Wall clock time and date at job start Tue Mar 31 2020 12:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47031 * 2 1 4 4 C 1.50696 * 109.47050 * 120.00382 * 2 1 3 5 5 H 1.08002 * 119.99905 * 119.99859 * 4 2 1 6 6 C 1.37874 * 120.00075 * 299.99409 * 4 2 1 7 7 N 1.31514 * 120.00081 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99875 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47213 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46876 * 120.00627 * 8 6 4 11 11 H 1.48501 * 109.46987 * 240.00532 * 8 6 4 12 12 N 1.46498 * 109.47001 * 240.00341 * 2 1 3 13 13 C 1.46505 * 119.99894 * 300.00261 * 12 2 1 14 14 S 1.65603 * 120.00271 * 119.72220 * 12 2 1 15 15 O 1.42099 * 106.39669 * 29.15252 * 14 12 2 16 16 O 1.42090 * 106.40399 * 162.07672 * 14 12 2 17 17 N 1.65606 * 107.21822 * 275.61795 * 14 12 2 18 18 C 1.46499 * 119.99780 * 275.78969 * 17 14 12 19 19 C 1.46497 * 120.00074 * 95.78979 * 17 14 12 20 20 C 1.50700 * 109.46852 * 96.89264 * 19 17 14 21 21 C 1.38430 * 122.54102 * 273.81701 * 20 19 17 22 22 C 1.33387 * 114.92001 * 179.75886 * 21 20 19 23 23 S 1.75890 * 109.59432 * 0.48107 * 22 21 20 24 24 C 1.33389 * 122.54130 * 94.10681 * 20 19 17 25 25 H 1.09003 * 109.47509 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47168 * 299.99474 * 1 2 3 27 27 H 1.08996 * 109.47608 * 59.99498 * 1 2 3 28 28 H 0.97001 * 120.00129 * 179.97438 * 7 6 4 29 29 H 1.09005 * 109.46512 * 264.48334 * 13 12 2 30 30 H 1.08996 * 109.47499 * 24.48193 * 13 12 2 31 31 H 1.09001 * 109.46971 * 144.49143 * 13 12 2 32 32 H 1.08999 * 109.46869 * 90.00057 * 18 17 14 33 33 H 1.08996 * 109.47145 * 210.00221 * 18 17 14 34 34 H 1.09002 * 109.47116 * 330.00451 * 18 17 14 35 35 H 1.09002 * 109.47441 * 216.89127 * 19 17 14 36 36 H 1.08995 * 109.47396 * 336.89567 * 19 17 14 37 37 H 1.07997 * 122.53532 * 0.02562 * 21 20 19 38 38 H 1.07997 * 125.20871 * 180.20675 * 22 21 20 39 39 H 1.08003 * 125.20329 * 0.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3226 -1.1198 4.0078 9 1 3.1484 -2.2859 3.6035 10 1 3.1473 -0.1860 4.8159 11 1 1.1678 -1.5869 4.8163 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0931 -1.4281 14 16 2.9647 0.1163 -2.2898 15 8 3.6722 1.1055 -1.5550 16 8 3.6086 -0.8784 -3.0739 17 7 1.9473 0.9311 -3.3114 18 6 1.3643 0.2437 -4.4663 19 6 1.6305 2.3391 -3.0602 20 6 2.5254 3.2130 -3.9008 21 6 3.7866 3.6048 -3.4859 22 6 4.4495 4.3733 -4.3514 23 16 3.4551 4.6510 -5.7754 24 6 2.1600 3.6722 -5.0987 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 0.7083 1.1608 3.4845 29 1 2.4636 -2.7354 -1.0583 30 1 0.7384 -2.3259 -0.9023 31 1 1.5278 -2.2615 -2.4964 32 1 0.4160 -0.2100 -4.1783 33 1 1.1948 0.9615 -5.2688 34 1 2.0483 -0.5318 -4.8109 35 1 0.5891 2.5292 -3.3199 36 1 1.7890 2.5648 -2.0057 37 1 4.2039 3.3070 -2.5354 38 1 5.4429 4.7686 -4.1991 39 1 1.2134 3.4737 -5.5794 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619748077.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:27 Heat of formation + Delta-G solvation = -31.536264 kcal Electronic energy + Delta-G solvation = -23692.289190 eV Core-core repulsion = 20275.106677 eV Total energy + Delta-G solvation = -3417.182513 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -38.53074 -36.70115 -36.16679 -35.32629 -35.19248 -32.58399 -30.04614 -29.10704 -27.73237 -25.61452 -25.18155 -24.63307 -22.80540 -20.71092 -18.88026 -18.28255 -17.62889 -17.31574 -16.86245 -16.31846 -15.67213 -15.32474 -14.91328 -14.26385 -13.79970 -13.56886 -13.30141 -13.00511 -12.93923 -12.81242 -12.74450 -12.44323 -12.09016 -12.02459 -11.83511 -11.70022 -11.37852 -11.24355 -11.21162 -11.11716 -10.98947 -10.81550 -10.76337 -10.45435 -10.28726 -10.02674 -9.27568 -8.93419 -8.79159 -8.47063 -8.39679 -7.96458 -6.08712 -4.14742 0.95903 1.21785 1.68739 1.98709 2.73825 3.27214 3.35582 3.39860 3.53173 4.09376 4.39741 4.84049 4.90030 5.02966 5.09995 5.23055 5.39129 5.46731 5.57172 5.62663 5.71549 5.83410 5.85593 6.08520 6.13938 6.17803 6.35383 6.47350 6.54666 6.61040 6.69908 6.76422 6.83762 6.99686 7.45290 7.62457 7.76898 8.02824 8.26492 8.87784 9.51272 10.96998 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.020116 B = 0.004231 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.581250 B = 6616.788542 C = 7094.513770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.269 3.731 3 H 0.055 0.945 4 C -0.518 4.518 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.991 5.991 13 C 0.110 3.890 14 S 2.777 3.223 15 O -0.969 6.969 16 O -0.995 6.995 17 N -1.008 6.008 18 C 0.089 3.911 19 C 0.183 3.817 20 C -0.115 4.115 21 C -0.122 4.122 22 C -0.213 4.213 23 S 0.070 5.930 24 C -0.199 4.199 25 H 0.033 0.967 26 H 0.093 0.907 27 H 0.011 0.989 28 H 0.262 0.738 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.158 0.842 38 H 0.164 0.836 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.190 4.374 -15.120 15.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.167 3.833 3 H 0.073 0.927 4 C -0.557 4.557 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.833 5.833 13 C -0.037 4.037 14 S 2.787 3.213 15 O -0.953 6.953 16 O -0.979 6.979 17 N -0.845 5.845 18 C -0.057 4.057 19 C 0.054 3.946 20 C -0.129 4.129 21 C -0.152 4.152 22 C -0.348 4.348 23 S 0.333 5.667 24 C -0.335 4.335 25 H 0.052 0.948 26 H 0.111 0.889 27 H 0.030 0.970 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.118 0.882 37 H 0.175 0.825 38 H 0.181 0.819 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.117 5.288 -16.388 17.221 hybrid contribution -0.340 -1.189 2.134 2.466 sum -0.458 4.100 -14.254 14.839 Atomic orbital electron populations 1.22130 0.98291 0.99768 1.00612 1.18706 0.91232 0.92729 0.80670 0.92711 1.21369 1.31396 1.12956 0.90009 0.91942 1.24895 0.94957 0.95009 0.98980 1.69858 1.36654 1.22780 1.23668 0.86456 0.78617 0.79711 0.82730 1.19734 1.20895 1.21001 1.57788 1.70215 1.19739 1.35566 1.21143 1.01589 0.82022 0.98898 1.02097 0.73839 0.72931 0.72434 1.93570 1.69843 1.60468 1.71375 1.93513 1.73270 1.60210 1.70944 1.58124 1.67016 1.19045 1.40301 1.21460 0.98563 0.97378 0.88314 1.19864 0.97144 0.78166 0.99394 1.19450 0.96698 1.00860 0.95936 1.20522 0.94228 0.98378 1.02057 1.25586 1.04337 1.07254 0.97609 1.84098 1.09148 1.51566 1.21925 1.25467 1.03376 1.05301 0.99375 0.94780 0.88874 0.97011 0.92769 0.93500 0.90649 0.93504 0.92873 0.91391 0.90525 0.89755 0.88158 0.82504 0.81883 0.81963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.96 37.16 0.33 -2.92 16 2 C 0.27 6.41 2.59 -69.09 -0.18 6.23 16 3 H 0.06 1.42 7.06 -51.93 -0.37 1.05 16 4 C -0.52 -13.76 8.37 -34.44 -0.29 -14.05 16 5 H 0.06 1.67 7.65 -52.49 -0.40 1.27 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.29 11.32 55.43 0.63 -23.66 16 8 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 9 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.99 -20.38 3.12 -115.85 -0.36 -20.74 16 13 C 0.11 1.97 9.44 59.85 0.57 2.53 16 14 S 2.78 54.55 6.02 -107.50 -0.65 53.90 16 15 O -0.97 -21.59 14.49 -57.17 -0.83 -22.42 16 16 O -1.00 -20.85 15.87 -57.17 -0.91 -21.76 16 17 N -1.01 -15.42 3.23 -123.06 -0.40 -15.82 16 18 C 0.09 1.07 10.70 59.85 0.64 1.71 16 19 C 0.18 2.58 5.64 -5.20 -0.03 2.55 16 20 C -0.11 -1.58 5.37 -106.25 -0.57 -2.15 16 21 C -0.12 -1.79 9.87 -41.21 -0.41 -2.20 16 22 C -0.21 -2.65 11.23 29.04 0.33 -2.33 16 23 S 0.07 0.76 23.34 -107.50 -2.51 -1.74 16 24 C -0.20 -2.28 10.89 29.04 0.32 -1.97 16 25 H 0.03 0.71 6.67 -51.93 -0.35 0.36 16 26 H 0.09 2.27 6.07 -51.93 -0.32 1.96 16 27 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.07 1.30 6.44 -51.93 -0.33 0.97 16 31 H 0.05 0.70 7.85 -51.93 -0.41 0.30 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.67 7.99 -51.93 -0.42 0.25 16 34 H 0.08 0.97 7.08 -51.93 -0.37 0.60 16 35 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 36 H 0.10 1.59 7.38 -51.93 -0.38 1.21 16 37 H 0.16 2.56 7.02 -52.49 -0.37 2.20 16 38 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.16 1.45 8.06 -52.48 -0.42 1.03 16 LS Contribution 344.73 15.07 5.20 5.20 Total: -1.00 -30.94 344.73 -9.61 -40.55 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -5.37 Total: 1.53 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 0.61 Total: -10.97 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: -0.13 Total: -60.22 kcal Atomic # 8 Polarization: -42.44 SS G_CDS: -1.74 Total: -44.18 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 55.31 SS G_CDS: -3.16 Total: 52.16 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.94 -9.61 -40.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619748077.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.016 kcal (2) G-P(sol) polarization free energy of solvation -30.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds