Wall clock time and date at job start Tue Mar 31 2020 11:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99662 * 2 1 4 4 N 1.46497 * 109.47266 * 124.99794 * 3 2 1 5 5 C 1.46502 * 119.99824 * 262.69538 * 4 3 2 6 6 C 1.50692 * 109.46879 * 269.99483 * 5 4 3 7 7 H 1.08003 * 120.00515 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99765 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00374 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99909 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47506 * 60.00207 * 10 8 6 12 12 H 1.48497 * 109.47323 * 180.02562 * 10 8 6 13 13 H 1.48510 * 109.47158 * 300.00006 * 10 8 6 14 14 C 1.34779 * 119.99799 * 82.68914 * 4 3 2 15 15 O 1.21644 * 119.99888 * 182.39453 * 14 4 3 16 16 C 1.47049 * 120.00186 * 2.40001 * 14 4 3 17 17 C 1.35871 * 125.43239 * 168.27889 * 16 14 4 18 18 C 1.41589 * 107.73190 * 180.02562 * 17 16 14 19 19 C 1.40112 * 133.35792 * 180.28033 * 18 17 16 20 20 C 1.36532 * 119.81920 * 180.22745 * 19 18 17 21 21 Cl 1.73597 * 119.71052 * 179.73173 * 20 19 18 22 22 C 1.39040 * 120.58371 * 359.45717 * 20 19 18 23 23 C 1.37662 * 120.64017 * 0.26994 * 22 20 19 24 24 C 1.39223 * 119.82409 * 0.02562 * 23 22 20 25 25 N 1.37524 * 133.16527 * 179.97438 * 24 23 22 26 26 H 0.97003 * 125.60499 * 0.03958 * 25 24 23 27 27 H 1.08003 * 119.99859 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.00403 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.00109 * 180.02562 * 2 1 3 30 30 H 1.09005 * 109.47242 * 4.99367 * 3 2 1 31 31 H 1.09003 * 109.46875 * 244.99917 * 3 2 1 32 32 H 1.08997 * 109.47087 * 29.99860 * 5 4 3 33 33 H 1.09004 * 109.46457 * 149.99753 * 5 4 3 34 34 H 0.96994 * 120.00227 * 180.02562 * 9 8 6 35 35 H 1.08003 * 126.13425 * 0.02562 * 17 16 14 36 36 H 1.07999 * 120.09261 * 359.95771 * 19 18 17 37 37 H 1.08006 * 119.68166 * 180.29605 * 22 20 19 38 38 H 1.08004 * 120.08540 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3321 1.1314 5 6 2.6153 2.0081 2.3749 6 6 3.0447 3.4511 2.3128 7 1 3.5487 3.8274 1.4347 8 6 2.7933 4.2916 3.3765 9 7 2.1791 3.8337 4.4455 10 14 3.3250 6.0807 3.2993 11 1 2.6586 6.7461 2.1511 12 1 2.9416 6.7659 4.5597 13 1 4.7982 6.1523 3.1259 14 6 4.1975 0.7348 1.0284 15 8 4.9524 0.7194 1.9821 16 6 4.5985 0.1020 -0.2370 17 6 5.8511 -0.3282 -0.5403 18 6 5.8154 -0.8727 -1.8469 19 6 6.7843 -1.4604 -2.6708 20 6 6.4404 -1.8983 -3.9174 21 17 7.6446 -2.6198 -4.9386 22 6 5.1327 -1.7768 -4.3741 23 6 4.1624 -1.2079 -3.5804 24 6 4.4904 -0.7484 -2.3078 25 7 3.7617 -0.1495 -1.3070 26 1 2.8157 0.0612 -1.3459 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5401 0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3585 2.1317 0.0895 31 1 2.6213 1.4027 -0.9314 32 1 1.5341 1.9558 2.5023 33 1 3.1045 1.5193 3.2174 34 1 2.0019 4.4251 5.1937 35 1 6.7184 -0.2659 0.1002 36 1 7.8015 -1.5628 -2.3225 37 1 4.8757 -2.1325 -5.3610 38 1 3.1496 -1.1176 -3.9444 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590409123.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:18 Heat of formation + Delta-G solvation = 63.277031 kcal Electronic energy + Delta-G solvation = -23522.101288 eV Core-core repulsion = 19971.542530 eV Total energy + Delta-G solvation = -3550.558757 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.79350 -39.12844 -37.37137 -36.30365 -35.85415 -33.46285 -32.30882 -32.25289 -29.71060 -29.13469 -27.66762 -25.96713 -24.32727 -22.53830 -22.10454 -20.88466 -20.48320 -19.24198 -17.74704 -17.20730 -16.61929 -16.38333 -15.44979 -15.24125 -15.11031 -14.62170 -14.44610 -14.20679 -14.03590 -13.89086 -13.27929 -13.01618 -12.88001 -12.65393 -12.47060 -12.25872 -11.93744 -11.49436 -11.44649 -11.29036 -11.03661 -10.92553 -10.89701 -10.69068 -10.30041 -10.02538 -9.80829 -9.56484 -9.40620 -8.52383 -8.27637 -8.03265 -7.78825 -6.13915 -4.19885 0.68659 1.28491 2.01975 2.05897 2.21264 2.97091 3.26631 3.31742 3.34202 3.55533 3.64323 3.82317 4.36603 4.48837 4.62790 4.78767 4.89116 5.02362 5.06623 5.16735 5.18667 5.20646 5.33489 5.39970 5.67759 5.75840 5.83042 5.88148 6.04942 6.15362 6.35391 6.44515 6.54657 6.58143 6.77968 6.93783 7.24968 7.29354 7.36313 7.81099 8.08384 8.11234 8.67232 8.86161 9.45708 10.94135 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.019329 B = 0.003118 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.240653 B = 8976.882714 C = 9757.015338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.207 4.207 3 C 0.117 3.883 4 N -0.585 5.585 5 C 0.247 3.753 6 C -0.534 4.534 7 H 0.058 0.942 8 C 0.064 3.936 9 N -0.892 5.892 10 Si 0.900 3.100 11 H -0.277 1.277 12 H -0.285 1.285 13 H -0.275 1.275 14 C 0.569 3.431 15 O -0.515 6.515 16 C 0.045 3.955 17 C -0.124 4.124 18 C -0.104 4.104 19 C -0.052 4.052 20 C -0.064 4.064 21 Cl -0.081 7.081 22 C -0.091 4.091 23 C -0.114 4.114 24 C 0.100 3.900 25 N -0.581 5.581 26 H 0.429 0.571 27 H 0.101 0.899 28 H 0.105 0.895 29 H 0.110 0.890 30 H 0.102 0.898 31 H 0.077 0.923 32 H 0.036 0.964 33 H 0.049 0.951 34 H 0.265 0.735 35 H 0.158 0.842 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.817 -11.487 -17.806 21.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.226 4.226 3 C -0.008 4.008 4 N -0.315 5.315 5 C 0.129 3.871 6 C -0.572 4.572 7 H 0.077 0.923 8 C -0.139 4.139 9 N -0.531 5.531 10 Si 0.727 3.273 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.200 1.200 14 C 0.355 3.645 15 O -0.390 6.390 16 C -0.065 4.065 17 C -0.150 4.150 18 C -0.109 4.109 19 C -0.071 4.071 20 C -0.091 4.091 21 Cl -0.052 7.052 22 C -0.111 4.111 23 C -0.134 4.134 24 C -0.011 4.011 25 N -0.196 5.196 26 H 0.280 0.720 27 H 0.119 0.881 28 H 0.123 0.877 29 H 0.128 0.872 30 H 0.121 0.879 31 H 0.094 0.906 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.175 0.825 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.053 -11.390 -17.075 20.552 hybrid contribution -0.164 1.009 -0.126 1.030 sum 0.888 -10.381 -17.201 20.111 Atomic orbital electron populations 1.23972 0.95565 1.02435 0.97071 1.23577 0.97077 0.98881 1.03076 1.21006 0.93599 0.96119 0.90075 1.48210 1.13803 1.53074 1.16434 1.19401 0.96167 0.91759 0.79768 1.21368 1.38976 0.94276 1.02617 0.92348 1.24926 0.94887 0.99081 0.94990 1.69915 1.41133 1.36200 1.05834 0.86532 0.79345 0.84111 0.77307 1.20216 1.21094 1.20026 1.17183 0.82561 0.79252 0.85525 1.90836 1.51460 1.59421 1.37272 1.20750 0.91203 1.05009 0.89564 1.20858 0.96630 1.02465 0.95010 1.18050 0.92673 1.04649 0.95521 1.20221 0.99285 0.96204 0.91386 1.20180 0.90482 1.05324 0.93149 1.98350 1.56347 1.82391 1.68141 1.20635 0.90594 0.99874 0.99984 1.19963 0.99892 1.02274 0.91292 1.18513 0.91852 0.99458 0.91323 1.43742 1.12228 1.51385 1.12231 0.72014 0.88114 0.87681 0.87183 0.87934 0.90552 0.94605 0.93342 0.92497 0.82480 0.84792 0.84758 0.85203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 14.32 29.01 0.42 -1.21 16 2 C -0.21 -2.58 7.90 -36.03 -0.28 -2.87 16 3 C 0.12 1.76 5.40 -5.19 -0.03 1.73 16 4 N -0.58 -11.89 2.46 -177.85 -0.44 -12.33 16 5 C 0.25 6.20 5.15 -5.20 -0.03 6.18 16 6 C -0.53 -14.61 9.39 -34.44 -0.32 -14.94 16 7 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -25.77 13.29 55.43 0.74 -25.03 16 10 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 13 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 14 C 0.57 11.85 7.57 -12.69 -0.10 11.75 16 15 O -0.51 -12.74 16.43 5.24 0.09 -12.65 16 16 C 0.05 0.75 6.56 -82.30 -0.54 0.21 16 17 C -0.12 -1.91 10.55 -39.15 -0.41 -2.33 16 18 C -0.10 -1.41 6.16 -106.93 -0.66 -2.07 16 19 C -0.05 -0.61 9.82 -39.49 -0.39 -1.00 16 20 C -0.06 -0.69 6.28 -39.90 -0.25 -0.94 16 21 Cl -0.08 -0.80 28.93 -51.86 -1.50 -2.30 16 22 C -0.09 -0.88 9.79 -39.49 -0.39 -1.26 16 23 C -0.11 -1.14 10.07 -39.43 -0.40 -1.54 16 24 C 0.10 1.26 7.25 -83.96 -0.61 0.66 16 25 N -0.58 -7.78 4.51 -7.35 -0.03 -7.81 16 26 H 0.43 5.01 3.45 -40.82 -0.14 4.87 16 27 H 0.10 0.90 8.06 -52.48 -0.42 0.47 16 28 H 0.10 1.07 7.84 -52.49 -0.41 0.66 16 29 H 0.11 1.37 7.35 -52.49 -0.39 0.99 16 30 H 0.10 1.55 7.67 -51.93 -0.40 1.15 16 31 H 0.08 1.02 5.13 -51.93 -0.27 0.76 16 32 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.05 1.38 7.39 -51.93 -0.38 0.99 16 34 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.16 2.33 8.06 -52.48 -0.42 1.91 16 36 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 38 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 LS Contribution 341.45 15.07 5.15 5.15 Total: -1.00 -31.39 341.45 -9.17 -40.57 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -4.06 Total: 4.06 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -4.08 Total: -5.95 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: 0.27 Total: -45.18 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.09 Total: -12.65 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.50 Total: -2.30 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.39 -9.17 -40.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590409123.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.843 kcal (2) G-P(sol) polarization free energy of solvation -31.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds