.094 3.906 10 C -0.150 4.150 11 C -0.262 4.262 12 C 0.318 3.682 13 N -0.655 5.655 14 C 0.539 3.461 15 O -0.478 6.478 16 C -0.151 4.151 17 S -0.051 6.051 18 C -0.539 4.539 19 H 0.074 0.926 20 C 0.075 3.925 21 N -0.866 5.866 22 Si 0.920 3.080 23 H -0.276 1.276 24 H -0.281 1.281 25 H -0.272 1.272 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.146 0.854 30 H 0.161 0.839 31 H 0.156 0.844 32 H 0.139 0.861 33 H 0.181 0.819 34 H 0.410 0.590 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.859 19.469 -0.161 20.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.178 5.178 3 N -0.101 5.101 4 C -0.050 4.050 5 C 0.027 3.973 6 C -0.166 4.166 7 C -0.057 4.057 8 N -0.196 5.196 9 C -0.062 4.062 10 C -0.171 4.171 11 C -0.293 4.293 12 C 0.099 3.901 13 N -0.305 5.305 14 C 0.326 3.674 15 O -0.348 6.348 16 C -0.301 4.301 17 S 0.176 5.824 18 C -0.687 4.687 19 H 0.092 0.908 20 C -0.135 4.135 21 N -0.501 5.501 22 Si 0.746 3.254 23 H -0.202 1.202 24 H -0.207 1.207 25 H -0.197 1.197 26 H 0.094 0.906 27 H 0.112 0.888 28 H 0.102 0.898 29 H 0.164 0.836 30 H 0.178 0.822 31 H 0.174 0.826 32 H 0.157 0.843 33 H 0.198 0.802 34 H 0.245 0.755 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.934 21.200 -0.156 22.016 hybrid contribution -3.006 -2.798 0.005 4.107 sum -8.940 18.402 -0.151 20.459 Atomic orbital electron populations 1.21843 0.74206 1.04586 1.03507 1.48559 1.06217 1.02028 1.60996 1.77525 1.00698 1.05117 1.26757 1.20351 0.91064 0.92713 1.00866 1.18145 0.90426 0.91875 0.96836 1.22302 0.91883 1.02512 0.99929 1.22721 0.99231 0.88479 0.95286 1.67637 1.26386 1.13834 1.11771 1.22661 0.87282 1.00421 0.95878 1.22219 1.00920 0.93171 1.00807 1.21669 0.96442 0.93328 1.17866 1.18098 0.90533 0.80596 1.00830 1.43207 1.11322 1.01644 1.74312 1.20560 0.85704 0.86275 0.74899 1.90652 1.16257 1.83269 1.44617 1.23529 1.07931 0.93060 1.05599 1.85466 1.02875 0.97313 1.96779 1.22838 0.95077 0.91261 1.59548 0.90764 1.25000 0.94902 0.99259 0.94341 1.70003 1.04527 1.29123 1.46410 0.86143 0.79180 0.81632 0.78413 1.20199 1.20673 1.19673 0.90572 0.88764 0.89841 0.83645 0.82206 0.82642 0.84335 0.80246 0.75474 0.88503 0.88509 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.68 11.29 59.85 0.68 1.35 16 2 N -0.39 -4.66 4.04 -67.07 -0.27 -4.93 16 3 N -0.28 -3.80 12.31 33.40 0.41 -3.39 16 4 C 0.11 1.62 7.00 -82.83 -0.58 1.04 16 5 C 0.04 0.47 5.91 -104.58 -0.62 -0.15 16 6 C -0.14 -1.70 9.66 -39.11 -0.38 -2.08 16 7 C 0.10 1.08 11.17 -17.61 -0.20 0.88 16 8 N -0.49 -5.73 10.35 -13.35 -0.14 -5.87 16 9 C 0.09 0.96 11.17 -17.61 -0.20 0.77 16 10 C -0.15 -1.64 9.78 -39.11 -0.38 -2.02 16 11 C -0.26 -4.05 9.06 -39.48 -0.36 -4.40 16 12 C 0.32 4.42 7.67 -152.65 -1.17 3.25 16 13 N -0.66 -8.22 5.42 -11.37 -0.06 -8.28 16 14 C 0.54 8.98 7.81 -10.99 -0.09 8.90 16 15 O -0.48 -9.62 12.98 5.55 0.07 -9.55 16 16 C -0.15 -2.67 6.16 36.00 0.22 -2.45 16 17 S -0.05 -1.27 20.57 -107.50 -2.21 -3.49 16 18 C -0.54 -14.49 9.50 30.94 0.29 -14.20 16 19 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 20 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 21 N -0.87 -25.09 13.22 55.49 0.73 -24.36 16 22 Si 0.92 20.53 29.55 -169.99 -5.02 15.50 16 23 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 26 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.38 7.50 -51.93 -0.39 -0.01 16 29 H 0.15 1.63 7.17 -52.49 -0.38 1.25 16 30 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 31 H 0.16 1.12 8.06 -52.49 -0.42 0.69 16 32 H 0.14 1.35 7.94 -52.49 -0.42 0.93 16 33 H 0.18 3.03 5.17 -52.48 -0.27 2.76 16 34 H 0.41 3.48 7.97 -40.82 -0.33 3.16 16 35 H 0.10 1.55 8.14 -51.92 -0.42 1.12 16 36 H 0.10 1.54 8.14 -51.91 -0.42 1.12 16 37 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 341.98 15.07 5.15 5.15 Total: -1.00 -34.81 341.98 -8.07 -42.87 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -3.86 Total: 3.50 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -2.87 Total: -7.17 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: 0.67 Total: -46.84 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.07 Total: -9.55 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: -1.27 SS G_CDS: -2.21 Total: -3.49 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.81 -8.07 -42.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361825671.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.221 kcal (2) G-P(sol) polarization free energy of solvation -34.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds