Wall clock time and date at job start Tue Mar 31 2020 12:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46509 * 109.47058 * 2 1 4 4 C 1.46501 * 119.99973 * 275.00431 * 3 2 1 5 5 C 1.50700 * 109.46831 * 274.99575 * 4 3 2 6 6 H 1.08001 * 120.00128 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99880 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99927 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99860 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47022 * 89.99693 * 9 7 5 11 11 H 1.48501 * 109.47040 * 209.99599 * 9 7 5 12 12 H 1.48501 * 109.47102 * 329.99726 * 9 7 5 13 13 S 1.65596 * 119.99590 * 95.00035 * 3 2 1 14 14 O 1.42099 * 106.40381 * 336.46104 * 13 3 2 15 15 O 1.42099 * 106.39967 * 203.54056 * 13 3 2 16 16 N 1.65603 * 107.21727 * 90.00550 * 13 3 2 17 17 C 1.46511 * 119.99498 * 269.99830 * 16 13 3 18 18 C 1.46496 * 120.00309 * 89.99337 * 16 13 3 19 19 C 1.50703 * 109.46724 * 95.00129 * 18 16 13 20 20 C 1.38425 * 122.53762 * 90.00099 * 19 18 16 21 21 C 1.33390 * 114.92123 * 179.97438 * 20 19 18 22 22 S 1.75891 * 109.59251 * 0.02562 * 21 20 19 23 23 C 1.33383 * 122.54063 * 269.97373 * 19 18 16 24 24 H 1.08999 * 109.46790 * 299.99737 * 1 2 3 25 25 H 1.08997 * 109.47196 * 59.99524 * 1 2 3 26 26 H 1.08997 * 109.47144 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47060 * 240.00641 * 2 1 3 28 28 H 1.08995 * 109.47120 * 119.99929 * 2 1 3 29 29 H 1.08997 * 109.47455 * 34.99869 * 4 3 2 30 30 H 1.09000 * 109.46888 * 154.99706 * 4 3 2 31 31 H 0.97008 * 120.00123 * 179.97438 * 8 7 5 32 32 H 1.08996 * 109.46766 * 269.99425 * 17 16 13 33 33 H 1.08999 * 109.47030 * 29.99617 * 17 16 13 34 34 H 1.08996 * 109.46555 * 150.00055 * 17 16 13 35 35 H 1.08999 * 109.47237 * 335.00261 * 18 16 13 36 36 H 1.09003 * 109.47393 * 214.99848 * 18 16 13 37 37 H 1.07997 * 122.54292 * 359.71157 * 20 19 18 38 38 H 1.08003 * 125.20243 * 179.97438 * 21 20 19 39 39 H 1.08000 * 125.20529 * 0.06732 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1088 -1.2639 5 6 3.4947 1.7890 -1.8823 6 1 4.1720 1.1113 -1.3840 7 6 3.8524 2.3608 -3.0849 8 7 5.0185 2.0813 -3.6248 9 14 2.6805 3.5324 -3.9472 10 1 2.9448 4.9210 -3.4920 11 1 2.8849 3.4455 -5.4155 12 1 1.2802 3.1622 -3.6196 13 16 2.4122 2.1202 1.4287 14 8 1.6868 1.4414 2.4448 15 8 2.3056 3.5186 1.1999 16 7 4.0144 1.8138 1.7137 17 6 4.4091 0.6237 2.4717 18 6 5.0372 2.7325 1.2078 19 6 5.4044 3.7187 2.2866 20 6 6.4212 3.4831 3.1959 21 6 6.6171 4.4580 4.0850 22 16 5.4742 5.7624 3.7915 23 6 4.7746 4.8848 2.4373 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 1.3617 1.8099 -1.9453 30 1 2.0920 3.1804 -1.0755 31 1 5.2700 2.4833 -4.4711 32 1 4.4547 0.8676 3.5330 33 1 3.6771 -0.1680 2.3120 34 1 5.3889 0.2863 2.1339 35 1 4.6479 3.2689 0.3425 36 1 5.9221 2.1665 0.9165 37 1 7.0084 2.5768 3.1889 38 1 7.3628 4.4476 4.8662 39 1 3.9591 5.2359 1.8225 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619706106.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:28 Heat of formation + Delta-G solvation = -35.349014 kcal Electronic energy + Delta-G solvation = -23852.250068 eV Core-core repulsion = 20434.902222 eV Total energy + Delta-G solvation = -3417.347846 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -38.34961 -36.77080 -36.18052 -35.28395 -35.15133 -32.67610 -30.26083 -29.98376 -27.24436 -27.12304 -25.00114 -22.93656 -22.41842 -21.52059 -18.87248 -18.24693 -17.61360 -17.15714 -16.86307 -16.54672 -15.99381 -15.18213 -14.86975 -14.23692 -13.94849 -13.72257 -13.37237 -12.97860 -12.74958 -12.72869 -12.63879 -12.51353 -12.37896 -12.04590 -12.02210 -11.94112 -11.67315 -11.45314 -11.20799 -11.16278 -11.01717 -10.94247 -10.68194 -10.50700 -10.42273 -10.16752 -9.62316 -8.79342 -8.68229 -8.60876 -8.29315 -8.10348 -6.19490 -4.19983 1.09565 1.27805 1.83902 2.15625 2.83217 3.23675 3.30703 3.34156 3.50343 4.07037 4.32132 4.87416 5.01376 5.12647 5.15010 5.34327 5.36672 5.57009 5.61949 5.66723 5.71090 5.75183 5.89552 5.95763 6.00773 6.12540 6.21789 6.25596 6.33531 6.48373 6.57001 6.62386 6.72680 6.83687 6.90854 7.12153 7.39748 7.52455 8.37885 8.84405 9.41622 10.92587 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.012582 B = 0.005936 C = 0.004765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.943547 B = 4715.645950 C = 5874.605879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.129 3.871 3 N -0.987 5.987 4 C 0.213 3.787 5 C -0.541 4.541 6 H 0.082 0.918 7 C 0.078 3.922 8 N -0.892 5.892 9 Si 0.866 3.134 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.264 1.264 13 S 2.786 3.214 14 O -0.995 6.995 15 O -0.979 6.979 16 N -0.999 5.999 17 C 0.101 3.899 18 C 0.189 3.811 19 C -0.129 4.129 20 C -0.115 4.115 21 C -0.224 4.224 22 S 0.070 5.930 23 C -0.179 4.179 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.042 0.958 31 H 0.265 0.735 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.138 0.862 38 H 0.160 0.840 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.485 -0.229 11.944 11.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.002 3.998 3 N -0.828 5.828 4 C 0.090 3.910 5 C -0.580 4.580 6 H 0.100 0.900 7 C -0.126 4.126 8 N -0.530 5.530 9 Si 0.693 3.307 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.188 1.188 13 S 2.795 3.205 14 O -0.979 6.979 15 O -0.963 6.963 16 N -0.836 5.836 17 C -0.045 4.045 18 C 0.061 3.939 19 C -0.142 4.142 20 C -0.146 4.146 21 C -0.359 4.359 22 S 0.333 5.667 23 C -0.315 4.315 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.124 0.876 36 H 0.106 0.894 37 H 0.156 0.844 38 H 0.178 0.822 39 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -0.251 1.698 13.020 13.132 hybrid contribution 0.163 -0.998 -1.512 1.819 sum -0.088 0.701 11.507 11.529 Atomic orbital electron populations 1.22218 0.96912 1.01601 1.02266 1.21027 0.93578 0.82661 1.02492 1.57602 1.78673 1.23019 1.23467 1.19586 0.98244 0.92080 0.81104 1.21450 1.00936 1.29215 1.06422 0.90011 1.24838 0.94908 0.96004 0.96830 1.69884 1.20496 1.43738 1.18860 0.86992 0.82236 0.82264 0.79191 1.19710 1.21059 1.18847 1.01801 0.72588 0.73365 0.72743 1.93537 1.70615 1.76400 1.57316 1.93520 1.85894 1.30855 1.85992 1.57850 1.24991 1.33079 1.67698 1.21354 1.01511 0.86299 0.95354 1.19888 0.92481 0.88724 0.92787 1.19514 0.97684 0.96579 1.00464 1.20099 0.99035 1.00064 0.95380 1.25480 1.05820 0.98547 1.06082 1.84142 1.30385 1.22722 1.29493 1.25927 1.05336 0.98369 1.01905 0.92602 0.92260 0.92099 0.89886 0.91739 0.94633 0.94004 0.92482 0.93213 0.91718 0.91179 0.87597 0.89440 0.84385 0.82238 0.80429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.56 10.24 37.16 0.38 -2.18 16 2 C 0.13 2.15 6.06 -4.04 -0.02 2.13 16 3 N -0.99 -19.37 2.82 -115.66 -0.33 -19.69 16 4 C 0.21 4.79 4.50 -5.19 -0.02 4.77 16 5 C -0.54 -13.69 9.94 -34.44 -0.34 -14.03 16 6 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 7 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 8 N -0.89 -25.22 13.96 55.43 0.77 -24.44 16 9 Si 0.87 20.26 27.47 -169.99 -4.67 15.59 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.26 -5.91 6.54 56.52 0.37 -5.54 16 13 S 2.79 53.97 5.97 -107.50 -0.64 53.32 16 14 O -0.99 -19.98 16.18 -57.17 -0.93 -20.90 16 15 O -0.98 -20.90 14.27 -57.17 -0.82 -21.72 16 16 N -1.00 -16.81 3.23 -123.05 -0.40 -17.21 16 17 C 0.10 1.37 10.33 59.85 0.62 1.99 16 18 C 0.19 3.20 5.62 -5.19 -0.03 3.17 16 19 C -0.13 -2.03 5.38 -106.25 -0.57 -2.60 16 20 C -0.11 -1.52 9.98 -41.21 -0.41 -1.94 16 21 C -0.22 -2.72 11.23 29.04 0.33 -2.40 16 22 S 0.07 0.92 23.34 -107.50 -2.51 -1.59 16 23 C -0.18 -2.88 10.56 29.04 0.31 -2.57 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16 28 H 0.06 0.97 7.26 -51.93 -0.38 0.59 16 29 H 0.04 0.79 7.17 -51.93 -0.37 0.42 16 30 H 0.04 0.98 6.34 -51.93 -0.33 0.65 16 31 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.84 7.44 -51.93 -0.39 0.45 16 34 H 0.07 0.81 7.94 -51.93 -0.41 0.40 16 35 H 0.11 2.06 7.59 -51.93 -0.39 1.67 16 36 H 0.09 1.37 7.95 -51.93 -0.41 0.95 16 37 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 38 H 0.16 1.48 8.06 -52.48 -0.42 1.06 16 39 H 0.18 3.05 7.10 -52.49 -0.37 2.68 16 LS Contribution 349.24 15.07 5.26 5.26 Total: -1.00 -30.11 349.24 -9.72 -39.83 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -5.60 Total: 3.22 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: 0.13 Total: -11.69 kcal Atomic # 7 Polarization: -61.39 SS G_CDS: 0.05 Total: -61.34 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -1.74 Total: -42.62 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.67 Total: 15.59 kcal Atomic # 16 Polarization: 54.89 SS G_CDS: -3.15 Total: 51.74 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.11 -9.72 -39.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619706106.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.486 kcal (2) G-P(sol) polarization free energy of solvation -30.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds