Wall clock time and date at job start Tue Mar 31 2020 12:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40512 * 126.89420 * 2 1 4 4 H 0.97002 * 126.73517 * 0.06642 * 3 2 1 5 5 C 1.36663 * 106.52775 * 180.18860 * 3 2 1 6 6 C 1.47592 * 125.56664 * 179.85059 * 5 3 2 7 7 C 1.39714 * 120.15700 * 359.43697 * 6 5 3 8 8 C 1.37920 * 119.83890 * 180.27654 * 7 6 5 9 9 C 1.38386 * 120.15644 * 359.97438 * 8 7 6 10 10 C 1.38383 * 120.32443 * 0.02562 * 9 8 7 11 11 C 1.37921 * 120.15344 * 359.97438 * 10 9 8 12 12 N 1.31921 * 108.86149 * 359.58304 * 5 3 2 13 13 C 1.33640 * 110.12145 * 0.26866 * 12 5 3 14 14 N 1.33306 * 125.86580 * 179.97438 * 13 12 5 15 15 C 1.32913 * 119.99668 * 0.02562 * 14 13 12 16 16 O 1.21589 * 120.00420 * 0.02562 * 15 14 13 17 17 C 1.50708 * 120.00268 * 180.02562 * 15 14 13 18 18 S 1.80990 * 109.47364 * 180.02562 * 17 15 14 19 19 C 1.76202 * 100.00070 * 180.02562 * 18 17 15 20 20 H 1.07997 * 119.99662 * 359.97438 * 19 18 17 21 21 C 1.38803 * 120.00134 * 180.02562 * 19 18 17 22 22 N 1.31622 * 119.99902 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99810 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47292 * 59.99932 * 23 21 19 25 25 H 1.48505 * 109.47063 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.47354 * 299.99604 * 23 21 19 27 27 H 1.09001 * 109.47234 * 270.25868 * 1 2 3 28 28 H 1.08995 * 109.47168 * 30.26055 * 1 2 3 29 29 H 1.09004 * 109.47286 * 150.26168 * 1 2 3 30 30 H 1.07994 * 120.08241 * 0.25465 * 7 6 5 31 31 H 1.07998 * 119.91832 * 179.97438 * 8 7 6 32 32 H 1.08005 * 119.83874 * 179.97438 * 9 8 7 33 33 H 1.07994 * 119.92463 * 180.02562 * 10 9 8 34 34 H 1.07998 * 120.08422 * 180.02562 * 11 10 9 35 35 H 1.09002 * 109.46661 * 300.00914 * 17 15 14 36 36 H 1.08998 * 109.46467 * 60.00039 * 17 15 14 37 37 H 0.96999 * 120.00334 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3085 1.1237 0.0000 4 1 2.0351 2.0544 0.0009 5 6 3.5897 0.6481 -0.0043 6 6 4.8123 1.4749 -0.0090 7 6 4.7170 2.8687 -0.0212 8 6 5.8638 3.6349 -0.0313 9 6 7.1066 3.0262 -0.0289 10 6 7.2087 1.6462 -0.0169 11 6 6.0705 0.8674 -0.0066 12 7 3.5551 -0.6706 0.0023 13 6 2.2886 -1.0973 0.0050 14 7 1.8934 -2.3704 0.0110 15 6 2.7957 -3.3463 0.0154 16 8 3.9816 -3.0779 0.0144 17 6 2.3490 -4.7856 0.0216 18 16 3.7998 -5.8676 0.0273 19 6 3.0077 -7.4416 0.0332 20 1 1.9295 -7.5034 0.0330 21 6 3.7694 -8.6019 0.0392 22 7 5.0835 -8.5265 0.0400 23 14 2.9296 -10.2704 0.0461 24 1 2.0828 -10.4034 -1.1665 25 1 3.9577 -11.3420 0.0513 26 1 2.0807 -10.3923 1.2586 27 1 -0.3634 0.0046 1.0277 28 1 -0.3633 0.8876 -0.5178 29 1 -0.3634 -0.8923 -0.5098 30 1 3.7478 3.3450 -0.0231 31 1 5.7916 4.7124 -0.0412 32 1 8.0013 3.6311 -0.0373 33 1 8.1818 1.1780 -0.0146 34 1 6.1514 -0.2095 0.0032 35 1 1.7503 -4.9763 0.9123 36 1 1.7507 -4.9841 -0.8676 37 1 5.6159 -9.3373 0.0438 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361995105.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:57 Heat of formation + Delta-G solvation = 98.095956 kcal Electronic energy + Delta-G solvation = -22513.894508 eV Core-core repulsion = 18999.182070 eV Total energy + Delta-G solvation = -3514.712438 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.35927 -40.18594 -39.81035 -35.64837 -35.22568 -34.57103 -32.76508 -32.05946 -31.73118 -30.54049 -27.98983 -27.63295 -25.07654 -24.05355 -23.09553 -22.18824 -20.62048 -19.85576 -19.14027 -17.93144 -17.55541 -17.50893 -17.19867 -16.87151 -16.47533 -15.97408 -15.96395 -15.67172 -15.31587 -14.77641 -14.62595 -14.44234 -14.41585 -13.78437 -13.64903 -13.45402 -13.17573 -12.85560 -12.59753 -12.43825 -12.21700 -12.13247 -11.72151 -11.68423 -11.53951 -11.41751 -11.11428 -10.29998 -10.09110 -9.98226 -9.81180 -9.18719 -8.64567 -8.32058 -6.11003 -0.81207 -0.05669 0.36491 0.40734 1.30359 1.44856 1.48174 1.48982 1.63733 2.16193 2.30879 2.66605 2.83922 2.88528 3.00360 3.19594 3.53997 3.62836 3.80417 3.92394 4.02236 4.25152 4.36847 4.42706 4.43030 4.49358 4.54927 4.61222 4.61918 4.80456 4.84261 5.07432 5.29867 5.37840 5.41935 5.50764 5.56263 5.90852 6.14124 6.21853 6.29486 6.81500 7.07003 7.65447 8.77716 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.018786 B = 0.002736 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.076803 B =10232.991958 C =11702.611962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.393 5.393 3 N -0.459 5.459 4 H 0.475 0.525 5 C 0.435 3.565 6 C -0.076 4.076 7 C -0.072 4.072 8 C -0.119 4.119 9 C -0.079 4.079 10 C -0.133 4.133 11 C -0.076 4.076 12 N -0.573 5.573 13 C 0.584 3.416 14 N -0.666 5.666 15 C 0.499 3.501 16 O -0.554 6.554 17 C -0.094 4.094 18 S -0.157 6.157 19 C -0.548 4.548 20 H 0.077 0.923 21 C 0.011 3.989 22 N -0.912 5.912 23 Si 1.005 2.995 24 H -0.262 1.262 25 H -0.273 1.273 26 H -0.262 1.262 27 H 0.092 0.908 28 H 0.128 0.872 29 H 0.100 0.900 30 H 0.165 0.835 31 H 0.172 0.828 32 H 0.160 0.840 33 H 0.140 0.860 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.393 36.422 -0.297 36.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.196 5.196 3 N -0.189 5.189 4 H 0.331 0.669 5 C 0.164 3.836 6 C -0.080 4.080 7 C -0.092 4.092 8 C -0.137 4.137 9 C -0.098 4.098 10 C -0.151 4.151 11 C -0.097 4.097 12 N -0.309 5.309 13 C 0.224 3.776 14 N -0.434 5.434 15 C 0.283 3.717 16 O -0.431 6.431 17 C -0.245 4.245 18 S 0.070 5.930 19 C -0.696 4.696 20 H 0.096 0.904 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.825 3.175 24 H -0.186 1.186 25 H -0.198 1.198 26 H -0.186 1.186 27 H 0.110 0.890 28 H 0.146 0.854 29 H 0.118 0.882 30 H 0.182 0.818 31 H 0.189 0.811 32 H 0.178 0.822 33 H 0.158 0.842 34 H 0.124 0.876 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.017 35.798 -0.292 36.149 hybrid contribution -1.651 -0.993 0.029 1.927 sum -6.668 34.806 -0.262 35.440 Atomic orbital electron populations 1.22510 0.68224 1.07020 1.05540 1.48042 1.05246 0.96444 1.69882 1.45274 1.00943 1.03459 1.69180 0.66950 1.22653 0.84991 0.89596 0.86363 1.17762 0.87041 0.92804 1.10365 1.21535 1.01757 0.89515 0.96353 1.21549 0.91022 1.02029 0.99060 1.21896 0.99899 0.93926 0.94046 1.21406 0.98242 0.94985 1.00453 1.21404 0.92260 1.00580 0.95440 1.72213 1.20002 1.08669 1.29972 1.21087 0.82082 0.89148 0.85328 1.69229 1.36286 0.94059 1.43875 1.20543 0.85526 0.89893 0.75779 1.90730 1.21477 1.85447 1.45425 1.22945 1.02278 0.94210 1.05052 1.85374 1.10523 1.00118 1.96985 1.23163 0.95423 0.91834 1.59139 0.90442 1.26214 0.95574 1.03922 0.93603 1.70199 1.06097 1.30587 1.47935 0.84933 0.77858 0.75180 0.79516 1.18635 1.19781 1.18632 0.88988 0.85376 0.88162 0.81788 0.81098 0.82247 0.84209 0.87625 0.89025 0.88996 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.10 11.49 127.77 1.47 2.56 16 2 N -0.39 -8.14 4.12 -372.11 -1.53 -9.67 16 3 N -0.46 -6.09 7.28 -51.30 -0.37 -6.46 16 4 H 0.48 0.42 8.07 -213.05 -1.72 -1.30 16 5 C 0.43 10.04 7.81 136.24 1.06 11.10 16 6 C -0.08 -1.35 5.87 -20.10 -0.12 -1.47 16 7 C -0.07 -0.50 9.70 22.55 0.22 -0.28 16 8 C -0.12 -0.56 10.03 22.23 0.22 -0.34 16 9 C -0.08 -0.62 10.04 22.34 0.22 -0.40 16 10 C -0.13 -2.01 10.03 22.23 0.22 -1.79 16 11 C -0.08 -1.71 9.69 22.55 0.22 -1.49 16 12 N -0.57 -21.37 8.76 -190.27 -1.67 -23.04 16 13 C 0.58 21.11 8.37 261.20 2.19 23.30 16 14 N -0.67 -29.09 10.41 -315.57 -3.28 -32.38 16 15 C 0.50 26.46 7.73 87.95 0.68 27.14 16 16 O -0.55 -32.95 14.37 -3.99 -0.06 -33.01 16 17 C -0.09 -5.05 6.23 71.24 0.44 -4.60 16 18 S -0.16 -10.21 20.57 -56.49 -1.16 -11.37 16 19 C -0.55 -35.34 9.50 67.96 0.65 -34.69 16 20 H 0.08 4.72 7.80 -2.91 -0.02 4.69 16 21 C 0.01 0.70 5.49 84.86 0.47 1.16 16 22 N -0.91 -60.34 13.22 21.65 0.29 -60.06 16 23 Si 1.00 47.44 29.55 68.60 2.03 49.47 16 24 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 25 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 26 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 27 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.16 -0.35 7.16 -2.91 -0.02 -0.37 16 31 H 0.17 -0.44 8.06 -2.91 -0.02 -0.46 16 32 H 0.16 0.32 8.06 -2.91 -0.02 0.30 16 33 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 34 H 0.11 3.30 7.83 -2.91 -0.02 3.28 16 35 H 0.09 4.70 8.14 -2.39 -0.02 4.68 16 36 H 0.09 4.71 8.14 -2.40 -0.02 4.69 16 37 H 0.27 16.55 8.31 -92.71 -0.77 15.78 16 Total: -1.00 -106.20 345.65 1.58 -104.63 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -0.60 Total: 1.68 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: 7.94 Total: 20.21 kcal Atomic # 7 Polarization: -125.03 SS G_CDS: -6.57 Total: -131.61 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: -0.06 Total: -33.01 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Atomic # 16 Polarization: -10.21 SS G_CDS: -1.16 Total: -11.37 kcal Total: -106.20 1.58 -104.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361995105.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.721 kcal (2) G-P(sol) polarization free energy of solvation -106.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds