Wall clock time and date at job start Tue Mar 31 2020 12:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.34763 * 125.87599 * 2 1 4 4 C 1.36526 * 107.60206 * 180.02562 * 3 2 1 5 5 C 1.48298 * 126.24359 * 180.02562 * 4 3 2 6 6 N 1.32621 * 119.77476 * 324.99776 * 5 4 3 7 7 C 1.31803 * 121.67659 * 179.97438 * 6 5 4 8 8 C 1.38244 * 121.04631 * 359.97438 * 7 6 5 9 9 C 1.38667 * 119.44362 * 0.27465 * 8 7 6 10 10 C 1.39022 * 118.45529 * 359.48583 * 9 8 7 11 11 N 1.39865 * 120.53513 * 180.26232 * 10 9 8 12 12 C 1.34775 * 120.00167 * 325.47693 * 11 10 9 13 13 O 1.21294 * 119.99637 * 4.42694 * 12 11 10 14 14 C 1.50697 * 120.00460 * 184.43085 * 12 11 10 15 15 S 1.80999 * 109.47374 * 180.02562 * 14 12 11 16 16 C 1.76197 * 99.99796 * 179.97438 * 15 14 12 17 17 H 1.07999 * 120.00401 * 359.97438 * 16 15 14 18 18 C 1.38800 * 119.99873 * 180.02562 * 16 15 14 19 19 N 1.31633 * 120.00218 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00187 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46871 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47072 * 119.99601 * 20 18 16 23 23 H 1.48498 * 109.46781 * 240.00012 * 20 18 16 24 24 C 1.40923 * 107.52347 * 0.26452 * 4 3 2 25 25 N 1.30646 * 108.07618 * 359.55368 * 24 4 3 26 26 H 1.08998 * 109.46982 * 90.00267 * 1 2 3 27 27 H 1.08992 * 109.46654 * 209.99542 * 1 2 3 28 28 H 1.08999 * 109.46761 * 329.99560 * 1 2 3 29 29 H 1.08004 * 126.20166 * 0.02562 * 3 2 1 30 30 H 1.08004 * 119.47480 * 179.97438 * 7 6 5 31 31 H 1.08005 * 120.27907 * 179.97438 * 8 7 6 32 32 H 1.08005 * 120.77896 * 179.72587 * 9 8 7 33 33 H 0.97001 * 119.99759 * 145.47915 * 11 10 9 34 34 H 1.09002 * 109.46986 * 300.00021 * 14 12 11 35 35 H 1.08995 * 109.47276 * 59.99679 * 14 12 11 36 36 H 0.96991 * 120.00288 * 180.02562 * 19 18 16 37 37 H 1.07996 * 125.96045 * 179.73885 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2549 1.0920 0.0000 4 6 3.5513 0.6639 -0.0006 5 6 4.7588 1.5247 -0.0003 6 7 4.7477 2.6752 -0.6598 7 6 5.7994 3.4693 -0.6841 8 6 6.9630 3.1320 -0.0183 9 6 7.0259 1.9364 0.6814 10 6 5.9021 1.1181 0.6968 11 7 5.9158 -0.0947 1.3934 12 6 7.0481 -0.8229 1.4565 13 8 8.0752 -0.3895 0.9786 14 6 7.0381 -2.1756 2.1207 15 16 8.6964 -2.8971 2.0453 16 6 8.4025 -4.4262 2.8700 17 1 7.4149 -4.6592 3.2399 18 6 9.4405 -5.3308 3.0452 19 7 10.6443 -5.0467 2.5948 20 14 9.1292 -6.9517 3.9202 21 1 7.7031 -7.0285 4.3271 22 1 9.4444 -8.0772 3.0041 23 1 9.9926 -7.0374 5.1253 24 6 3.5328 -0.7452 -0.0071 25 7 2.2857 -1.1343 -0.0006 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3632 -0.8900 0.5137 28 1 -0.3633 0.8900 0.5139 29 1 1.9225 2.1196 0.0004 30 1 5.7513 4.3982 -1.2330 31 1 7.8176 3.7918 -0.0469 32 1 7.9255 1.6495 1.2056 33 1 5.1103 -0.4117 1.8311 34 1 6.7368 -2.0666 3.1626 35 1 6.3337 -2.8283 1.6052 36 1 11.3696 -5.6790 2.7170 37 1 4.3986 -1.3908 -0.0132 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000372719914.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:51 Heat of formation + Delta-G solvation = 86.291488 kcal Electronic energy + Delta-G solvation = -22919.645556 eV Core-core repulsion = 19404.421238 eV Total energy + Delta-G solvation = -3515.224318 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.59680 -40.42937 -38.86113 -35.03727 -33.70810 -32.46315 -32.43078 -31.20439 -29.70439 -28.43267 -27.00967 -25.52880 -23.80239 -23.26735 -21.18676 -20.78214 -20.40950 -18.22503 -17.66568 -17.30641 -16.69854 -15.97898 -15.86462 -15.70748 -14.99623 -14.83166 -14.64166 -14.33922 -13.99824 -13.89008 -13.41846 -13.21904 -13.06713 -12.97234 -12.76314 -12.64480 -12.40008 -12.06995 -11.09047 -11.05815 -11.00416 -10.79791 -10.73448 -10.01246 -9.88271 -9.77959 -9.69848 -9.33774 -9.10517 -8.81167 -8.30632 -7.91638 -6.55485 -6.25349 -3.96658 0.86176 1.28392 1.69763 2.20683 2.56244 2.82642 2.90151 3.20338 3.25776 3.30425 3.56958 3.86123 4.11547 4.16485 4.36034 4.59946 4.75428 4.79374 4.83446 4.98532 5.01544 5.05538 5.10431 5.14511 5.31303 5.38122 5.53777 5.59721 5.75501 5.76989 6.02363 6.07323 6.23895 6.28655 6.35205 6.66427 6.84112 7.40738 7.41213 7.57336 7.93717 8.31958 8.33332 9.20552 10.82113 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.014162 B = 0.003342 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.695410 B = 8375.506251 C =10215.843558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.375 5.375 3 C 0.098 3.902 4 C -0.199 4.199 5 C 0.182 3.818 6 N -0.469 5.469 7 C 0.078 3.922 8 C -0.159 4.159 9 C -0.077 4.077 10 C 0.117 3.883 11 N -0.673 5.673 12 C 0.532 3.468 13 O -0.496 6.496 14 C -0.155 4.155 15 S -0.055 6.055 16 C -0.536 4.536 17 H 0.074 0.926 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.271 1.271 22 H -0.279 1.279 23 H -0.280 1.280 24 C 0.068 3.932 25 N -0.290 5.290 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.181 0.819 30 H 0.155 0.845 31 H 0.136 0.864 32 H 0.154 0.846 33 H 0.411 0.589 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.268 0.732 37 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.824 15.966 -3.966 24.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.155 5.155 3 C -0.051 4.051 4 C -0.212 4.212 5 C 0.041 3.959 6 N -0.177 5.177 7 C -0.080 4.080 8 C -0.180 4.180 9 C -0.105 4.105 10 C 0.019 3.981 11 N -0.321 5.321 12 C 0.319 3.681 13 O -0.368 6.368 14 C -0.305 4.305 15 S 0.171 5.829 16 C -0.684 4.684 17 H 0.093 0.907 18 C -0.135 4.135 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.206 1.206 24 C -0.120 4.120 25 N -0.110 5.110 26 H 0.095 0.905 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.198 0.802 30 H 0.172 0.828 31 H 0.154 0.846 32 H 0.172 0.828 33 H 0.249 0.751 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.078 0.922 37 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -18.643 15.779 -5.198 24.971 hybrid contribution -0.383 -1.193 1.664 2.083 sum -19.026 14.585 -3.534 24.232 Atomic orbital electron populations 1.21909 0.73825 1.04696 1.03625 1.48457 1.06931 1.03871 1.56281 1.22581 0.90244 0.93394 0.98838 1.18417 0.91290 0.92258 1.19204 1.18695 0.91314 0.92119 0.93752 1.67633 1.29660 1.03555 1.16895 1.22553 0.88650 0.98720 0.98060 1.22080 0.99591 0.97283 0.99022 1.21796 0.98790 0.91839 0.98068 1.18619 0.95685 0.87687 0.96084 1.43707 1.14988 1.19857 1.53559 1.20604 0.82413 0.86281 0.78788 1.90698 1.30929 1.70854 1.44348 1.23557 1.09069 0.94865 1.03017 1.85404 1.01668 1.19173 1.76646 1.22900 0.98857 1.03478 1.43174 0.90736 1.24993 0.94412 0.98668 0.95458 1.70017 1.00637 1.36066 1.43524 0.86108 0.78485 0.81803 0.79066 1.19564 1.20525 1.20557 1.24112 0.95291 0.93897 0.98733 1.77351 1.01532 1.07837 1.24265 0.90512 0.89033 0.89314 0.80204 0.82775 0.84592 0.82842 0.75131 0.88715 0.88652 0.92180 0.79610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.51 11.46 59.85 0.69 1.20 16 2 N -0.37 -3.65 4.00 -67.88 -0.27 -3.93 16 3 C 0.10 0.96 11.37 -16.88 -0.19 0.77 16 4 C -0.20 -2.41 5.56 -105.36 -0.59 -2.99 16 5 C 0.18 2.40 6.69 -82.75 -0.55 1.85 16 6 N -0.47 -5.94 10.23 -9.64 -0.10 -6.04 16 7 C 0.08 0.85 11.17 -17.56 -0.20 0.66 16 8 C -0.16 -1.79 10.10 -39.42 -0.40 -2.19 16 9 C -0.08 -1.08 8.81 -39.13 -0.34 -1.43 16 10 C 0.12 1.65 6.30 -83.26 -0.52 1.13 16 11 N -0.67 -9.36 3.94 -9.58 -0.04 -9.40 16 12 C 0.53 9.42 7.71 -10.99 -0.08 9.34 16 13 O -0.50 -10.44 13.32 5.55 0.07 -10.36 16 14 C -0.15 -2.96 6.16 36.00 0.22 -2.74 16 15 S -0.06 -1.45 20.57 -107.50 -2.21 -3.66 16 16 C -0.54 -14.94 9.50 30.94 0.29 -14.65 16 17 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 18 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 19 N -0.87 -25.77 13.22 55.49 0.73 -25.04 16 20 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 C 0.07 0.85 10.15 -17.04 -0.17 0.67 16 25 N -0.29 -3.67 12.54 30.81 0.39 -3.28 16 26 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.18 1.28 8.06 -52.48 -0.42 0.86 16 30 H 0.15 1.17 8.06 -52.48 -0.42 0.75 16 31 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 32 H 0.15 2.39 6.29 -52.48 -0.33 2.06 16 33 H 0.41 4.79 7.14 -40.82 -0.29 4.50 16 34 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 35 H 0.10 1.68 8.14 -51.92 -0.42 1.25 16 36 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.19 2.28 7.26 -52.49 -0.38 1.90 16 LS Contribution 340.83 15.07 5.14 5.14 Total: -1.00 -35.56 340.83 -7.19 -42.75 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -3.93 Total: 4.07 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -1.95 Total: -6.40 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 0.71 Total: -47.68 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.07 Total: -10.36 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.45 SS G_CDS: -2.21 Total: -3.66 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.56 -7.19 -42.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372719914.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.038 kcal (2) G-P(sol) polarization free energy of solvation -35.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds