Wall clock time and date at job start Tue Mar 31 2020 11:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99662 * 2 1 4 4 N 1.46497 * 109.47266 * 124.99794 * 3 2 1 5 5 C 1.46502 * 119.99824 * 262.69538 * 4 3 2 6 6 C 1.50692 * 109.46879 * 269.99483 * 5 4 3 7 7 H 1.08003 * 120.00515 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99765 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00374 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99909 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47506 * 60.00207 * 10 8 6 12 12 H 1.48497 * 109.47323 * 180.02562 * 10 8 6 13 13 H 1.48510 * 109.47158 * 300.00006 * 10 8 6 14 14 C 1.34779 * 119.99799 * 82.68914 * 4 3 2 15 15 O 1.21644 * 119.99888 * 182.39453 * 14 4 3 16 16 C 1.47049 * 120.00186 * 2.40001 * 14 4 3 17 17 C 1.35871 * 125.43239 * 168.27889 * 16 14 4 18 18 C 1.41589 * 107.73190 * 180.02562 * 17 16 14 19 19 C 1.40112 * 133.35792 * 180.28033 * 18 17 16 20 20 C 1.36532 * 119.81920 * 180.22745 * 19 18 17 21 21 Cl 1.73597 * 119.71052 * 179.73173 * 20 19 18 22 22 C 1.39040 * 120.58371 * 359.45717 * 20 19 18 23 23 C 1.37662 * 120.64017 * 0.26994 * 22 20 19 24 24 C 1.39223 * 119.82409 * 0.02562 * 23 22 20 25 25 N 1.37524 * 133.16527 * 179.97438 * 24 23 22 26 26 H 0.97003 * 125.60499 * 0.03958 * 25 24 23 27 27 H 1.08003 * 119.99859 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.00403 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.00109 * 180.02562 * 2 1 3 30 30 H 1.09005 * 109.47242 * 4.99367 * 3 2 1 31 31 H 1.09003 * 109.46875 * 244.99917 * 3 2 1 32 32 H 1.08997 * 109.47087 * 29.99860 * 5 4 3 33 33 H 1.09004 * 109.46457 * 149.99753 * 5 4 3 34 34 H 0.96994 * 120.00227 * 180.02562 * 9 8 6 35 35 H 1.08003 * 126.13425 * 0.02562 * 17 16 14 36 36 H 1.07999 * 120.09261 * 359.95771 * 19 18 17 37 37 H 1.08006 * 119.68166 * 180.29605 * 22 20 19 38 38 H 1.08004 * 120.08540 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3321 1.1314 5 6 2.6153 2.0081 2.3749 6 6 3.0447 3.4511 2.3128 7 1 3.5487 3.8274 1.4347 8 6 2.7933 4.2916 3.3765 9 7 2.1791 3.8337 4.4455 10 14 3.3250 6.0807 3.2993 11 1 2.6586 6.7461 2.1511 12 1 2.9416 6.7659 4.5597 13 1 4.7982 6.1523 3.1259 14 6 4.1975 0.7348 1.0284 15 8 4.9524 0.7194 1.9821 16 6 4.5985 0.1020 -0.2370 17 6 5.8511 -0.3282 -0.5403 18 6 5.8154 -0.8727 -1.8469 19 6 6.7843 -1.4604 -2.6708 20 6 6.4404 -1.8983 -3.9174 21 17 7.6446 -2.6198 -4.9386 22 6 5.1327 -1.7768 -4.3741 23 6 4.1624 -1.2079 -3.5804 24 6 4.4904 -0.7484 -2.3078 25 7 3.7617 -0.1495 -1.3070 26 1 2.8157 0.0612 -1.3459 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5401 0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3585 2.1317 0.0895 31 1 2.6213 1.4027 -0.9314 32 1 1.5341 1.9558 2.5023 33 1 3.1045 1.5193 3.2174 34 1 2.0019 4.4251 5.1937 35 1 6.7184 -0.2659 0.1002 36 1 7.8015 -1.5628 -2.3225 37 1 4.8757 -2.1325 -5.3610 38 1 3.1496 -1.1176 -3.9444 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590409123.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:17 Heat of formation + Delta-G solvation = 46.154415 kcal Electronic energy + Delta-G solvation = -23522.843780 eV Core-core repulsion = 19971.542530 eV Total energy + Delta-G solvation = -3551.301250 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.90038 -40.57148 -38.37253 -37.67360 -36.79477 -35.23405 -33.89499 -33.26724 -30.93689 -30.20282 -29.30590 -27.28236 -25.92308 -23.95468 -23.12067 -22.07481 -21.59899 -20.44894 -18.87060 -18.72882 -18.40681 -17.49252 -17.01463 -16.57297 -16.32467 -16.10530 -15.60981 -15.38057 -15.28022 -14.85924 -14.58567 -14.34433 -14.07944 -13.98214 -13.76766 -13.46701 -13.31852 -13.13271 -12.92850 -12.62142 -12.40173 -12.30880 -12.25384 -11.82204 -11.75683 -11.73232 -11.10901 -11.02283 -10.68109 -10.55774 -9.72907 -9.22928 -8.87058 -8.26080 -6.41290 -0.34345 0.37879 0.99208 1.08564 1.22264 1.36556 1.40608 1.47927 1.86414 2.09313 2.34596 2.38909 2.70893 3.04193 3.38324 3.60305 3.75262 3.96135 3.98375 4.07541 4.13207 4.28552 4.32710 4.49293 4.60758 4.80244 4.85922 4.89671 4.95436 5.11978 5.18093 5.28195 5.34295 5.42962 5.52673 5.53490 5.64006 5.74591 5.84948 5.98948 6.31885 6.48029 6.66215 7.08594 7.30720 8.81090 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.019329 B = 0.003118 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.240653 B = 8976.882714 C = 9757.015338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.226 4.226 3 C 0.114 3.886 4 N -0.589 5.589 5 C 0.264 3.736 6 C -0.549 4.549 7 H 0.054 0.946 8 C 0.013 3.987 9 N -0.925 5.925 10 Si 0.966 3.034 11 H -0.260 1.260 12 H -0.278 1.278 13 H -0.279 1.279 14 C 0.564 3.436 15 O -0.573 6.573 16 C 0.020 3.980 17 C -0.121 4.121 18 C -0.125 4.125 19 C -0.058 4.058 20 C -0.066 4.066 21 Cl -0.070 7.070 22 C -0.078 4.078 23 C -0.110 4.110 24 C 0.100 3.900 25 N -0.570 5.570 26 H 0.436 0.564 27 H 0.126 0.874 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.031 0.969 33 H 0.003 0.997 34 H 0.269 0.731 35 H 0.151 0.849 36 H 0.142 0.858 37 H 0.166 0.834 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.127 -11.920 -21.267 24.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.246 4.246 3 C -0.008 4.008 4 N -0.318 5.318 5 C 0.144 3.856 6 C -0.588 4.588 7 H 0.072 0.928 8 C -0.187 4.187 9 N -0.564 5.564 10 Si 0.791 3.209 11 H -0.184 1.184 12 H -0.203 1.203 13 H -0.204 1.204 14 C 0.353 3.647 15 O -0.452 6.452 16 C -0.090 4.090 17 C -0.148 4.148 18 C -0.130 4.130 19 C -0.078 4.078 20 C -0.094 4.094 21 Cl -0.042 7.042 22 C -0.098 4.098 23 C -0.130 4.130 24 C -0.011 4.011 25 N -0.185 5.185 26 H 0.289 0.711 27 H 0.144 0.856 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.118 0.882 31 H 0.112 0.888 32 H 0.049 0.951 33 H 0.021 0.979 34 H 0.078 0.922 35 H 0.169 0.831 36 H 0.160 0.840 37 H 0.183 0.817 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 0.063 -11.835 -20.596 23.754 hybrid contribution 0.148 1.015 0.805 1.304 sum 0.211 -10.820 -19.791 22.556 Atomic orbital electron populations 1.24255 0.94835 1.03952 0.93431 1.23319 0.97589 0.97349 1.06295 1.21248 0.93010 0.97823 0.88745 1.48144 1.14860 1.52382 1.16423 1.18844 0.95012 0.90927 0.80858 1.21640 1.39006 0.95435 1.02679 0.92810 1.25813 0.94748 1.03621 0.94507 1.70029 1.42033 1.37829 1.06485 0.85485 0.78558 0.78802 0.78092 1.18404 1.20259 1.20412 1.17710 0.81918 0.78670 0.86439 1.90780 1.53059 1.61800 1.39600 1.19996 0.92270 1.07594 0.89185 1.20980 0.96096 1.01670 0.96022 1.18097 0.93990 1.05946 0.94949 1.20339 0.99472 0.96184 0.91767 1.20367 0.91401 1.04718 0.92869 1.98361 1.56106 1.82113 1.67584 1.21055 0.89689 0.98066 1.00978 1.20347 1.01703 1.01152 0.89780 1.18847 0.91251 0.99013 0.91972 1.43505 1.12233 1.51353 1.11436 0.71148 0.85575 0.87085 0.87098 0.88177 0.88790 0.95073 0.97887 0.92237 0.83089 0.83987 0.81658 0.81812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 14.32 67.78 0.97 -1.44 16 2 C -0.23 -5.41 7.90 25.64 0.20 -5.21 16 3 C 0.11 3.45 5.40 85.63 0.46 3.92 16 4 N -0.59 -25.13 2.46 -834.82 -2.06 -27.19 16 5 C 0.26 14.03 5.15 85.63 0.44 14.47 16 6 C -0.55 -31.17 9.39 25.60 0.24 -30.93 16 7 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 8 C 0.01 0.73 5.46 84.66 0.46 1.19 16 9 N -0.92 -54.88 13.29 21.45 0.28 -54.60 16 10 Si 0.97 44.20 29.54 68.60 2.03 46.23 16 11 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 12 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 13 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 14 C 0.56 24.97 7.57 86.55 0.66 25.63 16 15 O -0.57 -30.69 16.43 -4.17 -0.07 -30.76 16 16 C 0.02 0.68 6.56 39.91 0.26 0.94 16 17 C -0.12 -3.87 10.55 22.55 0.24 -3.63 16 18 C -0.12 -3.30 6.16 -21.36 -0.13 -3.44 16 19 C -0.06 -1.28 9.82 22.33 0.22 -1.06 16 20 C -0.07 -1.23 6.28 22.06 0.14 -1.10 16 21 Cl -0.07 -1.19 28.93 -2.72 -0.08 -1.27 16 22 C -0.08 -1.18 9.79 22.33 0.22 -0.96 16 23 C -0.11 -1.77 10.07 22.37 0.23 -1.55 16 24 C 0.10 2.35 7.25 39.12 0.28 2.63 16 25 N -0.57 -14.77 4.51 -177.18 -0.80 -15.57 16 26 H 0.44 9.58 3.45 -92.71 -0.32 9.26 16 27 H 0.13 1.80 8.06 -2.91 -0.02 1.78 16 28 H 0.11 2.00 7.84 -2.91 -0.02 1.98 16 29 H 0.11 2.67 7.35 -2.91 -0.02 2.65 16 30 H 0.10 3.03 7.67 -2.38 -0.02 3.01 16 31 H 0.09 2.47 5.13 -2.39 -0.01 2.45 16 32 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16 33 H 0.00 0.19 7.39 -2.39 -0.02 0.17 16 34 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 35 H 0.15 4.83 8.06 -2.91 -0.02 4.81 16 36 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 37 H 0.17 1.53 8.06 -2.91 -0.02 1.50 16 38 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -72.00 341.45 4.98 -67.02 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 0.78 Total: 16.68 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 4.89 Total: -0.55 kcal Atomic # 7 Polarization: -94.78 SS G_CDS: -2.57 Total: -97.35 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -0.07 Total: -30.76 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.27 kcal Total: -72.00 4.98 -67.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590409123.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.176 kcal (2) G-P(sol) polarization free energy of solvation -71.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds