Wall clock time and date at job start Tue Mar 31 2020 12:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47474 * 2 1 4 4 C 1.46497 * 120.00357 * 275.28008 * 3 2 1 5 5 C 1.50699 * 109.46956 * 275.18174 * 4 3 2 6 6 H 1.08001 * 119.99739 * 4.83171 * 5 4 3 7 7 C 1.37875 * 120.00090 * 184.83586 * 5 4 3 8 8 N 1.31519 * 120.00117 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00160 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47268 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47392 * 119.99595 * 9 7 5 12 12 H 1.48497 * 109.47293 * 239.99615 * 9 7 5 13 13 S 1.65600 * 119.99412 * 94.99894 * 3 2 1 14 14 O 1.42103 * 106.40202 * 209.19079 * 13 3 2 15 15 O 1.42095 * 106.40836 * 342.11646 * 13 3 2 16 16 N 1.65600 * 107.21716 * 95.65591 * 13 3 2 17 17 C 1.46503 * 119.99979 * 295.92902 * 16 13 3 18 18 H 1.08999 * 109.47073 * 23.76234 * 17 16 13 19 19 C 1.53003 * 109.47154 * 263.76804 * 17 16 13 20 20 C 1.50696 * 109.47204 * 143.76903 * 17 16 13 21 21 C 1.38431 * 122.53649 * 219.73686 * 20 17 16 22 22 C 1.33386 * 114.91906 * 179.76413 * 21 20 17 23 23 S 1.75890 * 109.59248 * 0.47395 * 22 21 20 24 24 C 1.33387 * 122.54113 * 40.02317 * 20 17 16 25 25 H 1.09000 * 109.47206 * 59.99518 * 1 2 3 26 26 H 1.08993 * 109.47115 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47099 * 300.00165 * 1 2 3 28 28 H 1.09002 * 109.47093 * 240.00388 * 2 1 3 29 29 H 1.09000 * 109.47206 * 120.00481 * 2 1 3 30 30 H 1.09002 * 109.47010 * 35.18212 * 4 3 2 31 31 H 1.08993 * 109.47115 * 155.18211 * 4 3 2 32 32 H 0.96999 * 120.00526 * 180.02562 * 8 7 5 33 33 H 0.96997 * 120.00482 * 115.92569 * 16 13 3 34 34 H 1.09007 * 109.46924 * 65.05541 * 19 17 16 35 35 H 1.08997 * 109.47201 * 185.05823 * 19 17 16 36 36 H 1.09004 * 109.47103 * 305.06286 * 19 17 16 37 37 H 1.07997 * 122.54254 * 359.97438 * 21 20 17 38 38 H 1.08002 * 125.20296 * 180.21006 * 22 21 20 39 39 H 1.07996 * 125.20456 * 359.97438 * 24 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1526 2.1108 -1.2633 5 6 3.4844 1.7884 -1.8905 6 1 4.1295 1.0496 -1.4384 7 6 3.8793 2.4366 -3.0415 8 7 3.0935 3.3360 -3.5923 9 14 5.5298 2.0365 -3.8194 10 1 6.2186 0.9976 -3.0123 11 1 5.3171 1.5313 -5.1996 12 1 6.3660 3.2628 -3.8646 13 16 2.4122 2.1200 1.4288 14 8 2.1780 3.5089 1.2402 15 8 1.7933 1.3601 2.4576 16 7 4.0458 1.9455 1.6369 17 6 4.6243 0.6100 1.8051 18 1 3.9598 -0.1321 1.3627 19 6 4.7987 0.3139 3.2960 20 6 5.9661 0.5541 1.1216 21 6 6.3918 -0.5521 0.4064 22 6 7.6029 -0.4360 -0.1402 23 16 8.2813 1.1373 0.2579 24 6 6.8359 1.5644 1.1645 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.3510 1.8154 -1.9403 31 1 2.0907 3.1821 -1.0724 32 1 3.3712 3.7918 -4.4023 33 1 4.6197 2.7274 1.6473 34 1 3.8200 0.2656 3.7738 35 1 5.3107 -0.6404 3.4195 36 1 5.3893 1.1056 3.7571 37 1 5.7876 -1.4405 0.2964 38 1 8.0939 -1.1938 -0.7327 39 1 6.6768 2.5016 1.6770 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619752241.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:40 Heat of formation + Delta-G solvation = -69.524453 kcal Electronic energy + Delta-G solvation = -24003.955964 eV Core-core repulsion = 20585.126159 eV Total energy + Delta-G solvation = -3418.829804 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.78772 -38.26927 -37.63901 -36.85545 -35.99288 -34.65945 -31.51123 -30.90577 -29.78104 -28.46430 -25.69293 -24.90222 -23.25504 -22.80626 -20.51180 -19.73786 -19.01008 -18.54363 -18.29445 -17.89194 -17.52697 -16.82348 -16.20024 -15.53086 -15.25436 -14.91306 -14.76453 -14.66699 -14.19263 -13.91772 -13.76461 -13.69174 -13.55082 -13.30833 -13.26790 -13.13520 -13.05417 -13.00751 -12.75789 -12.65530 -12.51391 -12.26724 -12.20785 -12.06960 -11.74628 -11.59302 -11.47410 -10.60459 -10.49399 -9.76857 -9.64105 -9.24660 -8.14253 -6.25727 -0.23863 0.16294 0.81206 1.11844 1.39372 1.43136 1.53973 1.76355 2.10284 2.44103 2.65723 3.18582 3.47964 3.76531 3.99119 4.11006 4.20491 4.36891 4.40373 4.47208 4.53564 4.60247 4.73974 4.75908 4.96381 5.00543 5.03668 5.17152 5.24505 5.30146 5.35621 5.43256 5.52098 5.57266 5.61410 5.80054 5.93878 6.14927 6.17079 6.88079 7.44308 8.94067 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.010080 B = 0.008123 C = 0.005362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.144387 B = 3446.093581 C = 5220.705280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.117 3.883 3 N -0.995 5.995 4 C 0.262 3.738 5 C -0.524 4.524 6 H 0.075 0.925 7 C 0.012 3.988 8 N -0.931 5.931 9 Si 0.945 3.055 10 H -0.251 1.251 11 H -0.284 1.284 12 H -0.288 1.288 13 S 2.799 3.201 14 O -1.024 7.024 15 O -0.997 6.997 16 N -1.111 6.111 17 C 0.215 3.785 18 H 0.093 0.907 19 C -0.158 4.158 20 C -0.104 4.104 21 C -0.133 4.133 22 C -0.214 4.214 23 S 0.080 5.920 24 C -0.211 4.211 25 H 0.046 0.954 26 H 0.092 0.908 27 H 0.045 0.955 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.019 0.981 31 H 0.015 0.985 32 H 0.262 0.738 33 H 0.416 0.584 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.159 0.841 38 H 0.183 0.817 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.559 -10.501 10.188 16.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.008 4.008 3 N -0.836 5.836 4 C 0.138 3.862 5 C -0.563 4.563 6 H 0.093 0.907 7 C -0.187 4.187 8 N -0.572 5.572 9 Si 0.771 3.229 10 H -0.174 1.174 11 H -0.211 1.211 12 H -0.214 1.214 13 S 2.808 3.192 14 O -1.009 7.009 15 O -0.981 6.981 16 N -0.872 5.872 17 C 0.105 3.895 18 H 0.110 0.890 19 C -0.218 4.218 20 C -0.118 4.118 21 C -0.164 4.164 22 C -0.349 4.349 23 S 0.344 5.656 24 C -0.347 4.347 25 H 0.065 0.935 26 H 0.111 0.889 27 H 0.064 0.936 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.037 0.963 31 H 0.033 0.967 32 H 0.071 0.929 33 H 0.251 0.749 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.176 0.824 38 H 0.201 0.799 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 8.195 -9.382 10.306 16.168 hybrid contribution -0.221 -0.015 -0.966 0.991 sum 7.974 -9.397 9.339 15.463 Atomic orbital electron populations 1.22194 0.96021 1.03286 1.01234 1.21338 0.94675 0.81320 1.03452 1.57592 1.79330 1.23957 1.22691 1.18693 0.96470 0.90659 0.80347 1.21844 1.03276 1.22220 1.08999 0.90662 1.25716 1.00271 0.94881 0.97826 1.70077 1.38677 1.27204 1.21222 0.85676 0.80382 0.78426 0.78422 1.17429 1.21051 1.21436 1.01158 0.73392 0.71935 0.72747 1.93531 1.85237 1.35139 1.86948 1.93533 1.75611 1.72860 1.56049 1.55882 1.27395 1.14357 1.89549 1.19397 0.91018 0.82754 0.96296 0.88951 1.22271 1.03042 1.03261 0.93183 1.19061 0.96862 0.94668 1.01248 1.20253 0.96559 1.00235 0.99347 1.25832 1.00381 1.00769 1.07893 1.84144 1.19345 1.12225 1.49933 1.25492 0.97718 1.04050 1.07435 0.93495 0.88936 0.93557 0.89926 0.89228 0.96268 0.96721 0.92879 0.74911 0.91672 0.89542 0.91458 0.82396 0.79936 0.81174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.95 10.23 71.98 0.74 -4.21 16 2 C 0.12 3.73 5.83 86.38 0.50 4.24 16 3 N -0.99 -39.54 2.83 -519.86 -1.47 -41.01 16 4 C 0.26 13.02 5.45 85.63 0.47 13.49 16 5 C -0.52 -26.73 9.38 25.60 0.24 -26.49 16 6 H 0.08 3.63 7.81 -2.91 -0.02 3.60 16 7 C 0.01 0.64 5.46 84.65 0.46 1.10 16 8 N -0.93 -54.26 13.29 21.45 0.28 -53.98 16 9 Si 0.95 42.28 29.54 68.60 2.03 44.30 16 10 H -0.25 -10.45 7.11 99.48 0.71 -9.74 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 12 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 13 S 2.80 108.00 6.00 -56.49 -0.34 107.66 16 14 O -1.02 -48.49 16.81 -128.00 -2.15 -50.65 16 15 O -1.00 -37.65 16.42 -128.00 -2.10 -39.75 16 16 N -1.11 -35.01 5.48 -172.52 -0.95 -35.96 16 17 C 0.21 5.63 3.11 44.24 0.14 5.77 16 18 H 0.09 2.35 6.80 -2.39 -0.02 2.33 16 19 C -0.16 -3.39 9.50 71.98 0.68 -2.70 16 20 C -0.10 -2.76 4.86 -20.92 -0.10 -2.86 16 21 C -0.13 -3.28 9.95 21.22 0.21 -3.07 16 22 C -0.21 -5.05 11.23 66.72 0.75 -4.30 16 23 S 0.08 1.99 23.34 -56.49 -1.32 0.67 16 24 C -0.21 -5.53 10.31 66.72 0.69 -4.84 16 25 H 0.05 1.49 8.12 -2.39 -0.02 1.47 16 26 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.05 1.41 8.14 -2.39 -0.02 1.40 16 28 H 0.08 2.58 8.11 -2.39 -0.02 2.56 16 29 H 0.09 2.40 6.61 -2.39 -0.02 2.38 16 30 H 0.02 1.01 8.09 -2.39 -0.02 0.99 16 31 H 0.01 0.84 6.98 -2.39 -0.02 0.82 16 32 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 33 H 0.42 12.36 7.47 -96.75 -0.72 11.64 16 34 H 0.06 1.50 7.86 -2.38 -0.02 1.49 16 35 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 38 H 0.18 3.36 8.06 -2.91 -0.02 3.34 16 39 H 0.17 3.96 7.26 -2.91 -0.02 3.93 16 Total: -1.00 -67.88 352.44 -0.90 -68.78 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: 0.33 Total: 23.80 kcal Atomic # 6 Polarization: -28.66 SS G_CDS: 4.78 Total: -23.88 kcal Atomic # 7 Polarization: -128.82 SS G_CDS: -2.13 Total: -130.94 kcal Atomic # 8 Polarization: -86.14 SS G_CDS: -4.25 Total: -90.40 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Atomic # 16 Polarization: 109.99 SS G_CDS: -1.66 Total: 108.33 kcal Total: -67.88 -0.90 -68.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619752241.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.742 kcal (2) G-P(sol) polarization free energy of solvation -67.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds