Wall clock time and date at job start Tue Mar 31 2020 12:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40062 * 125.98261 * 2 1 4 4 C 1.31632 * 108.30626 * 180.14824 * 3 2 1 5 5 C 1.48371 * 125.92665 * 179.90703 * 4 3 2 6 6 C 1.39772 * 120.90698 * 179.41228 * 5 4 3 7 7 C 1.37960 * 119.02265 * 180.25348 * 6 5 4 8 8 N 1.31937 * 120.88011 * 0.02562 * 7 6 5 9 9 C 1.31932 * 122.00532 * 0.02562 * 8 7 6 10 10 C 1.37961 * 120.87984 * 359.97340 * 9 8 7 11 11 C 1.40753 * 108.14983 * 359.64331 * 4 3 2 12 12 C 1.35869 * 107.79616 * 0.22809 * 11 4 3 13 13 N 1.39483 * 126.14962 * 180.02562 * 12 11 4 14 14 C 1.34786 * 119.99720 * 0.02562 * 13 12 11 15 15 O 1.21294 * 119.99599 * 359.97438 * 14 13 12 16 16 C 1.50692 * 119.99972 * 180.02562 * 14 13 12 17 17 S 1.81001 * 109.47101 * 179.97438 * 16 14 13 18 18 C 1.76199 * 99.99944 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00167 * 359.97438 * 18 17 16 20 20 C 1.38803 * 120.00021 * 180.02562 * 18 17 16 21 21 N 1.31634 * 119.99694 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00313 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47032 * 89.99762 * 22 20 18 24 24 H 1.48494 * 109.47147 * 210.00068 * 22 20 18 25 25 H 1.48499 * 109.47020 * 329.99692 * 22 20 18 26 26 H 1.09003 * 109.46774 * 270.24831 * 1 2 3 27 27 H 1.08993 * 109.47385 * 30.25127 * 1 2 3 28 28 H 1.09001 * 109.46754 * 150.25740 * 1 2 3 29 29 H 1.07999 * 120.48575 * 0.24428 * 6 5 4 30 30 H 1.07998 * 119.56071 * 180.02562 * 7 6 5 31 31 H 1.08000 * 119.56026 * 179.97438 * 9 8 7 32 32 H 1.07996 * 120.49288 * 180.02562 * 10 9 8 33 33 H 1.08006 * 126.10129 * 180.18968 * 11 4 3 34 34 H 0.96997 * 120.00558 * 180.02562 * 13 12 11 35 35 H 1.09003 * 109.47240 * 299.99774 * 16 14 13 36 36 H 1.09002 * 109.47630 * 59.99483 * 16 14 13 37 37 H 0.97001 * 119.99846 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2879 1.1334 0.0000 4 6 3.5421 0.7337 -0.0032 5 6 4.7363 1.6141 -0.0063 6 6 6.0258 1.0748 0.0026 7 6 7.1088 1.9296 0.0047 8 7 6.9388 3.2379 -0.0012 9 6 5.7392 3.7872 -0.0087 10 6 4.6025 3.0054 -0.0113 11 6 3.5537 -0.6738 0.0029 12 6 2.2635 -1.0997 0.0048 13 7 1.8353 -2.4272 0.0111 14 6 2.7394 -3.4269 0.0166 15 8 3.9252 -3.1720 0.0155 16 6 2.2768 -4.8610 0.0228 17 16 3.7157 -5.9590 0.0284 18 6 2.9062 -7.5241 0.0359 19 1 1.8274 -7.5741 0.0363 20 6 3.6551 -8.6927 0.0422 21 7 4.9700 -8.6318 0.0422 22 14 2.7971 -10.3520 0.0494 23 1 2.5710 -10.7984 -1.3488 24 1 3.6460 -11.3452 0.7550 25 1 1.4921 -10.2313 0.7477 26 1 -0.3633 0.0045 1.0277 27 1 -0.3634 0.8876 -0.5177 28 1 -0.3633 -0.8923 -0.5098 29 1 6.1722 0.0048 0.0080 30 1 8.1090 1.5223 0.0112 31 1 5.6459 4.8631 -0.0129 32 1 3.6237 3.4616 -0.0179 33 1 4.4316 -1.3029 0.0051 34 1 0.8870 -2.6309 0.0116 35 1 1.6754 -5.0450 0.9132 36 1 1.6769 -5.0533 -0.8668 37 1 5.4934 -9.4485 0.0463 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361825671.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:53 Heat of formation + Delta-G solvation = 64.114969 kcal Electronic energy + Delta-G solvation = -22425.014913 eV Core-core repulsion = 18908.828949 eV Total energy + Delta-G solvation = -3516.185964 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.68742 -40.98870 -40.46629 -36.32743 -34.92014 -34.57498 -32.79104 -32.29146 -31.71489 -29.45558 -27.78420 -27.64583 -24.90040 -24.41509 -23.21356 -21.63530 -21.11683 -19.89332 -19.18239 -17.91376 -17.20861 -17.17007 -17.06267 -16.86946 -16.63978 -16.28254 -16.22882 -15.77919 -15.17452 -14.90605 -14.71621 -14.54534 -14.42434 -14.12654 -14.00014 -13.63980 -13.39971 -13.15970 -12.89453 -12.71617 -12.62209 -12.39197 -11.90350 -11.72288 -11.16654 -11.13322 -11.07432 -10.52124 -10.29178 -10.12128 -9.62941 -9.33372 -8.66467 -8.34541 -6.12241 -0.25331 0.19853 0.59492 0.82487 1.32908 1.43615 1.49996 1.52121 1.58445 1.87874 2.05459 2.26355 2.94871 3.00624 3.11961 3.22089 3.52543 3.58991 3.76928 3.98516 4.08853 4.18339 4.24955 4.35782 4.37849 4.44018 4.46949 4.58152 4.64093 4.66481 4.80829 4.89442 5.04593 5.25498 5.43744 5.50782 5.71807 5.80776 6.11241 6.20619 6.50960 6.90608 6.99058 7.07772 8.74343 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.019554 B = 0.002619 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.612204 B =10687.205976 C =12098.366127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.378 5.378 3 N -0.283 5.283 4 C 0.106 3.894 5 C 0.016 3.984 6 C -0.156 4.156 7 C 0.097 3.903 8 N -0.503 5.503 9 C 0.097 3.903 10 C -0.148 4.148 11 C -0.290 4.290 12 C 0.313 3.687 13 N -0.629 5.629 14 C 0.543 3.457 15 O -0.519 6.519 16 C -0.124 4.124 17 S -0.142 6.142 18 C -0.545 4.545 19 H 0.087 0.913 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.996 3.004 23 H -0.269 1.269 24 H -0.281 1.281 25 H -0.257 1.257 26 H 0.094 0.906 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.140 0.860 30 H 0.182 0.818 31 H 0.189 0.811 32 H 0.151 0.849 33 H 0.158 0.842 34 H 0.432 0.568 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.826 20.194 -0.171 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.167 5.167 3 N -0.107 5.107 4 C -0.057 4.057 5 C 0.006 3.994 6 C -0.177 4.177 7 C -0.058 4.058 8 N -0.213 5.213 9 C -0.059 4.059 10 C -0.169 4.169 11 C -0.321 4.321 12 C 0.093 3.907 13 N -0.280 5.280 14 C 0.330 3.670 15 O -0.392 6.392 16 C -0.275 4.275 17 S 0.085 5.915 18 C -0.693 4.693 19 H 0.105 0.895 20 C -0.191 4.191 21 N -0.547 5.547 22 Si 0.818 3.182 23 H -0.194 1.194 24 H -0.206 1.206 25 H -0.180 1.180 26 H 0.113 0.887 27 H 0.126 0.874 28 H 0.129 0.871 29 H 0.158 0.842 30 H 0.199 0.801 31 H 0.206 0.794 32 H 0.169 0.831 33 H 0.175 0.825 34 H 0.272 0.728 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.976 21.958 -0.166 23.722 hybrid contribution -2.172 -2.859 0.008 3.590 sum -11.147 19.099 -0.158 22.115 Atomic orbital electron populations 1.22371 0.70988 1.06702 1.05383 1.48917 1.07760 1.00695 1.59293 1.77460 1.00592 1.05933 1.26751 1.20504 0.91782 0.92387 1.01027 1.18347 0.90281 0.92770 0.97967 1.22347 0.92199 1.02499 1.00686 1.23049 0.99919 0.88338 0.94530 1.67717 1.27213 1.14034 1.12358 1.23184 0.86507 1.01889 0.94338 1.22365 1.01840 0.92369 1.00376 1.21609 0.96862 0.94045 1.19608 1.17983 0.90590 0.81236 1.00929 1.42689 1.11888 1.00496 1.72964 1.20321 0.85488 0.86575 0.74649 1.90673 1.18158 1.83744 1.46615 1.23318 1.04431 0.91729 1.08036 1.85665 1.08912 0.99778 1.97098 1.23208 0.95672 0.91625 1.58773 0.89460 1.26095 0.95542 1.03650 0.93828 1.70172 1.06406 1.30156 1.47990 0.84980 0.78330 0.76154 0.78707 1.19447 1.20646 1.18039 0.88748 0.87447 0.87083 0.84219 0.80136 0.79434 0.83132 0.82493 0.72790 0.85947 0.85908 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 11.29 127.77 1.44 2.29 16 2 N -0.38 -8.29 4.04 -366.12 -1.48 -9.77 16 3 N -0.28 -7.47 12.31 -48.25 -0.59 -8.07 16 4 C 0.11 3.07 7.00 42.49 0.30 3.36 16 5 C 0.02 0.42 5.91 -19.84 -0.12 0.30 16 6 C -0.16 -3.84 9.66 22.58 0.22 -3.62 16 7 C 0.10 2.13 11.17 84.61 0.95 3.08 16 8 N -0.50 -11.46 10.35 -196.14 -2.03 -13.49 16 9 C 0.10 1.86 11.17 84.61 0.95 2.80 16 10 C -0.15 -3.13 9.78 22.58 0.22 -2.91 16 11 C -0.29 -9.22 9.06 22.33 0.20 -9.02 16 12 C 0.31 8.37 7.67 131.06 1.01 9.37 16 13 N -0.63 -14.57 5.42 -308.26 -1.67 -16.23 16 14 C 0.54 17.74 7.81 87.65 0.68 18.42 16 15 O -0.52 -21.60 12.98 -3.07 -0.04 -21.64 16 16 C -0.12 -4.21 6.16 71.23 0.44 -3.78 16 17 S -0.14 -7.26 20.57 -56.49 -1.16 -8.42 16 18 C -0.54 -29.15 9.50 67.96 0.65 -28.51 16 19 H 0.09 4.26 7.80 -2.91 -0.02 4.24 16 20 C 0.01 0.75 5.49 84.86 0.47 1.22 16 21 N -0.91 -54.02 13.22 21.65 0.29 -53.74 16 22 Si 1.00 41.71 29.55 68.60 2.03 43.73 16 23 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 24 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 25 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 26 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.11 0.51 7.50 -2.39 -0.02 0.50 16 29 H 0.14 3.49 7.17 -2.91 -0.02 3.47 16 30 H 0.18 2.97 8.06 -2.91 -0.02 2.95 16 31 H 0.19 2.21 8.06 -2.91 -0.02 2.19 16 32 H 0.15 2.73 7.94 -2.91 -0.02 2.71 16 33 H 0.16 5.72 5.17 -2.91 -0.02 5.71 16 34 H 0.43 5.80 7.97 -92.71 -0.74 5.07 16 35 H 0.12 3.58 8.14 -2.39 -0.02 3.56 16 36 H 0.12 3.58 8.14 -2.39 -0.02 3.56 16 37 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -78.44 341.98 3.12 -75.32 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 0.39 Total: 19.29 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: 7.39 Total: -6.98 kcal Atomic # 7 Polarization: -95.81 SS G_CDS: -5.49 Total: -101.29 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.04 Total: -21.64 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Atomic # 16 Polarization: -7.26 SS G_CDS: -1.16 Total: -8.42 kcal Total: -78.44 3.12 -75.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361825671.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.430 kcal (2) G-P(sol) polarization free energy of solvation -78.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds