Wall clock time and date at job start Tue Mar 31 2020 12:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47031 * 2 1 4 4 C 1.50696 * 109.47050 * 120.00382 * 2 1 3 5 5 H 1.08002 * 119.99905 * 119.99859 * 4 2 1 6 6 C 1.37874 * 120.00075 * 299.99409 * 4 2 1 7 7 N 1.31514 * 120.00081 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99875 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47213 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46876 * 120.00627 * 8 6 4 11 11 H 1.48501 * 109.46987 * 240.00532 * 8 6 4 12 12 N 1.46498 * 109.47001 * 240.00341 * 2 1 3 13 13 C 1.46505 * 119.99894 * 300.00261 * 12 2 1 14 14 S 1.65603 * 120.00271 * 119.72220 * 12 2 1 15 15 O 1.42099 * 106.39669 * 29.15252 * 14 12 2 16 16 O 1.42090 * 106.40399 * 162.07672 * 14 12 2 17 17 N 1.65606 * 107.21822 * 275.61795 * 14 12 2 18 18 C 1.46499 * 119.99780 * 275.78969 * 17 14 12 19 19 C 1.46497 * 120.00074 * 95.78979 * 17 14 12 20 20 C 1.50700 * 109.46852 * 96.89264 * 19 17 14 21 21 C 1.38430 * 122.54102 * 273.81701 * 20 19 17 22 22 C 1.33387 * 114.92001 * 179.75886 * 21 20 19 23 23 S 1.75890 * 109.59432 * 0.48107 * 22 21 20 24 24 C 1.33389 * 122.54130 * 94.10681 * 20 19 17 25 25 H 1.09003 * 109.47509 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47168 * 299.99474 * 1 2 3 27 27 H 1.08996 * 109.47608 * 59.99498 * 1 2 3 28 28 H 0.97001 * 120.00129 * 179.97438 * 7 6 4 29 29 H 1.09005 * 109.46512 * 264.48334 * 13 12 2 30 30 H 1.08996 * 109.47499 * 24.48193 * 13 12 2 31 31 H 1.09001 * 109.46971 * 144.49143 * 13 12 2 32 32 H 1.08999 * 109.46869 * 90.00057 * 18 17 14 33 33 H 1.08996 * 109.47145 * 210.00221 * 18 17 14 34 34 H 1.09002 * 109.47116 * 330.00451 * 18 17 14 35 35 H 1.09002 * 109.47441 * 216.89127 * 19 17 14 36 36 H 1.08995 * 109.47396 * 336.89567 * 19 17 14 37 37 H 1.07997 * 122.53532 * 0.02562 * 21 20 19 38 38 H 1.07997 * 125.20871 * 180.20675 * 22 21 20 39 39 H 1.08003 * 125.20329 * 0.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3226 -1.1198 4.0078 9 1 3.1484 -2.2859 3.6035 10 1 3.1473 -0.1860 4.8159 11 1 1.1678 -1.5869 4.8163 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0931 -1.4281 14 16 2.9647 0.1163 -2.2898 15 8 3.6722 1.1055 -1.5550 16 8 3.6086 -0.8784 -3.0739 17 7 1.9473 0.9311 -3.3114 18 6 1.3643 0.2437 -4.4663 19 6 1.6305 2.3391 -3.0602 20 6 2.5254 3.2130 -3.9008 21 6 3.7866 3.6048 -3.4859 22 6 4.4495 4.3733 -4.3514 23 16 3.4551 4.6510 -5.7754 24 6 2.1600 3.6722 -5.0987 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 0.7083 1.1608 3.4845 29 1 2.4636 -2.7354 -1.0583 30 1 0.7384 -2.3259 -0.9023 31 1 1.5278 -2.2615 -2.4964 32 1 0.4160 -0.2100 -4.1783 33 1 1.1948 0.9615 -5.2688 34 1 2.0483 -0.5318 -4.8109 35 1 0.5891 2.5292 -3.3199 36 1 1.7890 2.5648 -2.0057 37 1 4.2039 3.3070 -2.5354 38 1 5.4429 4.7686 -4.1991 39 1 1.2134 3.4737 -5.5794 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619748077.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:27 Heat of formation + Delta-G solvation = -51.785596 kcal Electronic energy + Delta-G solvation = -23693.167267 eV Core-core repulsion = 20275.106677 eV Total energy + Delta-G solvation = -3418.060590 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.55620 -38.32344 -37.87990 -36.84633 -36.43476 -34.51686 -31.06423 -30.88227 -28.72354 -27.27142 -27.02024 -25.73849 -23.84091 -22.49972 -20.08095 -19.57026 -18.82201 -18.69806 -18.39149 -18.08953 -17.19452 -16.65357 -16.31799 -15.78052 -15.18846 -14.87835 -14.85561 -14.56490 -14.19676 -13.84650 -13.73389 -13.70337 -13.54583 -13.30354 -13.27115 -13.16229 -13.10148 -12.98308 -12.79148 -12.60742 -12.51471 -12.34066 -12.20380 -12.11042 -11.88026 -11.74329 -11.13276 -10.50449 -10.08118 -9.76100 -9.64308 -9.29420 -8.11401 -6.24160 -0.37744 0.09767 0.78449 1.03765 1.40578 1.43941 1.54018 1.65493 2.13454 2.43561 2.62516 3.16939 3.40495 3.79098 4.06412 4.09830 4.16330 4.39109 4.54921 4.64592 4.67473 4.73837 4.78396 4.82847 4.92651 5.00168 5.04996 5.05783 5.13716 5.16225 5.17644 5.44264 5.49040 5.62660 5.64114 5.83802 5.89198 6.16532 6.32127 6.82951 7.44677 8.92640 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.020116 B = 0.004231 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.581250 B = 6616.788542 C = 7094.513770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.276 3.724 3 H 0.025 0.975 4 C -0.538 4.538 5 H 0.052 0.948 6 C 0.021 3.979 7 N -0.911 5.911 8 Si 0.951 3.049 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.998 5.998 13 C 0.104 3.896 14 S 2.786 3.214 15 O -1.006 7.006 16 O -1.012 7.012 17 N -1.000 6.000 18 C 0.080 3.920 19 C 0.181 3.819 20 C -0.140 4.140 21 C -0.154 4.154 22 C -0.221 4.221 23 S 0.122 5.878 24 C -0.187 4.187 25 H 0.041 0.959 26 H 0.067 0.933 27 H 0.038 0.962 28 H 0.264 0.736 29 H 0.037 0.963 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.119 0.881 36 H 0.071 0.929 37 H 0.125 0.875 38 H 0.178 0.822 39 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.516 4.447 -17.358 18.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.171 3.829 3 H 0.043 0.957 4 C -0.577 4.577 5 H 0.070 0.930 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.777 3.223 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.840 5.840 13 C -0.042 4.042 14 S 2.797 3.203 15 O -0.989 6.989 16 O -0.996 6.996 17 N -0.840 5.840 18 C -0.064 4.064 19 C 0.054 3.946 20 C -0.154 4.154 21 C -0.185 4.185 22 C -0.356 4.356 23 S 0.385 5.615 24 C -0.324 4.324 25 H 0.060 0.940 26 H 0.085 0.915 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.117 0.883 34 H 0.087 0.913 35 H 0.137 0.863 36 H 0.089 0.911 37 H 0.143 0.857 38 H 0.195 0.805 39 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -1.443 5.338 -18.633 19.436 hybrid contribution 0.108 -1.133 2.694 2.925 sum -1.334 4.206 -15.938 16.538 Atomic orbital electron populations 1.21912 0.96660 1.00215 1.00628 1.18388 0.92301 0.91134 0.81041 0.95748 1.21670 1.31508 1.12920 0.91637 0.92984 1.25572 0.95223 0.95706 1.01439 1.69962 1.37244 1.23593 1.24246 0.85611 0.78323 0.78608 0.79714 1.19696 1.21010 1.19861 1.57700 1.70204 1.20895 1.35186 1.21329 1.01436 0.80445 1.01004 1.01571 0.73989 0.72381 0.72385 1.93523 1.71418 1.61382 1.72622 1.93481 1.74056 1.60982 1.71045 1.57761 1.66600 1.19417 1.40235 1.21766 0.98936 0.97944 0.87793 1.19956 0.99135 0.77342 0.98169 1.19358 0.96482 1.02385 0.97184 1.20473 0.95685 1.00500 1.01793 1.25867 1.05238 1.06301 0.98243 1.83943 1.07664 1.50185 1.19724 1.25847 1.04585 1.03679 0.98261 0.93989 0.91477 0.94258 0.92636 0.94438 0.90084 0.90376 0.90852 0.88343 0.91258 0.86320 0.91091 0.85680 0.80455 0.78703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.86 8.96 71.98 0.64 -5.22 16 2 C 0.28 13.37 2.59 44.24 0.11 13.48 16 3 H 0.02 1.34 7.06 -2.39 -0.02 1.32 16 4 C -0.54 -29.21 8.37 25.60 0.21 -28.99 16 5 H 0.05 2.86 7.65 -2.91 -0.02 2.83 16 6 C 0.02 1.12 5.30 84.65 0.45 1.56 16 7 N -0.91 -50.57 11.32 21.45 0.24 -50.32 16 8 Si 0.95 43.38 29.54 68.60 2.03 45.41 16 9 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 N -1.00 -41.27 3.12 -520.44 -1.62 -42.89 16 13 C 0.10 3.62 9.44 127.77 1.21 4.83 16 14 S 2.79 110.96 6.02 -56.49 -0.34 110.62 16 15 O -1.01 -47.32 14.49 -128.00 -1.85 -49.17 16 16 O -1.01 -42.38 15.87 -128.00 -2.03 -44.41 16 17 N -1.00 -29.40 3.23 -543.24 -1.75 -31.15 16 18 C 0.08 1.69 10.70 127.77 1.37 3.05 16 19 C 0.18 4.98 5.64 85.63 0.48 5.46 16 20 C -0.14 -3.70 5.37 -20.92 -0.11 -3.81 16 21 C -0.15 -4.64 9.87 21.22 0.21 -4.44 16 22 C -0.22 -5.36 11.23 66.72 0.75 -4.61 16 23 S 0.12 2.31 23.34 -56.49 -1.32 0.99 16 24 C -0.19 -3.69 10.89 66.72 0.73 -2.96 16 25 H 0.04 1.71 6.67 -2.39 -0.02 1.70 16 26 H 0.07 3.30 6.07 -2.39 -0.01 3.28 16 27 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 29 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.08 2.71 6.44 -2.39 -0.02 2.69 16 31 H 0.08 2.21 7.85 -2.39 -0.02 2.19 16 32 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.10 1.49 7.99 -2.39 -0.02 1.47 16 34 H 0.07 1.59 7.08 -2.39 -0.02 1.57 16 35 H 0.12 2.38 8.08 -2.39 -0.02 2.36 16 36 H 0.07 2.36 7.38 -2.39 -0.02 2.34 16 37 H 0.13 4.50 7.02 -2.91 -0.02 4.48 16 38 H 0.18 3.54 8.06 -2.91 -0.02 3.51 16 39 H 0.20 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -68.68 344.73 0.45 -68.24 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 1.05 Total: 14.34 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: 6.05 Total: -21.65 kcal Atomic # 7 Polarization: -121.23 SS G_CDS: -3.14 Total: -124.37 kcal Atomic # 8 Polarization: -89.69 SS G_CDS: -3.89 Total: -93.58 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: 113.27 SS G_CDS: -1.66 Total: 111.61 kcal Total: -68.68 0.45 -68.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619748077.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.452 kcal (2) G-P(sol) polarization free energy of solvation -68.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds