Wall clock time and date at job start Tue Mar 31 2020 12:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47425 * 2 1 4 4 C 1.30797 * 120.00020 * 119.99540 * 3 2 1 5 5 N 1.35546 * 125.32411 * 180.02562 * 4 3 2 6 6 H 0.96999 * 122.70889 * 359.77303 * 5 4 3 7 7 C 1.37680 * 114.57875 * 179.73898 * 5 4 3 8 8 C 1.46410 * 122.40358 * 179.97438 * 7 5 4 9 9 O 1.21740 * 119.99886 * 179.97438 * 8 7 5 10 10 N 1.34777 * 119.99939 * 0.02562 * 8 7 5 11 11 C 1.39356 * 119.99732 * 175.11646 * 10 8 7 12 12 C 1.38671 * 119.64651 * 184.92707 * 11 10 8 13 13 C 1.40820 * 118.67192 * 179.78430 * 12 11 10 14 14 C 1.41538 * 121.00125 * 180.26346 * 13 12 11 15 15 H 1.07995 * 120.00490 * 203.94572 * 14 13 12 16 16 C 1.40037 * 119.99893 * 23.94115 * 14 13 12 17 17 N 1.30740 * 120.00004 * 16.60264 * 16 14 13 18 18 Si 1.86798 * 119.99974 * 196.59837 * 16 14 13 19 19 H 1.48503 * 109.47325 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46965 * 120.00336 * 18 16 14 21 21 H 1.48501 * 109.47229 * 240.00196 * 18 16 14 22 22 C 1.41168 * 118.00094 * 0.48086 * 13 12 11 23 23 C 1.36587 * 119.13652 * 359.75968 * 22 13 12 24 24 N 1.32067 * 121.26286 * 359.97438 * 23 22 13 25 25 C 1.33538 * 115.19465 * 0.02562 * 7 5 4 26 26 S 1.75846 * 109.86086 * 359.97438 * 25 7 5 27 27 H 1.09003 * 109.47624 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47041 * 299.99738 * 1 2 3 29 29 H 1.09003 * 109.46919 * 59.99802 * 1 2 3 30 30 H 1.08999 * 109.47339 * 239.99988 * 2 1 3 31 31 H 1.09003 * 109.46919 * 120.00198 * 2 1 3 32 32 H 0.96994 * 119.99912 * 355.12367 * 10 8 7 33 33 H 1.08004 * 120.67137 * 0.02701 * 12 11 10 34 34 H 0.96997 * 120.00319 * 180.02562 * 17 16 14 35 35 H 1.08005 * 120.42860 * 179.77752 * 22 13 12 36 36 H 1.08000 * 119.36991 * 180.02562 * 23 22 13 37 37 H 1.08001 * 125.06932 * 180.02562 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.7703 1.8090 0.9810 5 7 3.2791 3.0606 1.0902 6 1 3.1206 3.7505 0.4271 7 6 4.0385 3.2736 2.2187 8 6 4.6701 4.5625 2.5075 9 8 5.3324 4.7026 3.5194 10 7 4.5175 5.5941 1.6538 11 6 5.0321 6.8482 1.9772 12 6 4.7830 7.9277 1.1432 13 6 5.3091 9.1865 1.4921 14 6 5.0806 10.3227 0.6797 15 1 5.7642 11.1581 0.7148 16 6 3.9681 10.3637 -0.1699 17 7 2.9778 9.5291 0.0092 18 14 3.8991 11.6108 -1.5589 19 1 5.1355 12.4333 -1.5476 20 1 3.7901 10.8994 -2.8578 21 1 2.7170 12.4908 -1.3757 22 6 6.0753 9.2801 2.6741 23 6 6.2715 8.1595 3.4299 24 7 5.7585 6.9953 3.0755 25 6 4.1586 2.2200 3.0303 26 16 3.2735 0.8522 2.3686 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.0493 5.4638 0.8144 33 1 4.1940 7.8065 0.2461 34 1 2.2074 9.5572 -0.5795 35 1 6.5004 10.2257 2.9769 36 1 6.8566 8.2269 4.3352 37 1 4.7155 2.2098 3.9556 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532671359.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:52 Heat of formation + Delta-G solvation = 35.448411 kcal Electronic energy + Delta-G solvation = -22865.846634 eV Core-core repulsion = 19348.417595 eV Total energy + Delta-G solvation = -3517.429040 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.93925 -40.48615 -39.30436 -36.82109 -36.27450 -35.65755 -32.59777 -32.41981 -30.73374 -30.36736 -27.96988 -26.70573 -24.32042 -23.87294 -22.91692 -22.46484 -21.21722 -19.91180 -19.60778 -18.57658 -17.75923 -17.25792 -16.96899 -16.78182 -16.10247 -16.02862 -15.90264 -15.59089 -15.48058 -15.21141 -14.77144 -14.60317 -14.38051 -14.21778 -13.65214 -13.21746 -12.95884 -12.94342 -12.73723 -12.67207 -12.31470 -12.13808 -11.92061 -11.68029 -11.50588 -11.43245 -11.20019 -10.81625 -10.35702 -9.97787 -9.70579 -8.99308 -8.69630 -8.45722 -6.58609 -0.21119 0.07079 0.46523 0.72741 0.96072 0.97760 1.41370 1.49943 1.53880 1.56552 1.90936 2.06883 2.18874 2.77885 3.43806 3.58382 3.72109 4.01290 4.11792 4.27835 4.35926 4.48296 4.53050 4.68899 4.71192 4.86328 4.90320 5.00842 5.03003 5.18894 5.21856 5.28725 5.44360 5.53618 5.81304 5.87305 6.03927 6.32454 6.48848 6.60934 6.75070 6.80106 6.98296 7.74436 8.22848 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.014987 B = 0.003220 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.835056 B = 8694.313412 C =10430.686486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.058 3.942 3 N -0.587 5.587 4 C 0.347 3.653 5 N -0.613 5.613 6 H 0.428 0.572 7 C 0.068 3.932 8 C 0.568 3.432 9 O -0.491 6.491 10 N -0.642 5.642 11 C 0.334 3.666 12 C -0.258 4.258 13 C 0.114 3.886 14 C -0.480 4.480 15 H 0.085 0.915 16 C 0.041 3.959 17 N -0.809 5.809 18 Si 0.986 3.014 19 H -0.258 1.258 20 H -0.263 1.263 21 H -0.266 1.266 22 C -0.293 4.293 23 C 0.116 3.884 24 N -0.578 5.578 25 C -0.174 4.174 26 S 0.067 5.933 27 H 0.086 0.914 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.051 0.949 32 H 0.419 0.581 33 H 0.125 0.875 34 H 0.293 0.707 35 H 0.117 0.883 36 H 0.153 0.847 37 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.120 -15.345 -1.869 15.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.072 4.072 3 N -0.322 5.322 4 C -0.039 4.039 5 N -0.241 5.241 6 H 0.270 0.730 7 C -0.047 4.047 8 C 0.351 3.649 9 O -0.362 6.362 10 N -0.289 5.289 11 C 0.108 3.892 12 C -0.284 4.284 13 C 0.105 3.895 14 C -0.510 4.510 15 H 0.103 0.897 16 C -0.177 4.177 17 N -0.434 5.434 18 Si 0.806 3.194 19 H -0.181 1.181 20 H -0.187 1.187 21 H -0.191 1.191 22 C -0.316 4.316 23 C -0.037 4.037 24 N -0.298 5.298 25 C -0.317 4.317 26 S 0.308 5.692 27 H 0.105 0.895 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.112 0.888 31 H 0.069 0.931 32 H 0.256 0.744 33 H 0.142 0.858 34 H 0.104 0.896 35 H 0.135 0.865 36 H 0.170 0.830 37 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -4.383 -17.253 -1.038 17.832 hybrid contribution -0.107 2.626 -1.459 3.006 sum -4.490 -14.627 -2.497 15.503 Atomic orbital electron populations 1.21750 0.93111 1.03031 1.01982 1.22138 0.97158 0.86010 1.01881 1.71763 1.19581 1.18693 1.22148 1.24450 0.95533 0.88802 0.95093 1.41488 1.48344 1.11659 1.22619 0.73049 1.18850 1.00110 0.95475 0.90289 1.17509 0.81045 0.82463 0.83838 1.90956 1.37496 1.81769 1.26007 1.43190 1.55905 1.07372 1.22449 1.18275 0.93935 0.84468 0.92487 1.21528 1.12147 0.91586 1.03147 1.18005 0.88293 0.92819 0.90335 1.19908 1.08857 1.02311 1.19963 0.89673 1.26804 0.93410 0.98244 0.99228 1.69796 1.05398 1.34029 1.34185 0.85096 0.79461 0.77863 0.76980 1.18112 1.18711 1.19122 1.21874 1.11399 0.99619 0.98744 1.21948 0.95977 0.87370 0.98395 1.67309 1.16995 1.27189 1.18327 1.25331 1.06950 0.94047 1.05361 1.85180 1.53676 1.12788 1.17545 0.89473 0.93583 0.92337 0.88834 0.93100 0.74359 0.85761 0.89619 0.86491 0.83007 0.78226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 10.24 71.98 0.74 -1.47 16 2 C 0.06 1.06 7.06 86.38 0.61 1.67 16 3 N -0.59 -14.06 10.65 -348.51 -3.71 -17.77 16 4 C 0.35 8.17 8.33 180.01 1.50 9.67 16 5 N -0.61 -14.74 5.63 -187.87 -1.06 -15.80 16 6 H 0.43 9.43 7.57 -92.71 -0.70 8.72 16 7 C 0.07 1.85 6.70 39.29 0.26 2.11 16 8 C 0.57 20.30 7.72 86.37 0.67 20.97 16 9 O -0.49 -21.11 14.86 -4.47 -0.07 -21.17 16 10 N -0.64 -23.94 5.38 -312.42 -1.68 -25.62 16 11 C 0.33 15.67 7.42 132.80 0.99 16.66 16 12 C -0.26 -12.82 8.63 23.01 0.20 -12.62 16 13 C 0.11 5.88 5.60 -21.11 -0.12 5.76 16 14 C -0.48 -24.09 9.12 23.52 0.21 -23.87 16 15 H 0.09 4.10 7.90 -2.91 -0.02 4.08 16 16 C 0.04 1.89 5.20 85.29 0.44 2.34 16 17 N -0.81 -38.51 10.92 21.84 0.24 -38.27 16 18 Si 0.99 34.98 29.59 68.60 2.03 37.01 16 19 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 20 H -0.26 -8.93 7.11 99.48 0.71 -8.23 16 21 H -0.27 -9.14 7.11 99.48 0.71 -8.43 16 22 C -0.29 -13.99 9.85 22.60 0.22 -13.77 16 23 C 0.12 5.35 11.10 84.27 0.94 6.29 16 24 N -0.58 -28.43 7.85 -194.32 -1.53 -29.96 16 25 C -0.17 -4.07 10.64 66.75 0.71 -3.36 16 26 S 0.07 1.32 21.37 -56.49 -1.21 0.11 16 27 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.05 0.84 6.19 -2.39 -0.01 0.82 16 32 H 0.42 12.73 7.29 -92.71 -0.68 12.05 16 33 H 0.12 6.12 6.20 -2.91 -0.02 6.10 16 34 H 0.29 12.44 8.29 -92.71 -0.77 11.67 16 35 H 0.12 5.09 8.06 -2.91 -0.02 5.07 16 36 H 0.15 5.96 8.06 -2.91 -0.02 5.94 16 37 H 0.20 4.29 7.94 -2.91 -0.02 4.27 16 Total: -1.00 -63.36 335.23 0.16 -63.20 By element: Atomic # 1 Polarization: 38.13 SS G_CDS: -0.23 Total: 37.90 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 7.37 Total: 10.37 kcal Atomic # 7 Polarization: -119.68 SS G_CDS: -7.74 Total: -127.41 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.07 Total: -21.17 kcal Atomic # 14 Polarization: 34.98 SS G_CDS: 2.03 Total: 37.01 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -1.21 Total: 0.11 kcal Total: -63.36 0.16 -63.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532671359.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.649 kcal (2) G-P(sol) polarization free energy of solvation -63.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds