Wall clock time and date at job start Tue Mar 31 2020 12:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47474 * 2 1 4 4 C 1.46497 * 120.00357 * 275.28008 * 3 2 1 5 5 C 1.50699 * 109.46956 * 275.18174 * 4 3 2 6 6 H 1.08001 * 119.99739 * 4.83171 * 5 4 3 7 7 C 1.37875 * 120.00090 * 184.83586 * 5 4 3 8 8 N 1.31519 * 120.00117 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00160 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47268 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47392 * 119.99595 * 9 7 5 12 12 H 1.48497 * 109.47293 * 239.99615 * 9 7 5 13 13 S 1.65600 * 119.99412 * 94.99894 * 3 2 1 14 14 O 1.42103 * 106.40202 * 209.19079 * 13 3 2 15 15 O 1.42095 * 106.40836 * 342.11646 * 13 3 2 16 16 N 1.65600 * 107.21716 * 95.65591 * 13 3 2 17 17 C 1.46503 * 119.99979 * 295.92902 * 16 13 3 18 18 H 1.08999 * 109.47073 * 23.76234 * 17 16 13 19 19 C 1.53003 * 109.47154 * 263.76804 * 17 16 13 20 20 C 1.50696 * 109.47204 * 143.76903 * 17 16 13 21 21 C 1.38431 * 122.53649 * 219.73686 * 20 17 16 22 22 C 1.33386 * 114.91906 * 179.76413 * 21 20 17 23 23 S 1.75890 * 109.59248 * 0.47395 * 22 21 20 24 24 C 1.33387 * 122.54113 * 40.02317 * 20 17 16 25 25 H 1.09000 * 109.47206 * 59.99518 * 1 2 3 26 26 H 1.08993 * 109.47115 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47099 * 300.00165 * 1 2 3 28 28 H 1.09002 * 109.47093 * 240.00388 * 2 1 3 29 29 H 1.09000 * 109.47206 * 120.00481 * 2 1 3 30 30 H 1.09002 * 109.47010 * 35.18212 * 4 3 2 31 31 H 1.08993 * 109.47115 * 155.18211 * 4 3 2 32 32 H 0.96999 * 120.00526 * 180.02562 * 8 7 5 33 33 H 0.96997 * 120.00482 * 115.92569 * 16 13 3 34 34 H 1.09007 * 109.46924 * 65.05541 * 19 17 16 35 35 H 1.08997 * 109.47201 * 185.05823 * 19 17 16 36 36 H 1.09004 * 109.47103 * 305.06286 * 19 17 16 37 37 H 1.07997 * 122.54254 * 359.97438 * 21 20 17 38 38 H 1.08002 * 125.20296 * 180.21006 * 22 21 20 39 39 H 1.07996 * 125.20456 * 359.97438 * 24 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1526 2.1108 -1.2633 5 6 3.4844 1.7884 -1.8905 6 1 4.1295 1.0496 -1.4384 7 6 3.8793 2.4366 -3.0415 8 7 3.0935 3.3360 -3.5923 9 14 5.5298 2.0365 -3.8194 10 1 6.2186 0.9976 -3.0123 11 1 5.3171 1.5313 -5.1996 12 1 6.3660 3.2628 -3.8646 13 16 2.4122 2.1200 1.4288 14 8 2.1780 3.5089 1.2402 15 8 1.7933 1.3601 2.4576 16 7 4.0458 1.9455 1.6369 17 6 4.6243 0.6100 1.8051 18 1 3.9598 -0.1321 1.3627 19 6 4.7987 0.3139 3.2960 20 6 5.9661 0.5541 1.1216 21 6 6.3918 -0.5521 0.4064 22 6 7.6029 -0.4360 -0.1402 23 16 8.2813 1.1373 0.2579 24 6 6.8359 1.5644 1.1645 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.3510 1.8154 -1.9403 31 1 2.0907 3.1821 -1.0724 32 1 3.3712 3.7918 -4.4023 33 1 4.6197 2.7274 1.6473 34 1 3.8200 0.2656 3.7738 35 1 5.3107 -0.6404 3.4195 36 1 5.3893 1.1056 3.7571 37 1 5.7876 -1.4405 0.2964 38 1 8.0939 -1.1938 -0.7327 39 1 6.6768 2.5016 1.6770 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619752241.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:41 Heat of formation + Delta-G solvation = -47.980154 kcal Electronic energy + Delta-G solvation = -24003.021733 eV Core-core repulsion = 20585.126159 eV Total energy + Delta-G solvation = -3417.895573 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -38.71056 -36.64313 -36.01158 -35.19926 -34.82616 -32.68864 -29.97133 -29.71981 -28.76633 -26.60319 -24.65960 -23.12936 -21.76134 -21.66133 -19.10540 -18.62840 -17.70999 -16.83294 -16.69604 -16.25695 -16.23193 -15.24142 -14.49014 -14.21061 -13.92623 -13.71670 -13.37476 -13.17938 -12.87579 -12.75245 -12.60551 -12.26883 -12.09672 -11.94823 -11.86828 -11.66189 -11.47937 -11.38961 -11.33381 -11.13395 -11.04519 -10.90289 -10.55005 -10.48461 -10.34417 -10.04919 -9.72622 -9.23819 -8.62039 -8.47372 -8.22462 -8.03032 -6.08404 -4.13888 1.18559 1.32992 1.83162 2.14197 2.85867 3.25249 3.34105 3.37860 3.56147 4.17663 4.39679 4.82015 4.99553 5.14515 5.21093 5.26379 5.38986 5.43919 5.45908 5.63860 5.73235 5.76681 5.81829 5.92056 6.02560 6.10087 6.25003 6.29624 6.33458 6.56742 6.64090 6.66568 6.69012 7.24195 7.41500 7.49158 7.68866 7.89571 8.18558 8.92320 9.52421 10.99619 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.010080 B = 0.008123 C = 0.005362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.144387 B = 3446.093581 C = 5220.705280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.127 3.873 3 N -0.991 5.991 4 C 0.246 3.754 5 C -0.531 4.531 6 H 0.065 0.935 7 C 0.064 3.936 8 N -0.891 5.891 9 Si 0.886 3.114 10 H -0.267 1.267 11 H -0.286 1.286 12 H -0.284 1.284 13 S 2.786 3.214 14 O -0.982 6.982 15 O -0.998 6.998 16 N -1.117 6.117 17 C 0.221 3.779 18 H 0.089 0.911 19 C -0.164 4.164 20 C -0.095 4.095 21 C -0.119 4.119 22 C -0.210 4.210 23 S 0.082 5.918 24 C -0.196 4.196 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.035 0.965 31 H 0.051 0.949 32 H 0.262 0.738 33 H 0.411 0.589 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.141 0.859 38 H 0.161 0.839 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.219 -8.361 9.592 14.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.000 4.000 3 N -0.833 5.833 4 C 0.124 3.876 5 C -0.571 4.571 6 H 0.083 0.917 7 C -0.138 4.138 8 N -0.530 5.530 9 Si 0.714 3.286 10 H -0.192 1.192 11 H -0.212 1.212 12 H -0.210 1.210 13 S 2.794 3.206 14 O -0.966 6.966 15 O -0.982 6.982 16 N -0.875 5.875 17 C 0.111 3.889 18 H 0.107 0.893 19 C -0.223 4.223 20 C -0.109 4.109 21 C -0.150 4.150 22 C -0.345 4.345 23 S 0.346 5.654 24 C -0.332 4.332 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.245 0.755 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.158 0.842 38 H 0.179 0.821 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.859 -7.209 9.686 13.887 hybrid contribution 0.198 -0.639 -0.845 1.078 sum 7.056 -7.849 8.841 13.768 Atomic orbital electron populations 1.22195 0.96931 1.01384 1.02340 1.21035 0.93767 0.83072 1.02082 1.57697 1.78574 1.22740 1.24255 1.19182 0.97236 0.92215 0.78966 1.21587 1.03084 1.22892 1.09504 0.91682 1.24927 0.97062 0.94843 0.96992 1.69948 1.36725 1.25734 1.20572 0.86614 0.84291 0.78564 0.79178 1.19154 1.21184 1.20976 1.01718 0.72761 0.73091 0.73026 1.93589 1.84153 1.32425 1.86469 1.93538 1.75017 1.73191 1.56437 1.56109 1.28536 1.12908 1.89903 1.19142 0.90981 0.84175 0.94644 0.89278 1.22313 1.03075 1.01852 0.95063 1.18953 0.96945 0.94165 1.00837 1.19992 0.96019 0.99712 0.99310 1.25471 1.00421 1.00608 1.08021 1.84133 1.19512 1.11723 1.50056 1.25239 0.97384 1.03493 1.07055 0.92051 0.92322 0.92791 0.90243 0.91757 0.94701 0.93129 0.92777 0.75528 0.90911 0.91671 0.92126 0.84164 0.82127 0.82077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.61 10.23 37.16 0.38 -2.23 16 2 C 0.13 2.13 5.83 -4.04 -0.02 2.11 16 3 N -0.99 -19.90 2.83 -115.67 -0.33 -20.23 16 4 C 0.25 6.02 5.45 -5.20 -0.03 5.99 16 5 C -0.53 -13.67 9.38 -34.44 -0.32 -14.00 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -25.57 13.29 55.43 0.74 -24.83 16 9 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 10 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 S 2.79 54.30 6.00 -107.50 -0.65 53.66 16 14 O -0.98 -22.78 16.81 -57.17 -0.96 -23.74 16 15 O -1.00 -19.50 16.42 -57.17 -0.94 -20.43 16 16 N -1.12 -18.24 5.48 -5.88 -0.03 -18.27 16 17 C 0.22 3.14 3.11 -69.08 -0.21 2.93 16 18 H 0.09 1.25 6.80 -51.93 -0.35 0.90 16 19 C -0.16 -1.96 9.50 37.16 0.35 -1.61 16 20 C -0.10 -1.37 4.86 -106.25 -0.52 -1.89 16 21 C -0.12 -1.65 9.95 -41.21 -0.41 -2.06 16 22 C -0.21 -2.80 11.23 29.04 0.33 -2.47 16 23 S 0.08 1.11 23.34 -107.50 -2.51 -1.40 16 24 C -0.20 -2.75 10.31 29.04 0.30 -2.45 16 25 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.08 1.32 8.11 -51.93 -0.42 0.90 16 29 H 0.06 0.95 6.61 -51.93 -0.34 0.61 16 30 H 0.03 0.89 8.09 -51.93 -0.42 0.47 16 31 H 0.05 1.39 6.98 -51.93 -0.36 1.02 16 32 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.41 6.26 7.47 -34.47 -0.26 6.00 16 34 H 0.07 0.93 7.86 -51.92 -0.41 0.52 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.16 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.16 1.98 7.26 -52.49 -0.38 1.60 16 LS Contribution 352.44 15.07 5.31 5.31 Total: -1.00 -31.95 352.44 -10.09 -42.04 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -5.45 Total: 6.06 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -0.25 Total: -14.03 kcal Atomic # 7 Polarization: -63.71 SS G_CDS: 0.38 Total: -63.33 kcal Atomic # 8 Polarization: -42.28 SS G_CDS: -1.90 Total: -44.18 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 55.41 SS G_CDS: -3.15 Total: 52.26 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.95 -10.09 -42.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619752241.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.942 kcal (2) G-P(sol) polarization free energy of solvation -31.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds