Wall clock time and date at job start Tue Mar 31 2020 12:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46509 * 109.47058 * 2 1 4 4 C 1.46501 * 119.99973 * 275.00431 * 3 2 1 5 5 C 1.50700 * 109.46831 * 274.99575 * 4 3 2 6 6 H 1.08001 * 120.00128 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99880 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99927 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99860 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47022 * 89.99693 * 9 7 5 11 11 H 1.48501 * 109.47040 * 209.99599 * 9 7 5 12 12 H 1.48501 * 109.47102 * 329.99726 * 9 7 5 13 13 S 1.65596 * 119.99590 * 95.00035 * 3 2 1 14 14 O 1.42099 * 106.40381 * 336.46104 * 13 3 2 15 15 O 1.42099 * 106.39967 * 203.54056 * 13 3 2 16 16 N 1.65603 * 107.21727 * 90.00550 * 13 3 2 17 17 C 1.46511 * 119.99498 * 269.99830 * 16 13 3 18 18 C 1.46496 * 120.00309 * 89.99337 * 16 13 3 19 19 C 1.50703 * 109.46724 * 95.00129 * 18 16 13 20 20 C 1.38425 * 122.53762 * 90.00099 * 19 18 16 21 21 C 1.33390 * 114.92123 * 179.97438 * 20 19 18 22 22 S 1.75891 * 109.59251 * 0.02562 * 21 20 19 23 23 C 1.33383 * 122.54063 * 269.97373 * 19 18 16 24 24 H 1.08999 * 109.46790 * 299.99737 * 1 2 3 25 25 H 1.08997 * 109.47196 * 59.99524 * 1 2 3 26 26 H 1.08997 * 109.47144 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47060 * 240.00641 * 2 1 3 28 28 H 1.08995 * 109.47120 * 119.99929 * 2 1 3 29 29 H 1.08997 * 109.47455 * 34.99869 * 4 3 2 30 30 H 1.09000 * 109.46888 * 154.99706 * 4 3 2 31 31 H 0.97008 * 120.00123 * 179.97438 * 8 7 5 32 32 H 1.08996 * 109.46766 * 269.99425 * 17 16 13 33 33 H 1.08999 * 109.47030 * 29.99617 * 17 16 13 34 34 H 1.08996 * 109.46555 * 150.00055 * 17 16 13 35 35 H 1.08999 * 109.47237 * 335.00261 * 18 16 13 36 36 H 1.09003 * 109.47393 * 214.99848 * 18 16 13 37 37 H 1.07997 * 122.54292 * 359.71157 * 20 19 18 38 38 H 1.08003 * 125.20243 * 179.97438 * 21 20 19 39 39 H 1.08000 * 125.20529 * 0.06732 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1088 -1.2639 5 6 3.4947 1.7890 -1.8823 6 1 4.1720 1.1113 -1.3840 7 6 3.8524 2.3608 -3.0849 8 7 5.0185 2.0813 -3.6248 9 14 2.6805 3.5324 -3.9472 10 1 2.9448 4.9210 -3.4920 11 1 2.8849 3.4455 -5.4155 12 1 1.2802 3.1622 -3.6196 13 16 2.4122 2.1202 1.4287 14 8 1.6868 1.4414 2.4448 15 8 2.3056 3.5186 1.1999 16 7 4.0144 1.8138 1.7137 17 6 4.4091 0.6237 2.4717 18 6 5.0372 2.7325 1.2078 19 6 5.4044 3.7187 2.2866 20 6 6.4212 3.4831 3.1959 21 6 6.6171 4.4580 4.0850 22 16 5.4742 5.7624 3.7915 23 6 4.7746 4.8848 2.4373 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 1.3617 1.8099 -1.9453 30 1 2.0920 3.1804 -1.0755 31 1 5.2700 2.4833 -4.4711 32 1 4.4547 0.8676 3.5330 33 1 3.6771 -0.1680 2.3120 34 1 5.3889 0.2863 2.1339 35 1 4.6479 3.2689 0.3425 36 1 5.9221 2.1665 0.9165 37 1 7.0084 2.5768 3.1889 38 1 7.3628 4.4476 4.8662 39 1 3.9591 5.2359 1.8225 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619706106.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:28 Heat of formation + Delta-G solvation = -54.734686 kcal Electronic energy + Delta-G solvation = -23853.090694 eV Core-core repulsion = 20434.902222 eV Total energy + Delta-G solvation = -3418.188472 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.51565 -38.34524 -37.75084 -36.87748 -36.39910 -34.63592 -31.81159 -31.10040 -28.91228 -28.39439 -26.22165 -24.57780 -23.55789 -23.10598 -20.17530 -19.54509 -19.06577 -18.86730 -18.42689 -17.95690 -17.45695 -16.54686 -16.25005 -15.97797 -15.40599 -14.94060 -14.67426 -14.60583 -14.20551 -14.10124 -13.87998 -13.75389 -13.72623 -13.54214 -13.53147 -13.26005 -13.07941 -13.01268 -12.77403 -12.62413 -12.52915 -12.33188 -12.17484 -12.08872 -11.76264 -11.68854 -11.57823 -10.74212 -10.08982 -9.78868 -9.67473 -9.33018 -8.25692 -6.28306 -0.36052 0.12197 0.76314 1.08751 1.36757 1.41054 1.47010 1.66859 2.07561 2.36153 2.58202 3.09294 3.37310 3.77454 3.94318 4.10229 4.19278 4.39329 4.40041 4.43952 4.61038 4.65611 4.69522 4.75272 4.87972 4.90240 4.93236 4.99033 5.01328 5.07384 5.16351 5.36553 5.43558 5.48056 5.50820 5.55748 5.66102 5.89508 6.35137 6.76779 7.35646 8.88838 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.012582 B = 0.005936 C = 0.004765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.943547 B = 4715.645950 C = 5874.605879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.118 3.882 3 N -0.992 5.992 4 C 0.221 3.779 5 C -0.528 4.528 6 H 0.059 0.941 7 C 0.028 3.972 8 N -0.933 5.933 9 Si 0.915 3.085 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.246 1.246 13 S 2.791 3.209 14 O -1.001 7.001 15 O -1.004 7.004 16 N -0.998 5.998 17 C 0.091 3.909 18 C 0.192 3.808 19 C -0.132 4.132 20 C -0.129 4.129 21 C -0.207 4.207 22 S 0.094 5.906 23 C -0.218 4.218 24 H 0.047 0.953 25 H 0.054 0.946 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.043 0.957 30 H 0.033 0.967 31 H 0.266 0.734 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.163 0.837 38 H 0.196 0.804 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.622 -0.833 13.465 13.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.007 4.007 3 N -0.832 5.832 4 C 0.096 3.904 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.171 4.171 8 N -0.573 5.573 9 Si 0.739 3.261 10 H -0.199 1.199 11 H -0.207 1.207 12 H -0.170 1.170 13 S 2.800 3.200 14 O -0.985 6.985 15 O -0.988 6.988 16 N -0.837 5.837 17 C -0.054 4.054 18 C 0.064 3.936 19 C -0.147 4.147 20 C -0.159 4.159 21 C -0.342 4.342 22 S 0.357 5.643 23 C -0.354 4.354 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.110 0.890 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.116 0.884 37 H 0.180 0.820 38 H 0.213 0.787 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.145 1.076 14.561 14.602 hybrid contribution 0.184 -0.850 -1.879 2.070 sum 0.040 0.226 12.682 12.684 Atomic orbital electron populations 1.22205 0.95422 1.03473 1.01609 1.21302 0.94919 0.81162 1.03291 1.57594 1.79233 1.24131 1.22276 1.19326 0.96762 0.91945 0.82324 1.21587 1.01590 1.27705 1.05846 0.92261 1.25511 0.96189 0.97626 0.97819 1.69993 1.22284 1.45487 1.19537 0.86203 0.81411 0.80223 0.78243 1.19932 1.20721 1.16985 1.01503 0.73137 0.72727 0.72583 1.93519 1.71302 1.76379 1.57338 1.93489 1.86531 1.32560 1.86255 1.57681 1.23905 1.34190 1.67916 1.21643 1.02851 0.85104 0.95765 1.19770 0.92381 0.89035 0.92414 1.19561 0.98508 0.96010 1.00595 1.20240 0.98870 1.01589 0.95172 1.25943 1.05241 0.97076 1.05916 1.84013 1.30154 1.22587 1.27517 1.25890 1.06012 0.99761 1.03784 0.93416 0.92714 0.89007 0.90087 0.89954 0.93881 0.94935 0.92523 0.91882 0.91137 0.88999 0.91151 0.88354 0.81994 0.78667 0.82753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.73 10.24 71.98 0.74 -4.00 16 2 C 0.12 3.81 6.06 86.38 0.52 4.33 16 3 N -0.99 -38.69 2.82 -519.83 -1.47 -40.16 16 4 C 0.22 9.95 4.50 85.63 0.39 10.34 16 5 C -0.53 -27.10 9.94 25.60 0.25 -26.84 16 6 H 0.06 3.26 8.06 -2.91 -0.02 3.23 16 7 C 0.03 1.51 5.47 84.66 0.46 1.97 16 8 N -0.93 -53.79 13.96 21.45 0.30 -53.49 16 9 Si 0.91 41.72 27.47 68.60 1.88 43.60 16 10 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.25 -10.44 6.54 99.48 0.65 -9.79 16 13 S 2.79 108.28 5.97 -56.49 -0.34 107.95 16 14 O -1.00 -39.41 16.18 -128.00 -2.07 -41.48 16 15 O -1.00 -44.15 14.27 -128.00 -1.83 -45.97 16 16 N -1.00 -33.23 3.23 -543.21 -1.75 -34.98 16 17 C 0.09 2.30 10.33 127.77 1.32 3.62 16 18 C 0.19 6.60 5.62 85.63 0.48 7.08 16 19 C -0.13 -4.12 5.38 -20.92 -0.11 -4.24 16 20 C -0.13 -3.12 9.98 21.22 0.21 -2.91 16 21 C -0.21 -4.39 11.23 66.72 0.75 -3.64 16 22 S 0.09 2.37 23.34 -56.49 -1.32 1.05 16 23 C -0.22 -7.15 10.56 66.72 0.70 -6.44 16 24 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.08 2.63 8.11 -2.38 -0.02 2.61 16 28 H 0.08 2.33 7.26 -2.39 -0.02 2.31 16 29 H 0.04 1.88 7.17 -2.39 -0.02 1.86 16 30 H 0.03 1.54 6.34 -2.39 -0.02 1.52 16 31 H 0.27 14.53 8.31 -92.70 -0.77 13.76 16 32 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.07 1.69 7.44 -2.39 -0.02 1.68 16 34 H 0.09 1.92 7.94 -2.39 -0.02 1.90 16 35 H 0.07 2.90 7.59 -2.39 -0.02 2.88 16 36 H 0.10 3.07 7.95 -2.39 -0.02 3.05 16 37 H 0.16 3.09 8.06 -2.91 -0.02 3.06 16 38 H 0.20 2.71 8.06 -2.91 -0.02 2.68 16 39 H 0.15 5.70 7.10 -2.91 -0.02 5.68 16 Total: -1.00 -65.28 349.24 0.11 -65.17 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 0.98 Total: 19.05 kcal Atomic # 6 Polarization: -26.44 SS G_CDS: 5.72 Total: -20.72 kcal Atomic # 7 Polarization: -125.71 SS G_CDS: -2.92 Total: -128.63 kcal Atomic # 8 Polarization: -83.56 SS G_CDS: -3.90 Total: -87.46 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 1.88 Total: 43.60 kcal Atomic # 16 Polarization: 110.65 SS G_CDS: -1.66 Total: 108.99 kcal Total: -65.28 0.11 -65.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619706106.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.437 kcal (2) G-P(sol) polarization free energy of solvation -65.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds