Wall clock time and date at job start Tue Mar 31 2020 12:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35897 * 117.00100 * 2 1 4 4 C 1.38763 * 120.04971 * 359.97269 * 3 2 1 5 5 C 1.38127 * 119.97116 * 180.02562 * 4 3 2 6 6 C 1.38263 * 120.06868 * 359.97438 * 5 4 3 7 7 C 1.38368 * 120.09945 * 359.72910 * 6 5 4 8 8 Cl 1.73594 * 119.98783 * 180.27271 * 7 6 5 9 9 C 1.38289 * 120.02465 * 0.54547 * 7 6 5 10 10 C 1.50695 * 120.03231 * 179.72319 * 9 7 6 11 11 N 1.46498 * 109.47503 * 269.72821 * 10 9 7 12 12 C 1.39076 * 120.00582 * 179.97438 * 11 10 9 13 13 C 1.38749 * 119.65363 * 0.02562 * 12 11 10 14 14 C 1.40783 * 118.66774 * 179.97438 * 13 12 11 15 15 C 1.41550 * 120.98957 * 179.97438 * 14 13 12 16 16 H 1.07990 * 120.00161 * 336.11772 * 15 14 13 17 17 C 1.40024 * 119.99380 * 156.12882 * 15 14 13 18 18 N 1.30744 * 120.00436 * 343.14846 * 17 15 14 19 19 Si 1.86806 * 119.99743 * 163.15033 * 17 15 14 20 20 H 1.48501 * 109.47049 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.46957 * 119.99699 * 19 17 15 22 22 H 1.48499 * 109.47108 * 239.99574 * 19 17 15 23 23 C 1.41188 * 118.01153 * 0.02562 * 14 13 12 24 24 C 1.36552 * 119.14828 * 359.97438 * 23 14 13 25 25 N 1.32093 * 121.26836 * 359.72539 * 24 23 14 26 26 H 1.08996 * 109.47371 * 300.00255 * 1 2 3 27 27 H 1.09006 * 109.46781 * 60.00094 * 1 2 3 28 28 H 1.08998 * 109.47309 * 179.97438 * 1 2 3 29 29 H 1.07998 * 120.01355 * 0.04955 * 4 3 2 30 30 H 1.08001 * 119.96381 * 180.02562 * 5 4 3 31 31 H 1.08000 * 119.94996 * 180.02562 * 6 5 4 32 32 H 1.09002 * 109.47091 * 149.72626 * 10 9 7 33 33 H 1.08999 * 109.47017 * 29.72636 * 10 9 7 34 34 H 0.97008 * 119.99526 * 0.27608 * 11 10 9 35 35 H 1.07998 * 120.66810 * 0.02562 * 13 12 11 36 36 H 0.96998 * 120.00134 * 180.02562 * 18 17 15 37 37 H 1.08001 * 120.42367 * 180.02562 * 23 14 13 38 38 H 1.08006 * 119.36747 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2913 2.3753 -0.0006 5 6 1.9201 3.6051 -0.0011 6 6 3.3009 3.6772 -0.0005 7 6 4.0563 2.5179 0.0062 8 17 5.7896 2.6119 0.0141 9 6 3.4309 1.2845 0.0010 10 6 4.2535 0.0219 0.0021 11 7 4.5206 -0.3882 -1.3787 12 6 5.2675 -1.5337 -1.6319 13 6 5.7558 -2.2832 -0.5713 14 6 6.5089 -3.4392 -0.8514 15 6 7.0310 -4.2397 0.1928 16 1 7.2032 -3.8097 1.1683 17 6 7.3243 -5.5890 -0.0394 18 7 6.8259 -6.1960 -1.0846 19 14 8.4279 -6.5220 1.1445 20 1 8.8595 -5.6148 2.2381 21 1 7.6799 -7.6692 1.7186 22 1 9.6217 -7.0234 0.4175 23 6 6.7287 -3.7756 -2.2049 24 6 6.2080 -2.9763 -3.1819 25 7 5.5006 -1.9013 -2.8837 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 0.2127 2.3200 -0.0002 30 1 1.3326 4.5113 -0.0011 31 1 3.7905 4.6398 -0.0005 32 1 3.7059 -0.7680 0.5162 33 1 5.1973 0.2036 0.5162 34 1 4.1802 0.1418 -2.1165 35 1 5.5614 -1.9863 0.4487 36 1 7.0288 -7.1308 -1.2452 37 1 7.3007 -4.6543 -2.4641 38 1 6.3743 -3.2301 -4.2185 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000545220383.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:29 Heat of formation + Delta-G solvation = -3.508053 kcal Electronic energy + Delta-G solvation = -23250.466425 eV Core-core repulsion = 19697.011649 eV Total energy + Delta-G solvation = -3553.454776 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.42053 -40.24195 -38.79026 -37.26444 -36.85483 -35.69767 -32.82844 -32.48056 -31.05192 -29.75471 -28.23739 -27.81704 -26.70722 -23.52004 -23.23390 -22.80964 -22.16807 -19.52355 -19.14863 -17.88343 -17.63936 -17.08388 -16.83329 -16.48747 -16.44371 -16.04201 -15.81022 -15.32805 -15.15486 -14.86164 -14.71782 -14.29804 -14.11722 -13.87870 -13.70782 -13.14001 -13.04200 -12.85383 -12.79124 -12.74042 -12.67757 -12.22181 -11.97731 -11.83702 -11.74998 -11.67750 -11.24788 -10.64058 -9.92251 -9.88229 -9.82673 -9.30009 -8.69177 -8.21922 -6.54252 -0.01397 0.25141 0.98426 1.03927 1.20190 1.38940 1.54619 1.60245 2.20091 2.36136 2.38291 2.81447 2.83023 3.53378 3.78763 3.88122 3.93587 4.11180 4.23728 4.33837 4.37382 4.39146 4.48318 4.57904 4.71735 4.80238 4.91577 5.00221 5.05874 5.14756 5.18295 5.21187 5.29407 5.32236 5.56425 5.63831 5.91909 6.12720 6.34099 6.37696 6.55242 6.87719 6.90406 7.05655 7.89212 8.28647 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016129 B = 0.003350 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.558887 B = 8357.208901 C = 8783.922033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.334 6.334 3 C 0.147 3.853 4 C -0.203 4.203 5 C -0.049 4.049 6 C -0.152 4.152 7 C 0.006 3.994 8 Cl -0.066 7.066 9 C -0.153 4.153 10 C 0.195 3.805 11 N -0.719 5.719 12 C 0.404 3.596 13 C -0.355 4.355 14 C 0.130 3.870 15 C -0.490 4.490 16 H 0.077 0.923 17 C 0.040 3.960 18 N -0.812 5.812 19 Si 0.988 3.012 20 H -0.259 1.259 21 H -0.262 1.262 22 H -0.261 1.261 23 C -0.270 4.270 24 C 0.117 3.883 25 N -0.634 5.634 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.106 0.894 29 H 0.165 0.835 30 H 0.176 0.824 31 H 0.157 0.843 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.393 0.607 35 H 0.097 0.903 36 H 0.292 0.708 37 H 0.113 0.887 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.018 16.793 4.349 21.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.100 3.900 4 C -0.221 4.221 5 C -0.067 4.067 6 C -0.171 4.171 7 C -0.021 4.021 8 Cl -0.037 7.037 9 C -0.155 4.155 10 C 0.071 3.929 11 N -0.354 5.354 12 C 0.172 3.828 13 C -0.382 4.382 14 C 0.122 3.878 15 C -0.521 4.521 16 H 0.095 0.905 17 C -0.178 4.178 18 N -0.437 5.437 19 Si 0.807 3.193 20 H -0.182 1.182 21 H -0.187 1.187 22 H -0.185 1.185 23 C -0.295 4.295 24 C -0.032 4.032 25 N -0.359 5.359 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.124 0.876 29 H 0.183 0.817 30 H 0.194 0.806 31 H 0.174 0.826 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.227 0.773 35 H 0.115 0.885 36 H 0.103 0.897 37 H 0.130 0.870 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.156 16.872 3.746 21.130 hybrid contribution 0.759 -1.077 0.735 1.509 sum -11.397 15.794 4.481 19.986 Atomic orbital electron populations 1.23402 0.75937 1.05397 1.02922 1.86181 1.23886 1.26790 1.87920 1.18854 0.90689 0.85772 0.94716 1.21689 1.01838 0.91214 1.07404 1.21380 0.93198 0.98505 0.93627 1.21285 0.94508 0.97086 1.04219 1.20778 0.84881 0.94163 1.02301 1.98396 1.10309 1.98389 1.96622 1.18953 0.91840 0.93863 1.10860 1.19668 0.97158 0.92556 0.83515 1.44036 1.59029 1.25909 1.06407 1.18119 0.88812 0.86573 0.89331 1.21202 1.15367 1.04745 0.96934 1.17991 0.86239 0.90053 0.93547 1.19873 1.38957 0.95239 0.98012 0.90527 1.26856 0.94911 0.98380 0.97607 1.69854 1.34172 1.12626 1.27081 0.85089 0.78057 0.77829 0.78289 1.18222 1.18686 1.18497 1.21721 1.10234 1.04016 0.93551 1.21752 0.92967 0.89713 0.98804 1.66883 1.27188 1.21907 1.19877 0.90420 0.90965 0.87567 0.81746 0.80619 0.82558 0.93085 0.92461 0.77294 0.88494 0.89734 0.86950 0.83761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -8.93 9.54 -92.39 -0.88 -9.81 16 3 C 0.15 3.64 6.66 22.50 0.15 3.79 16 4 C -0.20 -3.31 9.04 22.37 0.20 -3.11 16 5 C -0.05 -0.66 10.04 22.25 0.22 -0.44 16 6 C -0.15 -2.72 9.83 22.31 0.22 -2.50 16 7 C 0.01 0.15 6.31 22.31 0.14 0.30 16 8 Cl -0.07 -1.85 27.29 -2.72 -0.07 -1.92 16 9 C -0.15 -4.45 5.26 -19.75 -0.10 -4.55 16 10 C 0.20 7.17 4.40 85.63 0.38 7.54 16 11 N -0.72 -29.97 5.72 -348.99 -2.00 -31.96 16 12 C 0.40 20.50 7.65 132.91 1.02 21.52 16 13 C -0.36 -19.39 9.12 23.01 0.21 -19.18 16 14 C 0.13 7.53 5.60 -21.12 -0.12 7.41 16 15 C -0.49 -27.58 9.12 23.52 0.21 -27.37 16 16 H 0.08 4.18 7.90 -2.92 -0.02 4.16 16 17 C 0.04 2.03 5.20 85.29 0.44 2.48 16 18 N -0.81 -43.00 10.92 21.84 0.24 -42.76 16 19 Si 0.99 38.51 29.59 68.60 2.03 40.54 16 20 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 21 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 22 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 23 C -0.27 -15.16 8.74 22.60 0.20 -14.96 16 24 C 0.12 6.08 11.10 84.26 0.94 7.01 16 25 N -0.63 -32.97 10.37 -194.47 -2.02 -34.99 16 26 H 0.08 0.84 7.66 -2.39 -0.02 0.82 16 27 H 0.07 0.87 7.66 -2.38 -0.02 0.85 16 28 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.17 1.61 6.30 -2.91 -0.02 1.59 16 30 H 0.18 0.93 8.06 -2.91 -0.02 0.90 16 31 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 32 H 0.05 2.03 7.32 -2.39 -0.02 2.02 16 33 H 0.06 2.19 6.68 -2.39 -0.02 2.18 16 34 H 0.39 15.55 8.59 -92.70 -0.80 14.75 16 35 H 0.10 5.10 6.71 -2.91 -0.02 5.08 16 36 H 0.29 13.74 8.29 -92.71 -0.77 12.97 16 37 H 0.11 6.39 6.20 -2.91 -0.02 6.37 16 38 H 0.15 6.45 8.06 -2.91 -0.02 6.43 16 Total: -1.00 -69.94 338.27 2.84 -67.11 By element: Atomic # 1 Polarization: 34.17 SS G_CDS: 0.32 Total: 34.49 kcal Atomic # 6 Polarization: -25.90 SS G_CDS: 5.22 Total: -20.68 kcal Atomic # 7 Polarization: -105.94 SS G_CDS: -3.77 Total: -109.72 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: -0.88 Total: -9.81 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 2.03 Total: 40.54 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -0.07 Total: -1.92 kcal Total: -69.94 2.84 -67.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545220383.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.599 kcal (2) G-P(sol) polarization free energy of solvation -69.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds