Wall clock time and date at job start Tue Mar 31 2020 12:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46779 * 2 1 4 4 C 1.46507 * 119.99897 * 274.99832 * 3 2 1 5 5 C 1.50694 * 109.47369 * 281.99257 * 4 3 2 6 6 H 1.07999 * 120.00147 * 3.37476 * 5 4 3 7 7 C 1.37876 * 120.00169 * 183.36801 * 5 4 3 8 8 N 1.31519 * 119.99906 * 7.18622 * 7 5 4 9 9 Si 1.86799 * 120.00419 * 187.18202 * 7 5 4 10 10 H 1.48500 * 109.46830 * 95.18830 * 9 7 5 11 11 H 1.48498 * 109.47264 * 215.19059 * 9 7 5 12 12 H 1.48503 * 109.47021 * 335.19511 * 9 7 5 13 13 S 1.65597 * 120.00040 * 95.00436 * 3 2 1 14 14 O 1.42100 * 106.40319 * 330.66949 * 13 3 2 15 15 O 1.42102 * 106.40245 * 197.75355 * 13 3 2 16 16 N 1.65597 * 107.22065 * 84.21122 * 13 3 2 17 17 C 1.46503 * 119.99860 * 61.38726 * 16 13 3 18 18 H 1.08995 * 109.47198 * 335.04508 * 17 16 13 19 19 C 1.53002 * 109.47057 * 95.04607 * 17 16 13 20 20 C 1.50700 * 109.47052 * 215.04420 * 17 16 13 21 21 C 1.38420 * 122.53895 * 134.42289 * 20 17 16 22 22 C 1.33386 * 114.92252 * 179.72953 * 21 20 17 23 23 S 1.75880 * 109.59400 * 0.27069 * 22 21 20 24 24 C 1.33386 * 122.54296 * 314.67945 * 20 17 16 25 25 H 1.09000 * 109.46674 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46887 * 299.99890 * 1 2 3 27 27 H 1.09000 * 109.47275 * 59.99902 * 1 2 3 28 28 H 1.09001 * 109.46887 * 240.00110 * 2 1 3 29 29 H 1.09000 * 109.47275 * 120.00098 * 2 1 3 30 30 H 1.08998 * 109.46774 * 41.99390 * 4 3 2 31 31 H 1.09005 * 109.46827 * 161.99275 * 4 3 2 32 32 H 0.96995 * 120.00022 * 179.97438 * 8 7 5 33 33 H 0.96996 * 120.00336 * 241.39112 * 16 13 3 34 34 H 1.09004 * 109.46956 * 59.99932 * 19 17 16 35 35 H 1.08998 * 109.47338 * 179.97438 * 19 17 16 36 36 H 1.08996 * 109.47006 * 300.00025 * 19 17 16 37 37 H 1.08004 * 122.54007 * 359.97438 * 21 20 17 38 38 H 1.08002 * 125.20629 * 180.24794 * 22 21 20 39 39 H 1.08000 * 125.20133 * 359.96849 * 24 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 -1.2640 5 6 3.4141 1.6600 -1.9655 6 1 4.0163 0.8698 -1.5420 7 6 3.7945 2.2582 -3.1481 8 7 3.1436 3.3116 -3.5912 9 14 5.2343 1.5726 -4.1209 10 1 4.7291 0.6481 -5.1674 11 1 5.9749 2.6888 -4.7619 12 1 6.1434 0.8359 -3.2065 13 16 2.4122 2.1202 1.4286 14 8 1.5863 1.5333 2.4250 15 8 2.4385 3.5162 1.1644 16 7 3.9674 1.6839 1.7938 17 6 5.0606 2.0411 0.8863 18 1 4.6680 2.1706 -0.1222 19 6 5.7057 3.3472 1.3541 20 6 6.0926 0.9429 0.8864 21 6 6.6522 0.4470 -0.2785 22 6 7.5542 -0.5196 -0.1016 23 16 7.7294 -0.8557 1.6159 24 6 6.5324 0.3717 2.0086 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.2953 1.9048 -1.8979 31 1 2.2167 3.1785 -1.0629 32 1 3.4114 3.7327 -4.4230 33 1 4.1545 1.1919 2.6084 34 1 6.0983 3.2176 2.3627 35 1 6.5193 3.6128 0.6792 36 1 4.9592 4.1415 1.3541 37 1 6.3820 0.8174 -1.2564 38 1 8.0941 -1.0197 -0.8920 39 1 6.2068 0.6272 3.0062 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619752240.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:38 Heat of formation + Delta-G solvation = -48.831424 kcal Electronic energy + Delta-G solvation = -24087.212313 eV Core-core repulsion = 20669.279826 eV Total energy + Delta-G solvation = -3417.932487 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -38.62843 -36.61551 -36.04470 -35.17349 -34.72314 -32.77623 -29.93984 -29.72889 -28.60548 -26.67146 -24.55833 -23.19028 -21.68558 -21.57242 -19.00231 -18.61599 -17.70140 -16.83378 -16.70913 -16.43992 -15.91214 -15.34336 -14.47961 -14.18609 -13.81492 -13.62261 -13.31251 -13.09556 -12.88893 -12.64781 -12.59880 -12.22089 -12.06122 -11.97864 -11.76525 -11.70917 -11.45716 -11.27636 -11.20319 -11.11210 -11.06405 -10.84044 -10.56248 -10.39695 -10.26861 -10.02722 -9.78486 -9.16956 -8.62937 -8.54853 -8.23051 -8.06493 -6.18680 -4.24133 1.15262 1.33235 1.81187 2.11454 2.90923 3.16555 3.22923 3.27420 3.58673 4.19249 4.27458 5.00244 5.10770 5.15064 5.16960 5.41938 5.51083 5.64353 5.71093 5.75996 5.81258 5.87947 5.93570 6.13321 6.19466 6.24113 6.34573 6.42020 6.56444 6.62998 6.68907 6.73506 6.89195 7.29875 7.35329 7.45457 7.66569 7.79787 8.10799 8.80801 9.40087 10.88882 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.009675 B = 0.007840 C = 0.005422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2893.456523 B = 3570.363154 C = 5162.704638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.133 3.867 3 N -0.991 5.991 4 C 0.240 3.760 5 C -0.544 4.544 6 H 0.068 0.932 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.885 3.115 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.266 1.266 13 S 2.783 3.217 14 O -1.002 7.002 15 O -0.976 6.976 16 N -1.123 6.123 17 C 0.191 3.809 18 H 0.138 0.862 19 C -0.161 4.161 20 C -0.085 4.085 21 C -0.119 4.119 22 C -0.213 4.213 23 S 0.065 5.935 24 C -0.209 4.209 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.033 0.967 31 H 0.059 0.941 32 H 0.265 0.735 33 H 0.403 0.597 34 H 0.051 0.949 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.154 0.846 38 H 0.161 0.839 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.158 -6.893 8.159 12.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.006 3.994 3 N -0.833 5.833 4 C 0.118 3.882 5 C -0.583 4.583 6 H 0.086 0.914 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.713 3.287 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.191 1.191 13 S 2.791 3.209 14 O -0.986 6.986 15 O -0.960 6.960 16 N -0.880 5.880 17 C 0.082 3.918 18 H 0.155 0.845 19 C -0.220 4.220 20 C -0.099 4.099 21 C -0.149 4.149 22 C -0.348 4.348 23 S 0.328 5.672 24 C -0.345 4.345 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.078 0.922 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.235 0.765 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.171 0.829 38 H 0.178 0.822 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 6.428 -7.070 9.186 13.255 hybrid contribution 0.354 0.012 -1.427 1.470 sum 6.783 -7.058 7.759 12.491 Atomic orbital electron populations 1.22210 0.96993 1.01299 1.02445 1.20934 0.93567 0.82843 1.02022 1.57682 1.78611 1.22966 1.23999 1.19263 0.97146 0.92793 0.79021 1.21554 1.09173 1.20228 1.07375 0.91397 1.24960 0.96811 0.94377 0.97471 1.69949 1.40902 1.19300 1.21697 0.86741 0.82447 0.78843 0.80631 1.20669 1.21122 1.19147 1.01859 0.72560 0.73853 0.72637 1.93545 1.65965 1.79455 1.59625 1.93585 1.86495 1.30788 1.85116 1.56184 1.25274 1.73856 1.32732 1.19859 0.85133 0.90421 0.96427 0.84494 1.22259 1.01546 0.97365 1.00814 1.19136 0.99528 0.99199 0.92038 1.20491 0.96844 0.97107 1.00488 1.25519 1.06048 1.04885 0.98304 1.84029 1.41844 1.39304 1.02020 1.25286 1.03959 1.02932 1.02291 0.92488 0.92520 0.92108 0.90141 0.92236 0.94929 0.92282 0.92492 0.76473 0.93031 0.91649 0.90657 0.82904 0.82152 0.82252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 10.24 37.16 0.38 -2.31 16 2 C 0.13 2.28 6.01 -4.04 -0.02 2.26 16 3 N -0.99 -19.70 2.85 -115.66 -0.33 -20.03 16 4 C 0.24 5.64 5.38 -5.19 -0.03 5.61 16 5 C -0.54 -13.06 7.03 -34.44 -0.24 -13.30 16 6 H 0.07 1.55 7.27 -52.49 -0.38 1.17 16 7 C 0.07 1.71 5.45 -17.82 -0.10 1.62 16 8 N -0.88 -23.91 13.30 55.43 0.74 -23.17 16 9 Si 0.89 19.10 29.46 -169.99 -5.01 14.09 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.27 -5.28 5.51 56.52 0.31 -4.97 16 13 S 2.78 54.07 5.94 -107.50 -0.64 53.43 16 14 O -1.00 -20.29 17.17 -57.17 -0.98 -21.27 16 15 O -0.98 -22.09 15.89 -57.17 -0.91 -23.00 16 16 N -1.12 -18.13 5.50 -5.88 -0.03 -18.16 16 17 C 0.19 3.20 3.14 -69.08 -0.22 2.99 16 18 H 0.14 2.71 4.71 -51.93 -0.24 2.47 16 19 C -0.16 -2.50 9.47 37.16 0.35 -2.15 16 20 C -0.08 -1.30 4.84 -106.25 -0.51 -1.81 16 21 C -0.12 -1.88 9.93 -41.21 -0.41 -2.29 16 22 C -0.21 -2.87 11.23 29.04 0.33 -2.55 16 23 S 0.07 0.79 23.34 -107.50 -2.51 -1.72 16 24 C -0.21 -2.73 10.25 29.04 0.30 -2.43 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.93 7.98 -51.93 -0.41 0.52 16 27 H 0.06 0.99 8.10 -51.93 -0.42 0.57 16 28 H 0.08 1.38 8.02 -51.93 -0.42 0.96 16 29 H 0.06 0.92 7.77 -51.93 -0.40 0.52 16 30 H 0.03 0.80 8.10 -51.93 -0.42 0.38 16 31 H 0.06 1.55 6.75 -51.93 -0.35 1.20 16 32 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 33 H 0.40 5.42 7.71 -34.47 -0.27 5.16 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.29 7.65 -51.93 -0.40 0.89 16 37 H 0.15 2.66 6.29 -52.48 -0.33 2.33 16 38 H 0.16 1.84 8.06 -52.49 -0.42 1.42 16 39 H 0.16 1.75 7.53 -52.49 -0.40 1.35 16 LS Contribution 344.79 15.07 5.20 5.20 Total: -1.00 -29.03 344.79 -10.01 -39.04 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -5.36 Total: 9.97 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -0.18 Total: -14.36 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: 0.38 Total: -61.36 kcal Atomic # 8 Polarization: -42.38 SS G_CDS: -1.89 Total: -44.27 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.01 Total: 14.09 kcal Atomic # 16 Polarization: 54.86 SS G_CDS: -3.15 Total: 51.71 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.03 -10.01 -39.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619752240.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.795 kcal (2) G-P(sol) polarization free energy of solvation -29.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds