Wall clock time and date at job start Tue Mar 31 2020 12:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47389 * 2 1 4 4 C 1.50707 * 109.46791 * 240.00364 * 2 1 3 5 5 H 1.08001 * 119.99973 * 275.00215 * 4 2 1 6 6 C 1.37872 * 120.00170 * 94.99905 * 4 2 1 7 7 N 1.31512 * 120.00258 * 184.90465 * 6 4 2 8 8 Si 1.86802 * 119.99982 * 4.90882 * 6 4 2 9 9 H 1.48508 * 109.46899 * 84.81552 * 8 6 4 10 10 H 1.48490 * 109.47410 * 204.81921 * 8 6 4 11 11 H 1.48507 * 109.46926 * 324.82148 * 8 6 4 12 12 N 1.46500 * 109.46992 * 120.00693 * 2 1 3 13 13 C 1.46491 * 120.00343 * 60.00107 * 12 2 1 14 14 S 1.65607 * 119.99325 * 239.99250 * 12 2 1 15 15 O 1.42097 * 106.40282 * 336.46367 * 14 12 2 16 16 O 1.42101 * 106.39617 * 203.54058 * 14 12 2 17 17 N 1.65605 * 107.21253 * 90.00454 * 14 12 2 18 18 C 1.46499 * 120.00052 * 64.99816 * 17 14 12 19 19 H 1.09006 * 109.47225 * 24.99829 * 18 17 14 20 20 C 1.52995 * 109.47177 * 264.99565 * 18 17 14 21 21 C 1.50699 * 109.46835 * 144.99710 * 18 17 14 22 22 C 1.38428 * 122.53928 * 219.73874 * 21 18 17 23 23 C 1.33387 * 114.92413 * 179.76166 * 22 21 18 24 24 S 1.75889 * 109.58974 * 0.47789 * 23 22 21 25 25 C 1.33381 * 122.54217 * 40.02506 * 21 18 17 26 26 H 1.09003 * 109.47372 * 55.08799 * 1 2 3 27 27 H 1.08998 * 109.47709 * 175.09127 * 1 2 3 28 28 H 1.09004 * 109.46734 * 295.08770 * 1 2 3 29 29 H 0.97001 * 120.00187 * 179.97438 * 7 6 4 30 30 H 1.09009 * 109.46956 * 269.99523 * 13 12 2 31 31 H 1.08999 * 109.47532 * 29.99274 * 13 12 2 32 32 H 1.09002 * 109.47197 * 149.99717 * 13 12 2 33 33 H 0.97002 * 119.99698 * 244.99184 * 17 14 12 34 34 H 1.09000 * 109.47109 * 179.97438 * 20 18 17 35 35 H 1.09006 * 109.47259 * 300.00243 * 20 18 17 36 36 H 1.09000 * 109.46974 * 60.00144 * 20 18 17 37 37 H 1.08003 * 122.53952 * 359.97438 * 22 21 18 38 38 H 1.07999 * 125.20985 * 180.20082 * 23 22 21 39 39 H 1.07999 * 125.20595 * 359.97438 * 25 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.1354 -1.7854 -1.2292 6 6 2.3601 0.0121 -2.3581 7 7 2.7060 -0.6130 -3.4623 8 14 2.3133 1.8791 -2.3175 9 1 3.5987 2.3950 -1.7818 10 1 2.1058 2.3992 -3.6928 11 1 1.1981 2.3274 -1.4453 12 7 2.0183 -0.6908 1.1961 13 6 1.6645 -2.0933 1.4278 14 16 2.9705 0.1140 2.2861 15 8 3.5795 1.1828 1.5747 16 8 3.7119 -0.8792 2.9812 17 7 1.9608 0.8088 3.3998 18 6 1.1511 -0.0355 4.2816 19 1 1.6298 -1.0084 4.3933 20 6 -0.2413 -0.2189 3.6748 21 6 1.0279 0.6217 5.6321 22 6 1.0833 -0.0934 6.8161 23 6 0.9626 0.6413 7.9228 24 16 0.7527 2.3326 7.4878 25 6 0.8516 1.9359 5.7771 26 1 -0.3634 0.5882 -0.8427 27 1 -0.3634 -1.0238 -0.0879 28 1 -0.3633 0.4358 0.9308 29 1 2.9363 -0.1047 -4.2557 30 1 0.7376 -2.1445 1.9992 31 1 1.5294 -2.5969 0.4706 32 1 2.4629 -2.5820 1.9861 33 1 1.9056 1.7748 3.4682 34 1 -0.8436 -0.8474 4.3307 35 1 -0.7200 0.7540 3.5631 36 1 -0.1522 -0.6942 2.6980 37 1 1.2177 -1.1647 6.8419 38 1 0.9854 0.2562 8.9315 39 1 0.7809 2.6476 4.9680 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619752255.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:48 Heat of formation + Delta-G solvation = -63.222302 kcal Electronic energy + Delta-G solvation = -23617.126604 eV Core-core repulsion = 20198.570082 eV Total energy + Delta-G solvation = -3418.556523 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.84822 -38.36480 -37.99594 -36.91523 -36.06708 -34.47966 -31.63778 -30.97945 -29.82854 -27.28759 -26.97061 -25.68769 -22.88290 -22.40767 -20.42147 -19.79862 -19.27554 -19.12974 -18.40222 -17.81605 -17.37939 -16.94202 -16.14056 -15.45485 -15.15762 -15.10896 -14.78062 -14.49044 -14.42107 -14.21019 -13.74505 -13.70138 -13.55546 -13.41357 -13.25686 -13.20406 -13.11646 -13.01740 -12.86135 -12.57827 -12.52802 -12.34514 -12.24661 -11.94591 -11.75627 -11.53277 -11.23469 -10.75389 -10.59523 -9.72869 -9.64578 -9.28081 -8.31314 -6.33919 -0.38423 0.11307 0.77915 1.09125 1.30140 1.40298 1.43514 1.72857 2.05533 2.32697 2.61609 3.09073 3.40083 3.75947 4.00961 4.12796 4.21402 4.34000 4.39144 4.51068 4.58823 4.70300 4.72942 4.83003 4.85753 4.98845 5.00101 5.05167 5.18972 5.22030 5.38934 5.44207 5.48986 5.53501 5.58232 5.62295 5.92231 6.13243 6.35558 6.73138 7.31553 8.84417 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.023946 B = 0.004072 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.995996 B = 6874.243231 C = 7059.835370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.238 3.762 3 H 0.044 0.956 4 C -0.516 4.516 5 H 0.053 0.947 6 C 0.023 3.977 7 N -0.938 5.938 8 Si 0.911 3.089 9 H -0.282 1.282 10 H -0.280 1.280 11 H -0.232 1.232 12 N -0.989 5.989 13 C 0.087 3.913 14 S 2.789 3.211 15 O -1.019 7.019 16 O -1.009 7.009 17 N -1.112 6.112 18 C 0.206 3.794 19 H 0.097 0.903 20 C -0.170 4.170 21 C -0.109 4.109 22 C -0.141 4.141 23 C -0.209 4.209 24 S 0.102 5.898 25 C -0.216 4.216 26 H 0.046 0.954 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.266 0.734 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.419 0.581 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.157 0.843 38 H 0.188 0.812 39 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.701 3.481 23.278 25.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.133 3.867 3 H 0.061 0.939 4 C -0.556 4.556 5 H 0.071 0.929 6 C -0.176 4.176 7 N -0.578 5.578 8 Si 0.736 3.264 9 H -0.209 1.209 10 H -0.205 1.205 11 H -0.155 1.155 12 N -0.830 5.830 13 C -0.059 4.059 14 S 2.799 3.201 15 O -1.003 7.003 16 O -0.992 6.992 17 N -0.874 5.874 18 C 0.097 3.903 19 H 0.115 0.885 20 C -0.229 4.229 21 C -0.123 4.123 22 C -0.171 4.171 23 C -0.344 4.344 24 S 0.366 5.634 25 C -0.352 4.352 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.255 0.745 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.174 0.826 38 H 0.205 0.795 39 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -8.871 4.697 23.940 25.960 hybrid contribution 0.377 -0.193 -1.519 1.577 sum -8.493 4.505 22.421 24.395 Atomic orbital electron populations 1.22149 0.95131 1.02057 1.00699 1.18935 0.93377 0.92003 0.82393 0.93853 1.21485 1.42885 0.95009 0.96191 0.92860 1.25703 0.94321 1.02355 0.95240 1.70005 1.47683 1.37576 1.02559 0.86283 0.80277 0.81908 0.77952 1.20855 1.20549 1.15500 1.57593 1.69922 1.21073 1.34456 1.21596 1.01039 0.80539 1.02677 1.01431 0.73701 0.72477 0.72539 1.93547 1.75844 1.57527 1.73377 1.93507 1.69881 1.61245 1.74573 1.55958 1.61853 1.17923 1.51713 1.19508 0.92575 0.92829 0.85393 0.88517 1.22469 0.94807 1.03622 1.02021 1.19030 1.04183 0.93587 0.95529 1.20276 1.03807 1.02420 0.90632 1.25913 1.09056 0.95733 1.03708 1.84254 1.71375 1.08452 0.99360 1.25597 1.09893 0.99429 1.00309 0.93488 0.92135 0.91537 0.92449 0.90031 0.91433 0.91284 0.74484 0.89499 0.91365 0.91031 0.82594 0.79513 0.81094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.94 8.91 71.98 0.64 -4.30 16 2 C 0.24 10.33 2.28 44.25 0.10 10.43 16 3 H 0.04 2.01 4.06 -2.39 -0.01 2.00 16 4 C -0.52 -27.97 8.72 25.60 0.22 -27.75 16 5 H 0.05 3.13 6.82 -2.91 -0.02 3.11 16 6 C 0.02 1.32 5.47 84.65 0.46 1.78 16 7 N -0.94 -57.63 13.96 21.45 0.30 -57.33 16 8 Si 0.91 44.42 26.99 68.60 1.85 46.27 16 9 H -0.28 -14.49 7.11 99.48 0.71 -13.78 16 10 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 11 H -0.23 -9.99 6.82 99.48 0.68 -9.31 16 12 N -0.99 -37.07 2.79 -520.45 -1.45 -38.52 16 13 C 0.09 2.73 9.57 127.77 1.22 3.95 16 14 S 2.79 103.01 6.12 -56.49 -0.35 102.66 16 15 O -1.02 -46.35 16.70 -128.00 -2.14 -48.48 16 16 O -1.01 -40.30 16.08 -128.00 -2.06 -42.35 16 17 N -1.11 -28.70 5.49 -172.53 -0.95 -29.65 16 18 C 0.21 4.30 3.23 44.24 0.14 4.44 16 19 H 0.10 2.06 7.45 -2.38 -0.02 2.05 16 20 C -0.17 -2.98 9.41 71.98 0.68 -2.31 16 21 C -0.11 -2.06 4.86 -20.92 -0.10 -2.16 16 22 C -0.14 -2.33 9.95 21.22 0.21 -2.11 16 23 C -0.21 -2.97 11.23 66.72 0.75 -2.22 16 24 S 0.10 1.55 23.34 -56.49 -1.32 0.23 16 25 C -0.22 -3.82 10.30 66.72 0.69 -3.13 16 26 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.06 2.03 7.83 -2.39 -0.02 2.01 16 28 H 0.07 1.84 7.05 -2.39 -0.02 1.82 16 29 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 30 H 0.08 1.88 6.22 -2.38 -0.01 1.87 16 31 H 0.07 2.38 6.56 -2.39 -0.02 2.36 16 32 H 0.07 2.12 7.02 -2.39 -0.02 2.10 16 33 H 0.42 9.34 7.45 -96.74 -0.72 8.62 16 34 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.07 1.39 4.32 -2.39 -0.01 1.38 16 37 H 0.16 2.08 8.06 -2.91 -0.02 2.05 16 38 H 0.19 1.66 8.06 -2.91 -0.02 1.64 16 39 H 0.17 2.61 7.26 -2.91 -0.02 2.59 16 Total: -1.00 -73.08 337.32 -0.76 -73.83 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.33 Total: 16.71 kcal Atomic # 6 Polarization: -28.39 SS G_CDS: 5.02 Total: -23.37 kcal Atomic # 7 Polarization: -123.40 SS G_CDS: -2.10 Total: -125.50 kcal Atomic # 8 Polarization: -86.64 SS G_CDS: -4.20 Total: -90.84 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.85 Total: 46.27 kcal Atomic # 16 Polarization: 104.55 SS G_CDS: -1.66 Total: 102.89 kcal Total: -73.08 -0.76 -73.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619752255.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.612 kcal (2) G-P(sol) polarization free energy of solvation -73.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds