Wall clock time and date at job start Tue Mar 31 2020 12:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40512 * 126.89420 * 2 1 4 4 H 0.97002 * 126.73517 * 0.06642 * 3 2 1 5 5 C 1.36663 * 106.52775 * 180.18860 * 3 2 1 6 6 C 1.47592 * 125.56664 * 179.85059 * 5 3 2 7 7 C 1.39714 * 120.15700 * 359.43697 * 6 5 3 8 8 C 1.37920 * 119.83890 * 180.27654 * 7 6 5 9 9 C 1.38386 * 120.15644 * 359.97438 * 8 7 6 10 10 C 1.38383 * 120.32443 * 0.02562 * 9 8 7 11 11 C 1.37921 * 120.15344 * 359.97438 * 10 9 8 12 12 N 1.31921 * 108.86149 * 359.58304 * 5 3 2 13 13 C 1.33640 * 110.12145 * 0.26866 * 12 5 3 14 14 N 1.33306 * 125.86580 * 179.97438 * 13 12 5 15 15 C 1.32913 * 119.99668 * 0.02562 * 14 13 12 16 16 O 1.21589 * 120.00420 * 0.02562 * 15 14 13 17 17 C 1.50708 * 120.00268 * 180.02562 * 15 14 13 18 18 S 1.80990 * 109.47364 * 180.02562 * 17 15 14 19 19 C 1.76202 * 100.00070 * 180.02562 * 18 17 15 20 20 H 1.07997 * 119.99662 * 359.97438 * 19 18 17 21 21 C 1.38803 * 120.00134 * 180.02562 * 19 18 17 22 22 N 1.31622 * 119.99902 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99810 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47292 * 59.99932 * 23 21 19 25 25 H 1.48505 * 109.47063 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.47354 * 299.99604 * 23 21 19 27 27 H 1.09001 * 109.47234 * 270.25868 * 1 2 3 28 28 H 1.08995 * 109.47168 * 30.26055 * 1 2 3 29 29 H 1.09004 * 109.47286 * 150.26168 * 1 2 3 30 30 H 1.07994 * 120.08241 * 0.25465 * 7 6 5 31 31 H 1.07998 * 119.91832 * 179.97438 * 8 7 6 32 32 H 1.08005 * 119.83874 * 179.97438 * 9 8 7 33 33 H 1.07994 * 119.92463 * 180.02562 * 10 9 8 34 34 H 1.07998 * 120.08422 * 180.02562 * 11 10 9 35 35 H 1.09002 * 109.46661 * 300.00914 * 17 15 14 36 36 H 1.08998 * 109.46467 * 60.00039 * 17 15 14 37 37 H 0.96999 * 120.00334 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3085 1.1237 0.0000 4 1 2.0351 2.0544 0.0009 5 6 3.5897 0.6481 -0.0043 6 6 4.8123 1.4749 -0.0090 7 6 4.7170 2.8687 -0.0212 8 6 5.8638 3.6349 -0.0313 9 6 7.1066 3.0262 -0.0289 10 6 7.2087 1.6462 -0.0169 11 6 6.0705 0.8674 -0.0066 12 7 3.5551 -0.6706 0.0023 13 6 2.2886 -1.0973 0.0050 14 7 1.8934 -2.3704 0.0110 15 6 2.7957 -3.3463 0.0154 16 8 3.9816 -3.0779 0.0144 17 6 2.3490 -4.7856 0.0216 18 16 3.7998 -5.8676 0.0273 19 6 3.0077 -7.4416 0.0332 20 1 1.9295 -7.5034 0.0330 21 6 3.7694 -8.6019 0.0392 22 7 5.0835 -8.5265 0.0400 23 14 2.9296 -10.2704 0.0461 24 1 2.0828 -10.4034 -1.1665 25 1 3.9577 -11.3420 0.0513 26 1 2.0807 -10.3923 1.2586 27 1 -0.3634 0.0046 1.0277 28 1 -0.3633 0.8876 -0.5178 29 1 -0.3634 -0.8923 -0.5098 30 1 3.7478 3.3450 -0.0231 31 1 5.7916 4.7124 -0.0412 32 1 8.0013 3.6311 -0.0373 33 1 8.1818 1.1780 -0.0146 34 1 6.1514 -0.2095 0.0032 35 1 1.7503 -4.9763 0.9123 36 1 1.7507 -4.9841 -0.8676 37 1 5.6159 -9.3373 0.0438 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361995105.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:58 Heat of formation + Delta-G solvation = 128.936010 kcal Electronic energy + Delta-G solvation = -22512.557183 eV Core-core repulsion = 18999.182070 eV Total energy + Delta-G solvation = -3513.375113 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.27560 -39.45235 -38.29007 -34.71209 -33.94935 -32.22760 -31.71254 -31.47458 -30.79571 -28.76807 -27.12041 -25.28224 -24.28796 -23.21591 -22.00499 -21.39420 -19.41059 -18.40445 -17.36152 -17.09270 -16.50035 -16.31908 -15.99334 -15.66179 -15.01185 -14.62575 -14.27046 -14.20145 -13.95786 -13.92815 -13.89099 -13.36746 -13.09575 -13.03528 -12.33937 -11.93026 -11.81575 -11.57536 -10.91672 -10.86022 -10.78799 -10.68495 -10.64698 -10.58721 -9.80567 -9.57434 -9.44746 -9.13389 -8.86272 -8.46280 -7.92490 -7.85175 -6.23555 -6.01319 -3.68496 0.03939 0.85096 0.92950 1.32146 2.66138 3.10614 3.35798 3.37058 3.39263 3.41020 3.68574 3.76231 4.25194 4.32390 4.41452 4.41823 4.45754 4.61665 4.71526 4.78553 4.90023 4.93732 5.13333 5.20164 5.30634 5.32829 5.56270 5.60584 5.69315 5.86535 5.92939 6.02950 6.09491 6.41886 6.43212 6.64270 6.66970 7.13291 7.53928 7.79751 8.16620 8.56403 9.30275 9.43435 11.06254 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.018786 B = 0.002736 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.076803 B =10232.991958 C =11702.611962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.413 5.413 3 N -0.502 5.502 4 H 0.447 0.553 5 C 0.426 3.574 6 C -0.053 4.053 7 C -0.090 4.090 8 C -0.126 4.126 9 C -0.090 4.090 10 C -0.121 4.121 11 C -0.045 4.045 12 N -0.505 5.505 13 C 0.597 3.403 14 N -0.643 5.643 15 C 0.504 3.496 16 O -0.503 6.503 17 C -0.120 4.120 18 S -0.076 6.076 19 C -0.527 4.527 20 H 0.071 0.929 21 C 0.071 3.929 22 N -0.870 5.870 23 Si 0.917 3.083 24 H -0.275 1.275 25 H -0.284 1.284 26 H -0.275 1.275 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.111 0.889 30 H 0.122 0.878 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.137 0.863 34 H 0.152 0.848 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.218 32.341 -0.264 32.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.221 5.221 3 N -0.231 5.231 4 H 0.295 0.705 5 C 0.154 3.846 6 C -0.056 4.056 7 C -0.110 4.110 8 C -0.144 4.144 9 C -0.109 4.109 10 C -0.139 4.139 11 C -0.065 4.065 12 N -0.239 5.239 13 C 0.239 3.761 14 N -0.407 5.407 15 C 0.288 3.712 16 O -0.375 6.375 17 C -0.271 4.271 18 S 0.151 5.849 19 C -0.676 4.676 20 H 0.089 0.911 21 C -0.137 4.137 22 N -0.506 5.506 23 Si 0.743 3.257 24 H -0.200 1.200 25 H -0.210 1.210 26 H -0.200 1.200 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.130 0.870 30 H 0.140 0.860 31 H 0.149 0.851 32 H 0.147 0.853 33 H 0.154 0.846 34 H 0.170 0.830 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.760 31.502 -0.259 31.624 hybrid contribution -2.344 -0.220 0.020 2.354 sum -5.104 31.282 -0.238 31.696 Atomic orbital electron populations 1.22002 0.71443 1.05067 1.03680 1.47655 1.03908 0.96939 1.73574 1.45220 1.02314 1.02997 1.72551 0.70507 1.22262 0.83220 0.90843 0.88317 1.17656 0.88857 0.91287 1.07794 1.21101 0.99204 0.91732 0.98987 1.21022 0.92014 1.00115 1.01291 1.21483 0.97910 0.95066 0.96434 1.21291 0.99028 0.93677 0.99904 1.21598 0.90082 1.02292 0.92542 1.72318 1.19201 1.05342 1.26990 1.21038 0.80828 0.88659 0.85620 1.69459 1.38016 0.93198 1.39987 1.20641 0.85528 0.89464 0.75591 1.90761 1.19967 1.85172 1.41615 1.23157 1.05310 0.94096 1.04539 1.85225 1.05472 0.97538 1.96678 1.22858 0.95030 0.91690 1.58021 0.91107 1.24976 0.94841 0.99013 0.94908 1.70030 1.04121 1.28934 1.47532 0.86256 0.78867 0.81805 0.78728 1.20037 1.20963 1.20032 0.90833 0.90359 0.87030 0.86020 0.85141 0.85252 0.84561 0.83011 0.89678 0.89678 0.92413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.81 11.49 59.85 0.69 1.50 16 2 N -0.41 -4.67 4.12 -68.97 -0.28 -4.95 16 3 N -0.50 -4.10 7.28 32.43 0.24 -3.86 16 4 H 0.45 1.41 8.07 -182.28 -1.47 -0.06 16 5 C 0.43 4.98 7.81 -154.18 -1.20 3.78 16 6 C -0.05 -0.49 5.87 -104.98 -0.62 -1.10 16 7 C -0.09 -0.50 9.70 -39.15 -0.38 -0.88 16 8 C -0.13 -0.61 10.03 -39.64 -0.40 -1.01 16 9 C -0.09 -0.50 10.04 -39.47 -0.40 -0.89 16 10 C -0.12 -0.91 10.03 -39.64 -0.40 -1.30 16 11 C -0.04 -0.46 9.69 -39.15 -0.38 -0.84 16 12 N -0.51 -8.85 8.76 -11.49 -0.10 -8.95 16 13 C 0.60 10.46 8.37 -321.99 -2.70 7.76 16 14 N -0.64 -13.32 10.41 -13.39 -0.14 -13.46 16 15 C 0.50 12.40 7.73 -11.81 -0.09 12.31 16 16 O -0.50 -13.63 14.37 5.29 0.08 -13.56 16 17 C -0.12 -3.04 6.23 36.01 0.22 -2.82 16 18 S -0.08 -2.31 20.57 -107.50 -2.21 -4.52 16 19 C -0.53 -16.42 9.50 30.94 0.29 -16.13 16 20 H 0.07 2.10 7.80 -52.49 -0.41 1.69 16 21 C 0.07 2.17 5.49 -17.43 -0.10 2.08 16 22 N -0.87 -27.87 13.22 55.49 0.73 -27.13 16 23 Si 0.92 22.85 29.55 -169.99 -5.02 17.82 16 24 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 26 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.12 0.28 7.16 -52.49 -0.38 -0.10 16 31 H 0.13 0.30 8.06 -52.49 -0.42 -0.12 16 32 H 0.13 0.41 8.06 -52.48 -0.42 -0.01 16 33 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.15 1.95 7.83 -52.49 -0.41 1.54 16 35 H 0.08 2.06 8.14 -51.91 -0.42 1.64 16 36 H 0.08 2.06 8.14 -51.92 -0.42 1.64 16 37 H 0.27 7.90 8.31 -40.82 -0.34 7.56 16 LS Contribution 345.65 15.07 5.21 5.21 Total: -1.00 -43.41 345.65 -12.14 -55.55 By element: Atomic # 1 Polarization: 0.60 SS G_CDS: -5.18 Total: -4.59 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -5.45 Total: 2.45 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: 0.45 Total: -58.37 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: 0.08 Total: -13.56 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.82 kcal Atomic # 16 Polarization: -2.31 SS G_CDS: -2.21 Total: -4.52 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -43.41 -12.14 -55.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361995105.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.485 kcal (2) G-P(sol) polarization free energy of solvation -43.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds