Wall clock time and date at job start Tue Mar 31 2020 12:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.34763 * 125.87599 * 2 1 4 4 C 1.36526 * 107.60206 * 180.02562 * 3 2 1 5 5 C 1.48298 * 126.24359 * 180.02562 * 4 3 2 6 6 N 1.32621 * 119.77476 * 324.99776 * 5 4 3 7 7 C 1.31803 * 121.67659 * 179.97438 * 6 5 4 8 8 C 1.38244 * 121.04631 * 359.97438 * 7 6 5 9 9 C 1.38667 * 119.44362 * 0.27465 * 8 7 6 10 10 C 1.39022 * 118.45529 * 359.48583 * 9 8 7 11 11 N 1.39865 * 120.53513 * 180.26232 * 10 9 8 12 12 C 1.34775 * 120.00167 * 325.47693 * 11 10 9 13 13 O 1.21294 * 119.99637 * 4.42694 * 12 11 10 14 14 C 1.50697 * 120.00460 * 184.43085 * 12 11 10 15 15 S 1.80999 * 109.47374 * 180.02562 * 14 12 11 16 16 C 1.76197 * 99.99796 * 179.97438 * 15 14 12 17 17 H 1.07999 * 120.00401 * 359.97438 * 16 15 14 18 18 C 1.38800 * 119.99873 * 180.02562 * 16 15 14 19 19 N 1.31633 * 120.00218 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00187 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46871 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47072 * 119.99601 * 20 18 16 23 23 H 1.48498 * 109.46781 * 240.00012 * 20 18 16 24 24 C 1.40923 * 107.52347 * 0.26452 * 4 3 2 25 25 N 1.30646 * 108.07618 * 359.55368 * 24 4 3 26 26 H 1.08998 * 109.46982 * 90.00267 * 1 2 3 27 27 H 1.08992 * 109.46654 * 209.99542 * 1 2 3 28 28 H 1.08999 * 109.46761 * 329.99560 * 1 2 3 29 29 H 1.08004 * 126.20166 * 0.02562 * 3 2 1 30 30 H 1.08004 * 119.47480 * 179.97438 * 7 6 5 31 31 H 1.08005 * 120.27907 * 179.97438 * 8 7 6 32 32 H 1.08005 * 120.77896 * 179.72587 * 9 8 7 33 33 H 0.97001 * 119.99759 * 145.47915 * 11 10 9 34 34 H 1.09002 * 109.46986 * 300.00021 * 14 12 11 35 35 H 1.08995 * 109.47276 * 59.99679 * 14 12 11 36 36 H 0.96991 * 120.00288 * 180.02562 * 19 18 16 37 37 H 1.07996 * 125.96045 * 179.73885 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2549 1.0920 0.0000 4 6 3.5513 0.6639 -0.0006 5 6 4.7588 1.5247 -0.0003 6 7 4.7477 2.6752 -0.6598 7 6 5.7994 3.4693 -0.6841 8 6 6.9630 3.1320 -0.0183 9 6 7.0259 1.9364 0.6814 10 6 5.9021 1.1181 0.6968 11 7 5.9158 -0.0947 1.3934 12 6 7.0481 -0.8229 1.4565 13 8 8.0752 -0.3895 0.9786 14 6 7.0381 -2.1756 2.1207 15 16 8.6964 -2.8971 2.0453 16 6 8.4025 -4.4262 2.8700 17 1 7.4149 -4.6592 3.2399 18 6 9.4405 -5.3308 3.0452 19 7 10.6443 -5.0467 2.5948 20 14 9.1292 -6.9517 3.9202 21 1 7.7031 -7.0285 4.3271 22 1 9.4444 -8.0772 3.0041 23 1 9.9926 -7.0374 5.1253 24 6 3.5328 -0.7452 -0.0071 25 7 2.2857 -1.1343 -0.0006 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3632 -0.8900 0.5137 28 1 -0.3633 0.8900 0.5139 29 1 1.9225 2.1196 0.0004 30 1 5.7513 4.3982 -1.2330 31 1 7.8176 3.7918 -0.0469 32 1 7.9255 1.6495 1.2056 33 1 5.1103 -0.4117 1.8311 34 1 6.7368 -2.0666 3.1626 35 1 6.3337 -2.8283 1.6052 36 1 11.3696 -5.6790 2.7170 37 1 4.3986 -1.3908 -0.0132 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000372719914.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:50 Heat of formation + Delta-G solvation = 61.928790 kcal Electronic energy + Delta-G solvation = -22920.702002 eV Core-core repulsion = 19404.421238 eV Total energy + Delta-G solvation = -3516.280764 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.47682 -41.50477 -40.06182 -36.24360 -34.59011 -34.47905 -33.33243 -32.37653 -30.77237 -29.57285 -27.72763 -27.62784 -24.78924 -24.26009 -22.02794 -21.79112 -21.55055 -19.93546 -18.82412 -18.33889 -18.06236 -17.04330 -16.88305 -16.81923 -16.42708 -16.20392 -16.07602 -15.49395 -15.11237 -14.99787 -14.63859 -14.50963 -14.08443 -13.91924 -13.72248 -13.56866 -13.42471 -13.16199 -13.05520 -12.92026 -12.62198 -11.92184 -11.84178 -11.74018 -11.27172 -11.16082 -10.75946 -10.50449 -10.44378 -10.29590 -9.81149 -8.88044 -8.66456 -8.35511 -6.13030 -0.07691 0.26772 0.87694 1.21751 1.41224 1.43283 1.49045 1.56535 1.57066 1.66871 2.09413 2.25876 2.91204 2.99209 3.23942 3.30816 3.58709 3.75430 3.89837 3.98360 4.10462 4.18093 4.22615 4.26292 4.39632 4.46300 4.48084 4.61121 4.71245 4.74766 4.88205 5.07104 5.27517 5.28851 5.42472 5.42801 5.81946 6.00401 6.19783 6.23382 6.57214 6.96804 7.02797 7.06629 8.73792 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.014162 B = 0.003342 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.695410 B = 8375.506251 C =10215.843558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.369 5.369 3 C 0.115 3.885 4 C -0.224 4.224 5 C 0.186 3.814 6 N -0.478 5.478 7 C 0.087 3.913 8 C -0.157 4.157 9 C -0.095 4.095 10 C 0.091 3.909 11 N -0.650 5.650 12 C 0.537 3.463 13 O -0.535 6.535 14 C -0.131 4.131 15 S -0.139 6.139 16 C -0.547 4.547 17 H 0.083 0.917 18 C 0.015 3.985 19 N -0.910 5.910 20 Si 0.997 3.003 21 H -0.258 1.258 22 H -0.274 1.274 23 H -0.274 1.274 24 C 0.057 3.943 25 N -0.319 5.319 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.121 0.879 29 H 0.212 0.788 30 H 0.194 0.806 31 H 0.163 0.837 32 H 0.131 0.869 33 H 0.422 0.578 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.271 0.729 37 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.755 17.118 -3.893 27.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.149 5.149 3 C -0.035 4.035 4 C -0.237 4.237 5 C 0.046 3.954 6 N -0.187 5.187 7 C -0.071 4.071 8 C -0.177 4.177 9 C -0.123 4.123 10 C -0.006 4.006 11 N -0.298 5.298 12 C 0.325 3.675 13 O -0.411 6.411 14 C -0.282 4.282 15 S 0.089 5.911 16 C -0.694 4.694 17 H 0.101 0.899 18 C -0.190 4.190 19 N -0.547 5.547 20 Si 0.819 3.181 21 H -0.181 1.181 22 H -0.200 1.200 23 H -0.199 1.199 24 C -0.130 4.130 25 N -0.140 5.140 26 H 0.108 0.892 27 H 0.111 0.889 28 H 0.139 0.861 29 H 0.228 0.772 30 H 0.210 0.790 31 H 0.181 0.819 32 H 0.149 0.851 33 H 0.262 0.738 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.080 0.920 37 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -21.641 16.942 -5.123 27.957 hybrid contribution 0.364 -1.361 1.560 2.102 sum -21.277 15.581 -3.563 26.611 Atomic orbital electron populations 1.22330 0.71161 1.06449 1.05045 1.48837 1.08355 1.03062 1.54670 1.22997 0.89408 0.94535 0.96588 1.18486 0.91996 0.91911 1.21292 1.18804 0.91192 0.92382 0.93067 1.67733 1.30435 1.03574 1.16941 1.23204 0.87647 0.99335 0.96872 1.22373 1.00888 0.96452 0.97982 1.21806 0.98111 0.93385 0.99030 1.18752 0.96564 0.87712 0.97590 1.43299 1.14026 1.19586 1.52931 1.20267 0.82884 0.85933 0.78433 1.90691 1.32548 1.71534 1.46322 1.23371 1.04387 0.95621 1.04808 1.85529 1.08254 1.20267 1.77091 1.23240 0.99368 1.03785 1.43044 0.89890 1.26088 0.94003 1.02759 0.96138 1.70173 1.01786 1.37651 1.45069 0.84930 0.78997 0.76479 0.77706 1.18121 1.19989 1.19910 1.24038 0.95301 0.94291 0.99370 1.77283 1.01867 1.09584 1.25287 0.89216 0.88868 0.86066 0.77185 0.78963 0.81940 0.85083 0.73810 0.86743 0.86810 0.91974 0.80459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.64 11.46 127.77 1.46 2.11 16 2 N -0.37 -6.35 4.00 -368.68 -1.47 -7.82 16 3 C 0.11 1.95 11.37 83.84 0.95 2.91 16 4 C -0.22 -5.13 5.56 -20.34 -0.11 -5.25 16 5 C 0.19 4.69 6.69 42.12 0.28 4.98 16 6 N -0.48 -11.05 10.23 -184.42 -1.89 -12.93 16 7 C 0.09 1.66 11.17 84.70 0.95 2.60 16 8 C -0.16 -3.29 10.10 22.37 0.23 -3.07 16 9 C -0.10 -2.71 8.81 22.56 0.20 -2.51 16 10 C 0.09 2.57 6.30 38.46 0.24 2.81 16 11 N -0.65 -18.28 3.94 -302.62 -1.19 -19.48 16 12 C 0.54 19.59 7.71 87.66 0.68 20.26 16 13 O -0.54 -23.62 13.32 -3.07 -0.04 -23.66 16 14 C -0.13 -5.07 6.16 71.23 0.44 -4.63 16 15 S -0.14 -7.52 20.57 -56.49 -1.16 -8.69 16 16 C -0.55 -30.88 9.50 67.95 0.65 -30.23 16 17 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 18 C 0.02 0.85 5.49 84.86 0.47 1.32 16 19 N -0.91 -55.48 13.22 21.65 0.29 -55.19 16 20 Si 1.00 43.52 29.55 68.60 2.03 45.55 16 21 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 24 C 0.06 1.41 10.15 85.53 0.87 2.28 16 25 N -0.32 -7.78 12.54 -56.42 -0.71 -8.49 16 26 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 29 H 0.21 2.15 8.06 -2.91 -0.02 2.13 16 30 H 0.19 2.10 8.06 -2.91 -0.02 2.07 16 31 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 32 H 0.13 4.31 6.29 -2.91 -0.02 4.29 16 33 H 0.42 9.77 7.14 -92.71 -0.66 9.10 16 34 H 0.11 3.97 8.14 -2.39 -0.02 3.96 16 35 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 36 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 37 H 0.18 4.48 7.26 -2.91 -0.02 4.45 16 Total: -1.00 -79.95 340.83 3.60 -76.35 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 0.46 Total: 20.79 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: 7.29 Total: -6.44 kcal Atomic # 7 Polarization: -98.93 SS G_CDS: -4.98 Total: -103.91 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.04 Total: -23.66 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: -7.52 SS G_CDS: -1.16 Total: -8.69 kcal Total: -79.95 3.60 -76.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372719914.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.282 kcal (2) G-P(sol) polarization free energy of solvation -79.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds