Wall clock time and date at job start Tue Mar 31 2020 12:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46779 * 2 1 4 4 C 1.46507 * 119.99897 * 274.99832 * 3 2 1 5 5 C 1.50694 * 109.47369 * 281.99257 * 4 3 2 6 6 H 1.07999 * 120.00147 * 3.37476 * 5 4 3 7 7 C 1.37876 * 120.00169 * 183.36801 * 5 4 3 8 8 N 1.31519 * 119.99906 * 7.18622 * 7 5 4 9 9 Si 1.86799 * 120.00419 * 187.18202 * 7 5 4 10 10 H 1.48500 * 109.46830 * 95.18830 * 9 7 5 11 11 H 1.48498 * 109.47264 * 215.19059 * 9 7 5 12 12 H 1.48503 * 109.47021 * 335.19511 * 9 7 5 13 13 S 1.65597 * 120.00040 * 95.00436 * 3 2 1 14 14 O 1.42100 * 106.40319 * 330.66949 * 13 3 2 15 15 O 1.42102 * 106.40245 * 197.75355 * 13 3 2 16 16 N 1.65597 * 107.22065 * 84.21122 * 13 3 2 17 17 C 1.46503 * 119.99860 * 61.38726 * 16 13 3 18 18 H 1.08995 * 109.47198 * 335.04508 * 17 16 13 19 19 C 1.53002 * 109.47057 * 95.04607 * 17 16 13 20 20 C 1.50700 * 109.47052 * 215.04420 * 17 16 13 21 21 C 1.38420 * 122.53895 * 134.42289 * 20 17 16 22 22 C 1.33386 * 114.92252 * 179.72953 * 21 20 17 23 23 S 1.75880 * 109.59400 * 0.27069 * 22 21 20 24 24 C 1.33386 * 122.54296 * 314.67945 * 20 17 16 25 25 H 1.09000 * 109.46674 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46887 * 299.99890 * 1 2 3 27 27 H 1.09000 * 109.47275 * 59.99902 * 1 2 3 28 28 H 1.09001 * 109.46887 * 240.00110 * 2 1 3 29 29 H 1.09000 * 109.47275 * 120.00098 * 2 1 3 30 30 H 1.08998 * 109.46774 * 41.99390 * 4 3 2 31 31 H 1.09005 * 109.46827 * 161.99275 * 4 3 2 32 32 H 0.96995 * 120.00022 * 179.97438 * 8 7 5 33 33 H 0.96996 * 120.00336 * 241.39112 * 16 13 3 34 34 H 1.09004 * 109.46956 * 59.99932 * 19 17 16 35 35 H 1.08998 * 109.47338 * 179.97438 * 19 17 16 36 36 H 1.08996 * 109.47006 * 300.00025 * 19 17 16 37 37 H 1.08004 * 122.54007 * 359.97438 * 21 20 17 38 38 H 1.08002 * 125.20629 * 180.24794 * 22 21 20 39 39 H 1.08000 * 125.20133 * 359.96849 * 24 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 -1.2640 5 6 3.4141 1.6600 -1.9655 6 1 4.0163 0.8698 -1.5420 7 6 3.7945 2.2582 -3.1481 8 7 3.1436 3.3116 -3.5912 9 14 5.2343 1.5726 -4.1209 10 1 4.7291 0.6481 -5.1674 11 1 5.9749 2.6888 -4.7619 12 1 6.1434 0.8359 -3.2065 13 16 2.4122 2.1202 1.4286 14 8 1.5863 1.5333 2.4250 15 8 2.4385 3.5162 1.1644 16 7 3.9674 1.6839 1.7938 17 6 5.0606 2.0411 0.8863 18 1 4.6680 2.1706 -0.1222 19 6 5.7057 3.3472 1.3541 20 6 6.0926 0.9429 0.8864 21 6 6.6522 0.4470 -0.2785 22 6 7.5542 -0.5196 -0.1016 23 16 7.7294 -0.8557 1.6159 24 6 6.5324 0.3717 2.0086 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.2953 1.9048 -1.8979 31 1 2.2167 3.1785 -1.0629 32 1 3.4114 3.7327 -4.4230 33 1 4.1545 1.1919 2.6084 34 1 6.0983 3.2176 2.3627 35 1 6.5193 3.6128 0.6792 36 1 4.9592 4.1415 1.3541 37 1 6.3820 0.8174 -1.2564 38 1 8.0941 -1.0197 -0.8920 39 1 6.2068 0.6272 3.0062 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619752240.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:37 Heat of formation + Delta-G solvation = -68.363281 kcal Electronic energy + Delta-G solvation = -24088.059278 eV Core-core repulsion = 20669.279826 eV Total energy + Delta-G solvation = -3418.779452 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.78924 -38.25933 -37.65957 -36.84667 -35.99476 -34.64657 -31.49794 -30.99291 -29.72894 -28.47052 -25.70786 -24.91021 -23.24410 -22.78740 -20.47302 -19.81553 -19.00570 -18.46885 -18.38006 -17.85648 -17.33981 -16.91013 -16.19483 -15.53025 -15.22299 -14.93563 -14.74752 -14.59055 -14.23595 -13.93868 -13.75491 -13.69389 -13.59362 -13.34066 -13.27959 -13.12001 -13.05314 -12.96073 -12.69764 -12.58742 -12.50776 -12.32364 -12.25070 -11.79933 -11.74023 -11.54653 -11.41251 -10.57075 -10.48408 -9.76526 -9.66500 -9.20990 -8.12480 -6.23438 -0.26127 0.13052 0.82225 1.08197 1.44802 1.47232 1.56055 1.73335 2.10281 2.45554 2.65663 3.18541 3.51270 3.90276 3.99031 4.11862 4.34191 4.43634 4.45585 4.47170 4.52996 4.62784 4.74616 4.77351 4.93641 5.01453 5.06648 5.18065 5.26690 5.31395 5.34113 5.43915 5.47956 5.57622 5.70480 5.81590 5.94050 6.17238 6.24522 6.88096 7.44619 8.95682 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.009675 B = 0.007840 C = 0.005422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2893.456523 B = 3570.363154 C = 5162.704638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.124 3.876 3 N -0.994 5.994 4 C 0.255 3.745 5 C -0.533 4.533 6 H 0.080 0.920 7 C 0.017 3.983 8 N -0.926 5.926 9 Si 0.943 3.057 10 H -0.282 1.282 11 H -0.293 1.293 12 H -0.238 1.238 13 S 2.796 3.204 14 O -1.008 7.008 15 O -1.013 7.013 16 N -1.107 6.107 17 C 0.191 3.809 18 H 0.104 0.896 19 C -0.159 4.159 20 C -0.103 4.103 21 C -0.147 4.147 22 C -0.214 4.214 23 S 0.125 5.875 24 C -0.207 4.207 25 H 0.089 0.911 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.015 0.985 31 H 0.025 0.975 32 H 0.263 0.737 33 H 0.419 0.581 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.130 0.870 38 H 0.179 0.821 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.166 -9.526 9.732 15.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.001 4.001 3 N -0.835 5.835 4 C 0.131 3.869 5 C -0.572 4.572 6 H 0.098 0.902 7 C -0.183 4.183 8 N -0.565 5.565 9 Si 0.769 3.231 10 H -0.208 1.208 11 H -0.219 1.219 12 H -0.162 1.162 13 S 2.805 3.195 14 O -0.992 6.992 15 O -0.996 6.996 16 N -0.868 5.868 17 C 0.082 3.918 18 H 0.122 0.878 19 C -0.218 4.218 20 C -0.117 4.117 21 C -0.178 4.178 22 C -0.349 4.349 23 S 0.388 5.612 24 C -0.343 4.343 25 H 0.108 0.892 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.033 0.967 31 H 0.043 0.957 32 H 0.072 0.928 33 H 0.254 0.746 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.147 0.853 38 H 0.197 0.803 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 8.433 -9.743 10.798 16.812 hybrid contribution -0.242 0.764 -1.806 1.976 sum 8.192 -8.979 8.992 15.119 Atomic orbital electron populations 1.22193 0.95999 1.03124 1.01366 1.21200 0.94518 0.81307 1.03113 1.57578 1.79285 1.24013 1.22652 1.18824 0.96533 0.91350 0.80194 1.21772 1.08857 1.19671 1.06909 0.90197 1.25741 0.99406 0.94530 0.98640 1.70093 1.43077 1.21081 1.22272 0.85804 0.79917 0.78048 0.79368 1.20845 1.21908 1.16178 1.01275 0.73071 0.72997 0.72202 1.93528 1.66758 1.79318 1.59569 1.93544 1.87204 1.33339 1.85559 1.55778 1.23893 1.73822 1.33335 1.19683 0.85433 0.91926 0.94723 0.87831 1.22238 1.00994 0.96087 1.02528 1.18893 1.00178 0.99766 0.92880 1.20372 0.98800 0.98853 0.99751 1.25813 1.04981 1.03823 1.00310 1.83890 1.40000 1.37392 0.99875 1.25596 1.03542 1.02507 1.02621 0.89221 0.93413 0.93349 0.90061 0.90022 0.96704 0.95714 0.92767 0.74551 0.90391 0.91152 0.92979 0.85255 0.80335 0.80044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.13 10.24 71.98 0.74 -4.39 16 2 C 0.12 4.13 6.01 86.38 0.52 4.65 16 3 N -0.99 -39.96 2.85 -519.83 -1.48 -41.44 16 4 C 0.25 12.46 5.38 85.63 0.46 12.92 16 5 C -0.53 -26.11 7.03 25.60 0.18 -25.93 16 6 H 0.08 3.66 7.27 -2.91 -0.02 3.64 16 7 C 0.02 0.86 5.45 84.65 0.46 1.32 16 8 N -0.93 -52.28 13.30 21.45 0.29 -51.99 16 9 Si 0.94 39.55 29.46 68.60 2.02 41.57 16 10 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.24 -8.83 5.51 99.48 0.55 -8.29 16 13 S 2.80 108.97 5.94 -56.49 -0.34 108.64 16 14 O -1.01 -39.86 17.17 -128.00 -2.20 -42.06 16 15 O -1.01 -47.46 15.89 -128.00 -2.03 -49.50 16 16 N -1.11 -34.48 5.50 -172.52 -0.95 -35.43 16 17 C 0.19 6.31 3.14 44.25 0.14 6.45 16 18 H 0.10 4.17 4.71 -2.39 -0.01 4.16 16 19 C -0.16 -4.88 9.47 71.98 0.68 -4.19 16 20 C -0.10 -2.94 4.84 -20.92 -0.10 -3.04 16 21 C -0.15 -4.38 9.93 21.21 0.21 -4.16 16 22 C -0.21 -5.11 11.23 66.72 0.75 -4.36 16 23 S 0.13 2.48 23.34 -56.49 -1.32 1.16 16 24 C -0.21 -4.66 10.25 66.72 0.68 -3.97 16 25 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.05 1.53 7.98 -2.39 -0.02 1.51 16 27 H 0.05 1.58 8.10 -2.39 -0.02 1.56 16 28 H 0.08 2.69 8.02 -2.39 -0.02 2.67 16 29 H 0.08 2.35 7.77 -2.39 -0.02 2.33 16 30 H 0.01 0.77 8.10 -2.39 -0.02 0.75 16 31 H 0.02 1.38 6.75 -2.38 -0.02 1.37 16 32 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 33 H 0.42 10.25 7.71 -96.75 -0.75 9.50 16 34 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 35 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.05 1.82 7.65 -2.39 -0.02 1.80 16 37 H 0.13 4.40 6.29 -2.91 -0.02 4.38 16 38 H 0.18 3.47 8.06 -2.91 -0.02 3.45 16 39 H 0.18 3.17 7.53 -2.91 -0.02 3.15 16 Total: -1.00 -64.21 344.79 -1.13 -65.33 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: 0.16 Total: 28.43 kcal Atomic # 6 Polarization: -29.43 SS G_CDS: 4.72 Total: -24.71 kcal Atomic # 7 Polarization: -126.72 SS G_CDS: -2.15 Total: -128.86 kcal Atomic # 8 Polarization: -87.33 SS G_CDS: -4.23 Total: -91.56 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.02 Total: 41.57 kcal Atomic # 16 Polarization: 111.45 SS G_CDS: -1.65 Total: 109.80 kcal Total: -64.21 -1.13 -65.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619752240.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.030 kcal (2) G-P(sol) polarization free energy of solvation -64.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds