Wall clock time and date at job start Tue Mar 31 2020 12:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47425 * 2 1 4 4 C 1.30797 * 120.00020 * 119.99540 * 3 2 1 5 5 N 1.35546 * 125.32411 * 180.02562 * 4 3 2 6 6 H 0.96999 * 122.70889 * 359.77303 * 5 4 3 7 7 C 1.37680 * 114.57875 * 179.73898 * 5 4 3 8 8 C 1.46410 * 122.40358 * 179.97438 * 7 5 4 9 9 O 1.21740 * 119.99886 * 179.97438 * 8 7 5 10 10 N 1.34777 * 119.99939 * 0.02562 * 8 7 5 11 11 C 1.39356 * 119.99732 * 175.11646 * 10 8 7 12 12 C 1.38671 * 119.64651 * 184.92707 * 11 10 8 13 13 C 1.40820 * 118.67192 * 179.78430 * 12 11 10 14 14 C 1.41538 * 121.00125 * 180.26346 * 13 12 11 15 15 H 1.07995 * 120.00490 * 203.94572 * 14 13 12 16 16 C 1.40037 * 119.99893 * 23.94115 * 14 13 12 17 17 N 1.30740 * 120.00004 * 16.60264 * 16 14 13 18 18 Si 1.86798 * 119.99974 * 196.59837 * 16 14 13 19 19 H 1.48503 * 109.47325 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46965 * 120.00336 * 18 16 14 21 21 H 1.48501 * 109.47229 * 240.00196 * 18 16 14 22 22 C 1.41168 * 118.00094 * 0.48086 * 13 12 11 23 23 C 1.36587 * 119.13652 * 359.75968 * 22 13 12 24 24 N 1.32067 * 121.26286 * 359.97438 * 23 22 13 25 25 C 1.33538 * 115.19465 * 0.02562 * 7 5 4 26 26 S 1.75846 * 109.86086 * 359.97438 * 25 7 5 27 27 H 1.09003 * 109.47624 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47041 * 299.99738 * 1 2 3 29 29 H 1.09003 * 109.46919 * 59.99802 * 1 2 3 30 30 H 1.08999 * 109.47339 * 239.99988 * 2 1 3 31 31 H 1.09003 * 109.46919 * 120.00198 * 2 1 3 32 32 H 0.96994 * 119.99912 * 355.12367 * 10 8 7 33 33 H 1.08004 * 120.67137 * 0.02701 * 12 11 10 34 34 H 0.96997 * 120.00319 * 180.02562 * 17 16 14 35 35 H 1.08005 * 120.42860 * 179.77752 * 22 13 12 36 36 H 1.08000 * 119.36991 * 180.02562 * 23 22 13 37 37 H 1.08001 * 125.06932 * 180.02562 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.7703 1.8090 0.9810 5 7 3.2791 3.0606 1.0902 6 1 3.1206 3.7505 0.4271 7 6 4.0385 3.2736 2.2187 8 6 4.6701 4.5625 2.5075 9 8 5.3324 4.7026 3.5194 10 7 4.5175 5.5941 1.6538 11 6 5.0321 6.8482 1.9772 12 6 4.7830 7.9277 1.1432 13 6 5.3091 9.1865 1.4921 14 6 5.0806 10.3227 0.6797 15 1 5.7642 11.1581 0.7148 16 6 3.9681 10.3637 -0.1699 17 7 2.9778 9.5291 0.0092 18 14 3.8991 11.6108 -1.5589 19 1 5.1355 12.4333 -1.5476 20 1 3.7901 10.8994 -2.8578 21 1 2.7170 12.4908 -1.3757 22 6 6.0753 9.2801 2.6741 23 6 6.2715 8.1595 3.4299 24 7 5.7585 6.9953 3.0755 25 6 4.1586 2.2200 3.0303 26 16 3.2735 0.8522 2.3686 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.0493 5.4638 0.8144 33 1 4.1940 7.8065 0.2461 34 1 2.2074 9.5572 -0.5795 35 1 6.5004 10.2257 2.9769 36 1 6.8566 8.2269 4.3352 37 1 4.7155 2.2098 3.9556 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532671359.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:53 Heat of formation + Delta-G solvation = 53.774409 kcal Electronic energy + Delta-G solvation = -22865.051959 eV Core-core repulsion = 19348.417595 eV Total energy + Delta-G solvation = -3516.634365 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.64086 -39.05352 -37.78789 -35.89594 -34.61088 -33.95154 -31.59136 -30.66126 -29.47707 -29.00825 -26.15233 -25.48862 -23.25527 -22.16345 -21.75985 -21.05839 -19.92358 -18.64665 -18.01563 -17.42480 -16.38399 -15.85692 -15.58991 -15.33787 -14.94784 -14.55882 -14.33935 -14.31820 -14.23386 -13.86312 -13.70274 -12.99970 -12.92986 -12.70861 -12.43313 -12.24600 -11.78311 -11.56193 -11.49392 -11.29638 -10.99386 -10.54899 -10.42830 -10.28394 -10.01347 -9.89627 -9.84999 -9.47548 -9.46225 -8.12201 -7.90601 -7.55270 -7.21101 -6.93725 -4.71960 0.93573 1.00893 1.48970 1.82740 2.48928 2.57210 2.69018 2.96692 3.01667 3.13422 3.31748 3.49795 3.77396 4.43859 4.55930 4.73198 4.85752 5.08173 5.18140 5.28858 5.44034 5.55828 5.55980 5.74437 5.82513 5.96630 6.15879 6.37652 6.49216 6.69408 6.75913 6.82039 6.98466 7.22046 7.30778 7.46400 7.58403 7.76726 8.01390 8.23549 8.48203 8.61748 8.65378 9.52620 9.95460 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.014987 B = 0.003220 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.835056 B = 8694.313412 C =10430.686486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.065 3.935 3 N -0.569 5.569 4 C 0.364 3.636 5 N -0.614 5.614 6 H 0.426 0.574 7 C 0.080 3.920 8 C 0.563 3.437 9 O -0.452 6.452 10 N -0.648 5.648 11 C 0.335 3.665 12 C -0.241 4.241 13 C 0.143 3.857 14 C -0.452 4.452 15 H 0.084 0.916 16 C 0.078 3.922 17 N -0.785 5.785 18 Si 0.912 3.088 19 H -0.259 1.259 20 H -0.270 1.270 21 H -0.273 1.273 22 C -0.279 4.279 23 C 0.121 3.879 24 N -0.557 5.557 25 C -0.185 4.185 26 S 0.015 5.985 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.044 0.956 32 H 0.405 0.595 33 H 0.129 0.871 34 H 0.283 0.717 35 H 0.104 0.896 36 H 0.125 0.875 37 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.393 -14.181 -1.168 14.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.066 4.066 3 N -0.304 5.304 4 C -0.022 4.022 5 N -0.242 5.242 6 H 0.266 0.734 7 C -0.035 4.035 8 C 0.344 3.656 9 O -0.321 6.321 10 N -0.293 5.293 11 C 0.110 3.890 12 C -0.267 4.267 13 C 0.134 3.866 14 C -0.482 4.482 15 H 0.102 0.898 16 C -0.142 4.142 17 N -0.410 5.410 18 Si 0.736 3.264 19 H -0.182 1.182 20 H -0.195 1.195 21 H -0.198 1.198 22 C -0.303 4.303 23 C -0.032 4.032 24 N -0.277 5.277 25 C -0.328 4.328 26 S 0.255 5.745 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.062 0.938 32 H 0.240 0.760 33 H 0.146 0.854 34 H 0.094 0.906 35 H 0.122 0.878 36 H 0.143 0.857 37 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -3.630 -16.046 -0.320 16.455 hybrid contribution -0.286 2.398 -1.714 2.961 sum -3.916 -13.648 -2.035 14.344 Atomic orbital electron populations 1.21763 0.94056 1.01700 1.02770 1.21956 0.96371 0.87160 1.01085 1.71769 1.19698 1.17144 1.21777 1.24301 0.95090 0.88637 0.94220 1.41603 1.48408 1.11270 1.22960 0.73371 1.19494 0.98306 0.96948 0.88752 1.17151 0.81909 0.81742 0.84812 1.90985 1.35709 1.80817 1.24571 1.43237 1.56101 1.08456 1.21530 1.18074 0.94686 0.83065 0.93151 1.21547 1.11191 0.91215 1.02717 1.17577 0.87498 0.92030 0.89445 1.19639 1.07869 1.02119 1.18618 0.89761 1.25985 0.94356 0.96355 0.97498 1.69767 1.04899 1.32971 1.33383 0.86194 0.79491 0.80450 0.80283 1.18203 1.19537 1.19794 1.21688 1.11049 0.98696 0.98844 1.21479 0.96298 0.87782 0.97678 1.67173 1.16191 1.26598 1.17704 1.25016 1.08356 0.93667 1.05745 1.85335 1.55119 1.14808 1.19196 0.91836 0.92679 0.91708 0.89902 0.93774 0.76011 0.85373 0.90611 0.87825 0.85738 0.79124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 10.24 37.16 0.38 -0.90 16 2 C 0.07 0.66 7.06 -4.04 -0.03 0.63 16 3 N -0.57 -7.25 10.65 -61.51 -0.65 -7.91 16 4 C 0.36 4.56 8.33 -89.67 -0.75 3.82 16 5 N -0.61 -7.66 5.63 -10.73 -0.06 -7.72 16 6 H 0.43 4.77 7.57 -40.82 -0.31 4.46 16 7 C 0.08 1.12 6.70 -83.60 -0.56 0.56 16 8 C 0.56 10.03 7.72 -12.97 -0.10 9.93 16 9 O -0.45 -9.64 14.86 5.15 0.08 -9.57 16 10 N -0.65 -11.90 5.38 -12.74 -0.07 -11.97 16 11 C 0.33 7.69 7.42 -154.76 -1.15 6.55 16 12 C -0.24 -5.82 8.63 -38.45 -0.33 -6.16 16 13 C 0.14 3.60 5.60 -106.55 -0.60 3.01 16 14 C -0.45 -11.15 9.12 -37.65 -0.34 -11.50 16 15 H 0.08 2.00 7.90 -52.49 -0.41 1.58 16 16 C 0.08 1.80 5.20 -17.34 -0.09 1.71 16 17 N -0.79 -18.61 10.92 55.55 0.61 -18.00 16 18 Si 0.91 17.30 29.59 -169.99 -5.03 12.27 16 19 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 20 H -0.27 -5.05 7.11 56.52 0.40 -4.64 16 21 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 22 C -0.28 -6.56 9.85 -39.07 -0.38 -6.94 16 23 C 0.12 2.77 11.10 -18.05 -0.20 2.57 16 24 N -0.56 -13.52 7.85 -12.77 -0.10 -13.62 16 25 C -0.19 -2.32 10.64 29.09 0.31 -2.01 16 26 S 0.02 0.17 21.37 -107.50 -2.30 -2.13 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.04 0.42 6.19 -51.93 -0.32 0.10 16 32 H 0.40 6.06 7.29 -40.82 -0.30 5.76 16 33 H 0.13 3.06 6.20 -52.48 -0.33 2.74 16 34 H 0.28 6.06 8.29 -40.82 -0.34 5.72 16 35 H 0.10 2.23 8.06 -52.48 -0.42 1.80 16 36 H 0.13 2.47 8.06 -52.49 -0.42 2.05 16 37 H 0.19 2.21 7.94 -52.49 -0.42 1.79 16 LS Contribution 335.23 15.07 5.05 5.05 Total: -1.00 -29.49 335.23 -10.07 -39.56 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -3.76 Total: 12.76 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -3.84 Total: 1.27 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: -0.28 Total: -59.21 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.08 Total: -9.57 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.27 kcal Atomic # 16 Polarization: 0.17 SS G_CDS: -2.30 Total: -2.13 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.49 -10.07 -39.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532671359.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.335 kcal (2) G-P(sol) polarization free energy of solvation -29.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds