Wall clock time and date at job start Tue Mar 31 2020 12:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99871 * 2 1 4 4 H 1.48504 * 109.47257 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47156 * 299.99771 * 3 2 1 6 6 H 1.48494 * 109.47301 * 60.00143 * 3 2 1 7 7 C 1.37879 * 120.00301 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00072 * 173.82449 * 7 2 1 9 9 C 1.50697 * 119.99592 * 353.82151 * 7 2 1 10 10 C 1.52999 * 115.54811 * 84.91239 * 9 7 2 11 11 S 1.80993 * 109.47441 * 39.92170 * 10 9 7 12 12 C 1.76200 * 100.00177 * 180.02562 * 11 10 9 13 13 N 1.31396 * 125.66270 * 0.04256 * 12 11 10 14 14 C 1.33942 * 109.60907 * 179.72749 * 13 12 11 15 15 C 1.35865 * 108.21150 * 0.38332 * 14 13 12 16 16 C 1.47805 * 126.68405 * 179.89379 * 15 14 13 17 17 C 1.39601 * 120.12517 * 179.40532 * 16 15 14 18 18 C 1.37927 * 119.87930 * 180.27797 * 17 16 15 19 19 C 1.38571 * 120.12253 * 0.02562 * 18 17 16 20 20 F 1.35095 * 119.87849 * 180.02562 * 19 18 17 21 21 C 1.38569 * 120.24624 * 359.97438 * 19 18 17 22 22 C 1.37928 * 120.12685 * 0.02562 * 21 19 18 23 23 N 1.36172 * 125.66348 * 179.97438 * 12 11 10 24 24 H 0.96995 * 126.56556 * 0.03352 * 23 12 11 25 25 C 1.52996 * 117.51764 * 230.60400 * 9 7 2 26 26 C 1.52991 * 117.50141 * 299.23727 * 9 7 2 27 27 H 0.96998 * 119.99951 * 354.97800 * 1 2 3 28 28 H 1.09002 * 109.47024 * 279.91745 * 10 9 7 29 29 H 1.09006 * 109.47496 * 159.92352 * 10 9 7 30 30 H 1.08001 * 125.89219 * 180.23692 * 14 13 12 31 31 H 1.08001 * 120.06073 * 0.25078 * 17 16 15 32 32 H 1.07997 * 119.94024 * 179.97438 * 18 17 16 33 33 H 1.08008 * 119.93916 * 179.97438 * 21 19 18 34 34 H 1.08004 * 120.06367 * 180.02562 * 22 21 19 35 35 H 1.09001 * 117.50480 * 214.97046 * 25 9 7 36 36 H 1.09005 * 117.50119 * 359.97438 * 25 9 7 37 37 H 1.08999 * 117.49977 * 359.97438 * 26 9 7 38 38 H 1.09000 * 117.50258 * 144.97457 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0799 -1.1968 -0.1001 9 6 1.2576 -2.4952 0.1416 10 6 0.6967 -3.0782 -1.1570 11 16 1.8979 -2.8463 -2.4909 12 6 1.0187 -3.5863 -3.8266 13 7 -0.1772 -4.1253 -3.7513 14 6 -0.5397 -4.5852 -4.9559 15 6 0.4716 -4.3345 -5.8280 16 6 0.5018 -4.6739 -7.2662 17 6 1.6132 -4.3394 -8.0419 18 6 1.6336 -4.6534 -9.3848 19 6 0.5533 -5.2994 -9.9644 20 9 0.5787 -5.6051 -11.2800 21 6 -0.5525 -5.6338 -9.1993 22 6 -0.5838 -5.3247 -7.8555 23 7 1.4653 -3.6934 -5.1085 24 1 2.3168 -3.3805 -5.4518 25 6 1.7486 -3.4806 1.2040 26 6 0.4455 -2.7086 1.4205 27 1 -0.4850 0.8368 0.0735 28 1 -0.2326 -2.5689 -1.4123 29 1 0.5029 -4.1426 -1.0237 30 1 -1.4735 -5.0734 -5.1926 31 1 2.4554 -3.8352 -7.5914 32 1 2.4927 -4.3947 -9.9858 33 1 -1.3920 -6.1369 -9.6562 34 1 -1.4460 -5.5862 -7.2600 35 1 1.6719 -4.5441 0.9780 36 1 2.6124 -3.1880 1.8010 37 1 0.4518 -1.9080 2.1601 38 1 -0.4887 -3.2639 1.3367 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594882915.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:01 Heat of formation + Delta-G solvation = 52.082293 kcal Electronic energy + Delta-G solvation = -22336.941963 eV Core-core repulsion = 18800.314261 eV Total energy + Delta-G solvation = -3536.627702 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.090 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.13924 -41.60694 -38.96368 -36.64305 -32.68790 -32.02923 -31.91845 -31.26310 -28.25243 -27.47581 -25.40608 -23.49728 -23.35980 -21.34383 -21.16054 -20.68380 -19.48499 -18.64410 -17.77276 -16.51790 -16.29866 -15.84635 -15.71869 -15.08411 -14.99731 -14.65199 -14.30073 -14.07407 -13.85463 -13.70292 -13.40814 -13.28649 -12.97528 -12.70635 -12.47722 -12.11489 -11.55218 -11.32636 -11.06768 -10.93829 -10.54798 -10.26701 -10.03950 -10.00825 -9.88166 -9.67983 -9.63393 -9.47162 -8.87922 -8.53326 -8.32163 -8.09294 -6.67545 -6.12393 -4.19903 0.53655 0.91507 1.85607 2.17405 3.06996 3.13839 3.25142 3.34144 3.36887 3.41475 3.55605 3.96588 4.35136 4.37320 4.51667 4.54134 4.87527 4.98949 5.15475 5.17794 5.25809 5.43949 5.54830 5.65599 5.80218 5.82514 5.91178 5.98612 6.17403 6.35561 6.43535 6.48423 6.53524 6.70131 6.73825 6.83902 7.04155 7.26924 7.29277 7.42720 7.78909 8.08380 8.27631 8.81659 9.47054 10.95707 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.022652 B = 0.002658 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.771638 B =10531.513456 C =11150.557211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.080 3.920 3 Si 0.887 3.113 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.496 4.496 8 H 0.065 0.935 9 C 0.047 3.953 10 C -0.037 4.037 11 S 0.018 5.982 12 C 0.215 3.785 13 N -0.495 5.495 14 C 0.023 3.977 15 C -0.015 4.015 16 C 0.002 3.998 17 C -0.100 4.100 18 C -0.141 4.141 19 C 0.084 3.916 20 F -0.142 7.142 21 C -0.141 4.141 22 C -0.082 4.082 23 N -0.558 5.558 24 H 0.419 0.581 25 C -0.207 4.207 26 C -0.146 4.146 27 H 0.262 0.738 28 H 0.093 0.907 29 H 0.063 0.937 30 H 0.171 0.829 31 H 0.127 0.873 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.931 -9.668 -15.399 18.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.125 4.125 3 Si 0.714 3.286 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.536 4.536 8 H 0.083 0.917 9 C 0.045 3.955 10 C -0.186 4.186 11 S 0.252 5.748 12 C -0.155 4.155 13 N -0.217 5.217 14 C -0.130 4.130 15 C -0.132 4.132 16 C 0.001 3.999 17 C -0.119 4.119 18 C -0.160 4.160 19 C 0.064 3.936 20 F -0.121 7.121 21 C -0.160 4.160 22 C -0.101 4.101 23 N -0.165 5.165 24 H 0.258 0.742 25 C -0.244 4.244 26 C -0.186 4.186 27 H 0.071 0.929 28 H 0.112 0.888 29 H 0.082 0.918 30 H 0.188 0.812 31 H 0.144 0.856 32 H 0.154 0.846 33 H 0.156 0.844 34 H 0.157 0.843 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.352 -9.100 -14.753 17.386 hybrid contribution -0.062 0.540 -1.194 1.312 sum 1.290 -8.561 -15.946 18.145 Atomic orbital electron populations 1.70017 1.05925 1.26993 1.47358 1.24940 0.94725 0.98916 0.93947 0.86618 0.80427 0.83857 0.77697 1.19530 1.20868 1.20924 1.20393 0.92927 0.88552 1.51719 0.91739 1.18548 0.98502 0.94075 0.84422 1.23202 0.99049 1.01558 0.94791 1.86065 1.23001 1.68667 0.97055 1.26595 0.95785 1.03280 0.89805 1.70810 1.10275 1.16557 1.24055 1.22401 0.98800 1.03062 0.88718 1.19410 0.92627 1.09137 0.91991 1.17963 0.94568 0.98043 0.89370 1.20965 0.97884 1.00010 0.93009 1.20998 0.98461 1.00846 0.95712 1.17746 0.96318 1.01314 0.78185 1.91493 1.96832 1.91261 1.32482 1.21050 0.98049 1.02632 0.94255 1.20948 0.97970 0.97384 0.93801 1.43273 1.17448 1.47501 1.08297 0.74224 1.23100 0.98617 0.95689 1.07031 1.22554 0.92425 1.01177 1.02433 0.92860 0.88820 0.91825 0.81195 0.85553 0.84601 0.84352 0.84282 0.91411 0.90152 0.89735 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.52 12.93 55.43 0.72 -22.81 16 2 C 0.08 2.08 5.39 -17.82 -0.10 1.98 16 3 Si 0.89 20.32 29.55 -169.99 -5.02 15.30 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.50 -12.65 7.54 -34.44 -0.26 -12.91 16 8 H 0.06 1.66 7.82 -52.48 -0.41 1.25 16 9 C 0.05 1.09 1.64 -155.67 -0.26 0.83 16 10 C -0.04 -0.81 5.30 37.16 0.20 -0.61 16 11 S 0.02 0.35 21.16 -107.50 -2.27 -1.93 16 12 C 0.22 3.88 8.25 -88.59 -0.73 3.15 16 13 N -0.49 -9.27 10.56 -13.16 -0.14 -9.41 16 14 C 0.02 0.35 11.26 -17.48 -0.20 0.15 16 15 C -0.02 -0.21 6.97 -81.82 -0.57 -0.78 16 16 C 0.00 0.03 5.87 -104.96 -0.62 -0.59 16 17 C -0.10 -0.97 9.72 -39.19 -0.38 -1.35 16 18 C -0.14 -1.29 10.01 -39.57 -0.40 -1.68 16 19 C 0.08 0.82 7.30 -39.34 -0.29 0.53 16 20 F -0.14 -1.47 17.26 2.25 0.04 -1.43 16 21 C -0.14 -1.24 10.01 -39.57 -0.40 -1.63 16 22 C -0.08 -0.77 9.58 -39.18 -0.38 -1.14 16 23 N -0.56 -8.05 6.15 -9.31 -0.06 -8.11 16 24 H 0.42 4.81 8.22 -40.82 -0.34 4.48 16 25 C -0.21 -4.29 9.88 -26.73 -0.26 -4.56 16 26 C -0.15 -3.27 9.47 -26.74 -0.25 -3.52 16 27 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 28 H 0.09 2.30 8.14 -51.92 -0.42 1.88 16 29 H 0.06 1.32 7.95 -51.91 -0.41 0.91 16 30 H 0.17 1.99 7.29 -52.49 -0.38 1.61 16 31 H 0.13 1.02 7.30 -52.49 -0.38 0.64 16 32 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 34 H 0.14 1.04 7.04 -52.48 -0.37 0.67 16 35 H 0.07 1.28 8.08 -51.93 -0.42 0.86 16 36 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 37 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 38 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 LS Contribution 347.81 15.07 5.24 5.24 Total: -1.00 -28.85 347.81 -10.76 -39.61 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -4.39 Total: 5.66 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -4.88 Total: -22.13 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: 0.52 Total: -40.32 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 0.35 SS G_CDS: -2.27 Total: -1.93 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.85 -10.76 -39.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594882915.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.690 kcal (2) G-P(sol) polarization free energy of solvation -28.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds