Wall clock time and date at job start Tue Mar 31 2020 12:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99871 * 2 1 4 4 H 1.48504 * 109.47257 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47156 * 299.99771 * 3 2 1 6 6 H 1.48494 * 109.47301 * 60.00143 * 3 2 1 7 7 C 1.37879 * 120.00301 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00072 * 173.82449 * 7 2 1 9 9 C 1.50697 * 119.99592 * 353.82151 * 7 2 1 10 10 C 1.52999 * 115.54811 * 84.91239 * 9 7 2 11 11 S 1.80993 * 109.47441 * 39.92170 * 10 9 7 12 12 C 1.76200 * 100.00177 * 180.02562 * 11 10 9 13 13 N 1.31396 * 125.66270 * 0.04256 * 12 11 10 14 14 C 1.33942 * 109.60907 * 179.72749 * 13 12 11 15 15 C 1.35865 * 108.21150 * 0.38332 * 14 13 12 16 16 C 1.47805 * 126.68405 * 179.89379 * 15 14 13 17 17 C 1.39601 * 120.12517 * 179.40532 * 16 15 14 18 18 C 1.37927 * 119.87930 * 180.27797 * 17 16 15 19 19 C 1.38571 * 120.12253 * 0.02562 * 18 17 16 20 20 F 1.35095 * 119.87849 * 180.02562 * 19 18 17 21 21 C 1.38569 * 120.24624 * 359.97438 * 19 18 17 22 22 C 1.37928 * 120.12685 * 0.02562 * 21 19 18 23 23 N 1.36172 * 125.66348 * 179.97438 * 12 11 10 24 24 H 0.96995 * 126.56556 * 0.03352 * 23 12 11 25 25 C 1.52996 * 117.51764 * 230.60400 * 9 7 2 26 26 C 1.52991 * 117.50141 * 299.23727 * 9 7 2 27 27 H 0.96998 * 119.99951 * 354.97800 * 1 2 3 28 28 H 1.09002 * 109.47024 * 279.91745 * 10 9 7 29 29 H 1.09006 * 109.47496 * 159.92352 * 10 9 7 30 30 H 1.08001 * 125.89219 * 180.23692 * 14 13 12 31 31 H 1.08001 * 120.06073 * 0.25078 * 17 16 15 32 32 H 1.07997 * 119.94024 * 179.97438 * 18 17 16 33 33 H 1.08008 * 119.93916 * 179.97438 * 21 19 18 34 34 H 1.08004 * 120.06367 * 180.02562 * 22 21 19 35 35 H 1.09001 * 117.50480 * 214.97046 * 25 9 7 36 36 H 1.09005 * 117.50119 * 359.97438 * 25 9 7 37 37 H 1.08999 * 117.49977 * 359.97438 * 26 9 7 38 38 H 1.09000 * 117.50258 * 144.97457 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0799 -1.1968 -0.1001 9 6 1.2576 -2.4952 0.1416 10 6 0.6967 -3.0782 -1.1570 11 16 1.8979 -2.8463 -2.4909 12 6 1.0187 -3.5863 -3.8266 13 7 -0.1772 -4.1253 -3.7513 14 6 -0.5397 -4.5852 -4.9559 15 6 0.4716 -4.3345 -5.8280 16 6 0.5018 -4.6739 -7.2662 17 6 1.6132 -4.3394 -8.0419 18 6 1.6336 -4.6534 -9.3848 19 6 0.5533 -5.2994 -9.9644 20 9 0.5787 -5.6051 -11.2800 21 6 -0.5525 -5.6338 -9.1993 22 6 -0.5838 -5.3247 -7.8555 23 7 1.4653 -3.6934 -5.1085 24 1 2.3168 -3.3805 -5.4518 25 6 1.7486 -3.4806 1.2040 26 6 0.4455 -2.7086 1.4205 27 1 -0.4850 0.8368 0.0735 28 1 -0.2326 -2.5689 -1.4123 29 1 0.5029 -4.1426 -1.0237 30 1 -1.4735 -5.0734 -5.1926 31 1 2.4554 -3.8352 -7.5914 32 1 2.4927 -4.3947 -9.9858 33 1 -1.3920 -6.1369 -9.6562 34 1 -1.4460 -5.5862 -7.2600 35 1 1.6719 -4.5441 0.9780 36 1 2.6124 -3.1880 1.8010 37 1 0.4518 -1.9080 2.1601 38 1 -0.4887 -3.2639 1.3367 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594882915.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:00 Heat of formation + Delta-G solvation = 38.945368 kcal Electronic energy + Delta-G solvation = -22337.511623 eV Core-core repulsion = 18800.314261 eV Total energy + Delta-G solvation = -3537.197362 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.090 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.91616 -42.79814 -39.74161 -38.42527 -33.99568 -33.84255 -32.83159 -32.06124 -29.66096 -28.85817 -27.34082 -24.35862 -24.26191 -22.90496 -22.47048 -21.77758 -21.18705 -19.84394 -18.61550 -18.06795 -17.29169 -16.89226 -16.62611 -16.57108 -16.29099 -16.20327 -15.58928 -15.21549 -15.11232 -14.90886 -14.63134 -14.43476 -14.10954 -13.96267 -13.50120 -13.47251 -13.18776 -12.95225 -12.80451 -12.34459 -12.02853 -11.99375 -11.67785 -11.39872 -11.25756 -11.14829 -10.76973 -10.68099 -10.45616 -10.16679 -9.90771 -9.38756 -8.11795 -8.04533 -6.20830 -0.32608 0.21857 0.43663 1.08193 1.41829 1.46430 1.53966 1.55838 1.97454 2.22144 2.45439 2.70422 3.21194 3.22939 3.48007 3.58690 3.66695 3.87389 4.05180 4.19859 4.22385 4.25040 4.37754 4.42547 4.69443 4.71994 4.80424 4.85148 4.95845 5.01914 5.03912 5.09140 5.15515 5.25832 5.45513 5.50815 5.60688 5.65100 5.78772 5.81058 6.17833 6.36125 6.84410 6.86406 7.48219 8.98711 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.022652 B = 0.002658 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.771638 B =10531.513456 C =11150.557211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.037 3.963 3 Si 0.940 3.060 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.282 1.282 7 C -0.500 4.500 8 H 0.058 0.942 9 C 0.020 3.980 10 C -0.023 4.023 11 S 0.009 5.991 12 C 0.185 3.815 13 N -0.523 5.523 14 C -0.006 4.006 15 C 0.015 3.985 16 C -0.023 4.023 17 C -0.097 4.097 18 C -0.145 4.145 19 C 0.079 3.921 20 F -0.146 7.146 21 C -0.141 4.141 22 C -0.075 4.075 23 N -0.545 5.545 24 H 0.432 0.568 25 C -0.181 4.181 26 C -0.152 4.152 27 H 0.259 0.741 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.198 0.802 31 H 0.140 0.860 32 H 0.155 0.845 33 H 0.161 0.839 34 H 0.158 0.842 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.517 -10.708 -17.470 20.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.208 1.208 7 C -0.539 4.539 8 H 0.076 0.924 9 C 0.018 3.982 10 C -0.172 4.172 11 S 0.243 5.757 12 C -0.185 4.185 13 N -0.246 5.246 14 C -0.158 4.158 15 C -0.102 4.102 16 C -0.025 4.025 17 C -0.116 4.116 18 C -0.163 4.163 19 C 0.060 3.940 20 F -0.125 7.125 21 C -0.160 4.160 22 C -0.094 4.094 23 N -0.153 5.153 24 H 0.273 0.727 25 C -0.218 4.218 26 C -0.192 4.192 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.215 0.785 31 H 0.158 0.842 32 H 0.173 0.827 33 H 0.179 0.821 34 H 0.175 0.825 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.964 -10.139 -16.824 19.741 hybrid contribution -0.268 0.729 -0.829 1.136 sum 1.697 -9.410 -17.653 20.076 Atomic orbital electron populations 1.70122 1.07061 1.27348 1.49029 1.25552 0.95315 1.01574 0.94027 0.85781 0.79622 0.80617 0.77370 1.18859 1.21110 1.20791 1.20561 0.92681 0.89689 1.50944 0.92431 1.18661 0.99585 0.94537 0.85449 1.22862 0.98064 1.01111 0.95177 1.85731 1.22429 1.70261 0.97322 1.25988 0.96332 1.05734 0.90443 1.70700 1.10735 1.16895 1.26289 1.22900 1.00588 1.04411 0.87856 1.19805 0.91287 1.06241 0.92907 1.18012 0.96183 1.00287 0.87988 1.21154 0.97834 0.99400 0.93218 1.21204 0.99038 1.00472 0.95612 1.18027 0.96836 1.01056 0.78107 1.91489 1.96872 1.91266 1.32835 1.21297 0.98484 1.02255 0.93915 1.21189 0.97905 0.96105 0.94175 1.43230 1.18111 1.46733 1.07247 0.72707 1.23106 0.97528 0.96425 1.04750 1.22472 0.93701 1.01333 1.01705 0.93147 0.92338 0.91220 0.78481 0.84220 0.82741 0.82096 0.82470 0.89040 0.89732 0.91626 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.02 12.93 21.45 0.28 -49.74 16 2 C 0.04 1.96 5.39 84.66 0.46 2.42 16 3 Si 0.94 42.15 29.55 68.60 2.03 44.18 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.50 -25.78 7.54 25.60 0.19 -25.59 16 8 H 0.06 2.98 7.82 -2.91 -0.02 2.96 16 9 C 0.02 0.93 1.64 -52.93 -0.09 0.84 16 10 C -0.02 -1.02 5.30 71.98 0.38 -0.64 16 11 S 0.01 0.37 21.16 -56.49 -1.20 -0.83 16 12 C 0.19 6.69 8.25 179.64 1.48 8.17 16 13 N -0.52 -19.63 10.56 -195.55 -2.06 -21.69 16 14 C -0.01 -0.17 11.26 83.82 0.94 0.77 16 15 C 0.01 0.38 6.97 40.08 0.28 0.66 16 16 C -0.02 -0.45 5.87 -20.09 -0.12 -0.56 16 17 C -0.10 -1.62 9.72 22.53 0.22 -1.41 16 18 C -0.14 -2.21 10.01 22.28 0.22 -1.99 16 19 C 0.08 1.31 7.30 22.43 0.16 1.48 16 20 F -0.15 -2.64 17.26 44.97 0.78 -1.87 16 21 C -0.14 -2.02 10.01 22.28 0.22 -1.80 16 22 C -0.07 -1.17 9.58 22.53 0.22 -0.96 16 23 N -0.55 -15.15 6.15 -183.37 -1.13 -16.27 16 24 H 0.43 9.32 8.22 -92.71 -0.76 8.55 16 25 C -0.18 -7.36 9.88 30.59 0.30 -7.06 16 26 C -0.15 -6.90 9.47 30.59 0.29 -6.61 16 27 H 0.26 13.90 8.32 -92.71 -0.77 13.13 16 28 H 0.06 2.99 8.14 -2.39 -0.02 2.97 16 29 H 0.07 2.95 7.95 -2.39 -0.02 2.93 16 30 H 0.20 4.27 7.29 -2.91 -0.02 4.24 16 31 H 0.14 1.88 7.30 -2.91 -0.02 1.86 16 32 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 33 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 34 H 0.16 1.83 7.04 -2.91 -0.02 1.81 16 35 H 0.09 3.27 8.08 -2.39 -0.02 3.25 16 36 H 0.08 3.35 8.14 -2.38 -0.02 3.33 16 37 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 38 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -62.74 347.81 4.20 -58.55 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.34 Total: 19.96 kcal Atomic # 6 Polarization: -37.44 SS G_CDS: 5.17 Total: -32.28 kcal Atomic # 7 Polarization: -84.80 SS G_CDS: -2.92 Total: -87.71 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.78 Total: -1.87 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Atomic # 16 Polarization: 0.37 SS G_CDS: -1.20 Total: -0.83 kcal Total: -62.74 4.20 -58.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594882915.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.491 kcal (2) G-P(sol) polarization free energy of solvation -62.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds