Wall clock time and date at job start Tue Mar 31 2020 12:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35897 * 117.00100 * 2 1 4 4 C 1.38763 * 120.04971 * 359.97269 * 3 2 1 5 5 C 1.38127 * 119.97116 * 180.02562 * 4 3 2 6 6 C 1.38263 * 120.06868 * 359.97438 * 5 4 3 7 7 C 1.38368 * 120.09945 * 359.72910 * 6 5 4 8 8 Cl 1.73594 * 119.98783 * 180.27271 * 7 6 5 9 9 C 1.38289 * 120.02465 * 0.54547 * 7 6 5 10 10 C 1.50695 * 120.03231 * 179.72319 * 9 7 6 11 11 N 1.46498 * 109.47503 * 269.72821 * 10 9 7 12 12 C 1.39076 * 120.00582 * 179.97438 * 11 10 9 13 13 C 1.38749 * 119.65363 * 0.02562 * 12 11 10 14 14 C 1.40783 * 118.66774 * 179.97438 * 13 12 11 15 15 C 1.41550 * 120.98957 * 179.97438 * 14 13 12 16 16 H 1.07990 * 120.00161 * 336.11772 * 15 14 13 17 17 C 1.40024 * 119.99380 * 156.12882 * 15 14 13 18 18 N 1.30744 * 120.00436 * 343.14846 * 17 15 14 19 19 Si 1.86806 * 119.99743 * 163.15033 * 17 15 14 20 20 H 1.48501 * 109.47049 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.46957 * 119.99699 * 19 17 15 22 22 H 1.48499 * 109.47108 * 239.99574 * 19 17 15 23 23 C 1.41188 * 118.01153 * 0.02562 * 14 13 12 24 24 C 1.36552 * 119.14828 * 359.97438 * 23 14 13 25 25 N 1.32093 * 121.26836 * 359.72539 * 24 23 14 26 26 H 1.08996 * 109.47371 * 300.00255 * 1 2 3 27 27 H 1.09006 * 109.46781 * 60.00094 * 1 2 3 28 28 H 1.08998 * 109.47309 * 179.97438 * 1 2 3 29 29 H 1.07998 * 120.01355 * 0.04955 * 4 3 2 30 30 H 1.08001 * 119.96381 * 180.02562 * 5 4 3 31 31 H 1.08000 * 119.94996 * 180.02562 * 6 5 4 32 32 H 1.09002 * 109.47091 * 149.72626 * 10 9 7 33 33 H 1.08999 * 109.47017 * 29.72636 * 10 9 7 34 34 H 0.97008 * 119.99526 * 0.27608 * 11 10 9 35 35 H 1.07998 * 120.66810 * 0.02562 * 13 12 11 36 36 H 0.96998 * 120.00134 * 180.02562 * 18 17 15 37 37 H 1.08001 * 120.42367 * 180.02562 * 23 14 13 38 38 H 1.08006 * 119.36747 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2913 2.3753 -0.0006 5 6 1.9201 3.6051 -0.0011 6 6 3.3009 3.6772 -0.0005 7 6 4.0563 2.5179 0.0062 8 17 5.7896 2.6119 0.0141 9 6 3.4309 1.2845 0.0010 10 6 4.2535 0.0219 0.0021 11 7 4.5206 -0.3882 -1.3787 12 6 5.2675 -1.5337 -1.6319 13 6 5.7558 -2.2832 -0.5713 14 6 6.5089 -3.4392 -0.8514 15 6 7.0310 -4.2397 0.1928 16 1 7.2032 -3.8097 1.1683 17 6 7.3243 -5.5890 -0.0394 18 7 6.8259 -6.1960 -1.0846 19 14 8.4279 -6.5220 1.1445 20 1 8.8595 -5.6148 2.2381 21 1 7.6799 -7.6692 1.7186 22 1 9.6217 -7.0234 0.4175 23 6 6.7287 -3.7756 -2.2049 24 6 6.2080 -2.9763 -3.1819 25 7 5.5006 -1.9013 -2.8837 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 0.2127 2.3200 -0.0002 30 1 1.3326 4.5113 -0.0011 31 1 3.7905 4.6398 -0.0005 32 1 3.7059 -0.7680 0.5162 33 1 5.1973 0.2036 0.5162 34 1 4.1802 0.1418 -2.1165 35 1 5.5614 -1.9863 0.4487 36 1 7.0288 -7.1308 -1.2452 37 1 7.3007 -4.6543 -2.4641 38 1 6.3743 -3.2301 -4.2185 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000545220383.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:29 Heat of formation + Delta-G solvation = 14.378488 kcal Electronic energy + Delta-G solvation = -23249.690806 eV Core-core repulsion = 19697.011649 eV Total energy + Delta-G solvation = -3552.679157 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.50192 -38.33927 -37.83805 -36.28961 -35.22397 -33.82023 -31.52864 -30.49616 -30.20618 -28.10827 -27.41602 -25.79630 -25.31090 -22.38406 -22.03068 -21.01190 -20.53481 -18.29056 -17.58388 -16.72236 -16.25780 -15.95051 -15.53291 -15.17826 -14.94286 -14.79540 -14.28713 -13.94073 -13.60048 -13.39534 -13.27919 -12.99725 -12.67979 -12.35350 -12.21647 -12.05468 -11.94569 -11.65448 -11.33044 -11.26146 -11.10486 -11.02946 -10.81635 -10.64414 -10.20777 -9.74574 -9.34092 -8.93609 -8.81077 -8.42646 -7.86431 -7.79431 -6.75347 -6.33320 -4.46801 0.88179 1.11342 2.00218 2.85321 3.08706 3.14686 3.16109 3.17688 3.33996 3.44297 3.94291 4.32056 4.50382 4.67026 4.77917 4.81690 4.85979 4.96857 5.08221 5.13134 5.32721 5.46576 5.69245 5.90863 5.95047 6.06626 6.07881 6.22302 6.30706 6.37095 6.87669 6.99843 7.05795 7.09488 7.16345 7.36745 7.65957 7.93543 8.14600 8.20690 8.54534 8.81680 8.93077 9.00877 9.88919 10.19480 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016129 B = 0.003350 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.558887 B = 8357.208901 C = 8783.922033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.299 6.299 3 C 0.159 3.841 4 C -0.212 4.212 5 C -0.066 4.066 6 C -0.154 4.154 7 C 0.017 3.983 8 Cl -0.048 7.048 9 C -0.125 4.125 10 C 0.188 3.812 11 N -0.733 5.733 12 C 0.403 3.597 13 C -0.334 4.334 14 C 0.157 3.843 15 C -0.457 4.457 16 H 0.079 0.921 17 C 0.079 3.921 18 N -0.786 5.786 19 Si 0.908 3.092 20 H -0.260 1.260 21 H -0.274 1.274 22 H -0.271 1.271 23 C -0.246 4.246 24 C 0.116 3.884 25 N -0.624 5.624 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.103 0.897 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.388 0.612 35 H 0.096 0.904 36 H 0.280 0.720 37 H 0.122 0.878 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.574 15.305 3.862 18.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.211 6.211 3 C 0.112 3.888 4 C -0.230 4.230 5 C -0.084 4.084 6 C -0.173 4.173 7 C -0.010 4.010 8 Cl -0.018 7.018 9 C -0.127 4.127 10 C 0.063 3.937 11 N -0.369 5.369 12 C 0.172 3.828 13 C -0.361 4.361 14 C 0.149 3.851 15 C -0.489 4.489 16 H 0.097 0.903 17 C -0.140 4.140 18 N -0.411 5.411 19 Si 0.732 3.268 20 H -0.183 1.183 21 H -0.200 1.200 22 H -0.197 1.197 23 C -0.271 4.271 24 C -0.033 4.033 25 N -0.347 5.347 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.121 0.879 29 H 0.151 0.849 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.221 0.779 35 H 0.114 0.886 36 H 0.091 0.909 37 H 0.140 0.860 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.673 15.344 3.258 18.973 hybrid contribution 0.469 -0.696 0.904 1.234 sum -10.204 14.648 4.162 18.331 Atomic orbital electron populations 1.23123 0.78180 1.04433 1.01119 1.86232 1.21358 1.25833 1.87701 1.18671 0.91080 0.84769 0.94259 1.21314 1.00398 0.92149 1.09184 1.20858 0.93696 0.97311 0.96549 1.20940 0.93737 0.97283 1.05383 1.20631 0.85629 0.93606 1.01144 1.98406 1.08609 1.98380 1.96444 1.19167 0.91134 0.95049 1.07302 1.19783 0.97262 0.91165 0.85513 1.43940 1.60615 1.27510 1.04866 1.17875 0.89248 0.85820 0.89810 1.21127 1.14316 1.04228 0.96383 1.17593 0.85663 0.89148 0.92742 1.19602 1.37358 0.93880 0.98022 0.90294 1.25944 0.94166 0.98184 0.95679 1.69820 1.33877 1.11677 1.25725 0.86271 0.80202 0.79392 0.80908 1.18336 1.19970 1.19655 1.21750 1.08646 1.03428 0.93267 1.21334 0.94041 0.90273 0.97701 1.66727 1.26631 1.21678 1.19684 0.92619 0.92559 0.87867 0.84862 0.84893 0.84778 0.91250 0.91422 0.77858 0.88572 0.90897 0.86050 0.86585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.30 -4.04 9.54 -19.42 -0.19 -4.23 16 3 C 0.16 2.07 6.66 -39.22 -0.26 1.80 16 4 C -0.21 -2.10 9.04 -39.43 -0.36 -2.45 16 5 C -0.07 -0.59 10.04 -39.61 -0.40 -0.98 16 6 C -0.15 -1.60 9.83 -39.52 -0.39 -1.99 16 7 C 0.02 0.23 6.31 -39.51 -0.25 -0.02 16 8 Cl -0.05 -0.66 27.29 -51.86 -1.42 -2.07 16 9 C -0.12 -1.80 5.26 -104.44 -0.55 -2.35 16 10 C 0.19 3.29 4.40 -5.20 -0.02 3.27 16 11 N -0.73 -14.80 5.72 -61.66 -0.35 -15.15 16 12 C 0.40 9.90 7.65 -154.98 -1.19 8.71 16 13 C -0.33 -8.67 9.12 -38.43 -0.35 -9.02 16 14 C 0.16 4.36 5.60 -106.55 -0.60 3.76 16 15 C -0.46 -12.42 9.12 -37.65 -0.34 -12.76 16 16 H 0.08 2.07 7.90 -52.49 -0.41 1.65 16 17 C 0.08 2.02 5.20 -17.35 -0.09 1.93 16 18 N -0.79 -20.51 10.92 55.55 0.61 -19.91 16 19 Si 0.91 18.78 29.59 -169.99 -5.03 13.75 16 20 H -0.26 -5.33 7.11 56.52 0.40 -4.92 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 23 C -0.25 -6.67 8.74 -39.07 -0.34 -7.01 16 24 C 0.12 2.95 11.10 -18.05 -0.20 2.75 16 25 N -0.62 -15.93 10.37 -12.82 -0.13 -16.06 16 26 H 0.06 0.37 7.66 -51.93 -0.40 -0.02 16 27 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 28 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.13 0.97 6.30 -52.49 -0.33 0.64 16 30 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 31 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 32 H 0.07 1.29 7.32 -51.93 -0.38 0.91 16 33 H 0.07 1.22 6.68 -51.93 -0.35 0.87 16 34 H 0.39 7.54 8.59 -40.82 -0.35 7.19 16 35 H 0.10 2.37 6.71 -52.49 -0.35 2.02 16 36 H 0.28 6.59 8.29 -40.82 -0.34 6.26 16 37 H 0.12 3.33 6.20 -52.49 -0.33 3.00 16 38 H 0.12 2.60 8.06 -52.48 -0.42 2.18 16 LS Contribution 338.27 15.07 5.10 5.10 Total: -1.00 -30.93 338.27 -9.88 -40.80 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -4.12 Total: 10.94 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -4.34 Total: -13.16 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: 0.12 Total: -51.12 kcal Atomic # 8 Polarization: -4.04 SS G_CDS: -0.19 Total: -4.23 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.42 Total: -2.07 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.93 -9.88 -40.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545220383.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.181 kcal (2) G-P(sol) polarization free energy of solvation -30.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds