Wall clock time and date at job start Tue Mar 31 2020 12:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47028 * 2 1 4 4 N 1.46497 * 109.47410 * 120.00258 * 2 1 3 5 5 S 1.65604 * 119.99842 * 265.00180 * 4 2 1 6 6 O 1.42103 * 106.40360 * 311.46040 * 5 4 2 7 7 O 1.42101 * 106.40002 * 178.53769 * 5 4 2 8 8 N 1.65603 * 107.21689 * 64.99780 * 5 4 2 9 9 C 1.46499 * 119.99954 * 269.99863 * 8 5 4 10 10 C 1.46506 * 120.00110 * 90.00259 * 8 5 4 11 11 H 1.08998 * 109.46566 * 359.97438 * 10 8 5 12 12 C 1.52997 * 109.47289 * 119.99604 * 10 8 5 13 13 C 1.50697 * 109.47015 * 240.00062 * 10 8 5 14 14 H 1.07998 * 120.00039 * 359.97438 * 13 10 8 15 15 C 1.37880 * 119.99815 * 179.97438 * 13 10 8 16 16 N 1.31508 * 119.99915 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99777 * 179.97438 * 15 13 10 18 18 H 1.48506 * 109.46954 * 59.99790 * 17 15 13 19 19 H 1.48496 * 109.46873 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47158 * 300.00368 * 17 15 13 21 21 C 1.50702 * 109.47087 * 240.00305 * 2 1 3 22 22 C 1.38423 * 122.53857 * 99.99895 * 21 2 1 23 23 C 1.33390 * 114.91766 * 179.97438 * 22 21 2 24 24 S 1.75882 * 109.59617 * 0.02562 * 23 22 21 25 25 C 1.33386 * 122.53794 * 279.70755 * 21 2 1 26 26 H 1.08999 * 109.47353 * 299.99470 * 1 2 3 27 27 H 1.08994 * 109.47377 * 59.99804 * 1 2 3 28 28 H 1.09004 * 109.46571 * 179.97438 * 1 2 3 29 29 H 0.96995 * 120.00278 * 84.99460 * 4 2 1 30 30 H 1.09000 * 109.46842 * 270.00029 * 9 8 5 31 31 H 1.08994 * 109.47173 * 30.00563 * 9 8 5 32 32 H 1.08998 * 109.46730 * 150.00596 * 9 8 5 33 33 H 1.09002 * 109.47153 * 179.97438 * 12 10 8 34 34 H 1.09001 * 109.46832 * 60.00146 * 12 10 8 35 35 H 1.09004 * 109.47261 * 300.00128 * 12 10 8 36 36 H 0.97001 * 119.99839 * 180.02562 * 16 15 13 37 37 H 1.07995 * 122.54046 * 359.95157 * 22 21 2 38 38 H 1.08003 * 125.20200 * 179.97438 * 23 22 21 39 39 H 1.07999 * 125.20349 * 0.02562 * 25 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 16 2.4122 0.1772 2.5505 6 8 3.2436 1.2444 2.1156 7 8 2.8125 -0.7698 3.5314 8 7 1.0168 0.8703 3.1115 9 6 0.6185 2.1992 2.6409 10 6 0.1807 0.1545 4.0784 11 1 0.6344 -0.8097 4.3074 12 6 0.0628 0.9807 5.3608 13 6 -1.1908 -0.0626 3.4928 14 1 -1.4171 0.2969 2.4999 15 6 -2.1566 -0.7204 4.2247 16 7 -1.8808 -1.1586 5.4335 17 14 -3.8569 -0.9889 3.4990 18 1 -3.7427 -1.7899 2.2537 19 1 -4.7039 -1.7156 4.4786 20 1 -4.4753 0.3248 3.1875 21 6 2.0323 -0.7104 -1.2305 22 6 2.4716 -0.0322 -2.3545 23 6 2.8838 -0.8114 -3.3556 24 16 2.7236 -2.5007 -2.8928 25 6 2.0927 -2.0400 -1.3169 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 2.1110 -1.6562 1.1948 30 1 1.0439 2.9593 3.2963 31 1 0.9837 2.3495 1.6251 32 1 -0.4686 2.2776 2.6515 33 1 -0.5597 0.4483 6.0800 34 1 -0.3912 1.9447 5.1314 35 1 1.0548 1.1377 5.7843 36 1 -2.5602 -1.6217 5.9483 37 1 2.4795 1.0459 -2.4164 38 1 3.2579 -0.4589 -4.3055 39 1 1.7971 -2.7285 -0.5391 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619752257.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:58 Heat of formation + Delta-G solvation = -42.062385 kcal Electronic energy + Delta-G solvation = -23677.822544 eV Core-core repulsion = 20260.183585 eV Total energy + Delta-G solvation = -3417.638960 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -38.88942 -36.66812 -36.20610 -35.24573 -34.93003 -32.61363 -29.83750 -29.15819 -28.81609 -25.51090 -25.24789 -24.70666 -21.84255 -20.79983 -19.12493 -18.82336 -17.85086 -17.00683 -16.68655 -16.42371 -16.03733 -15.25194 -14.63744 -14.21073 -13.92235 -13.50163 -13.32538 -13.29290 -12.84530 -12.75477 -12.63273 -12.39968 -11.99993 -11.85962 -11.77019 -11.54955 -11.39392 -11.28390 -11.27019 -11.20336 -10.96630 -10.88659 -10.63622 -10.44840 -10.21420 -10.05754 -9.38866 -9.20992 -8.87429 -8.49298 -8.45034 -7.96717 -6.10603 -4.19009 0.92927 1.25532 1.58156 1.89806 2.62412 3.23579 3.29978 3.30497 3.51592 4.16544 4.33632 4.70096 4.93307 5.00816 5.17821 5.20195 5.27107 5.43291 5.53862 5.58045 5.71062 5.88734 6.06600 6.13070 6.16948 6.30183 6.33409 6.48742 6.63734 6.66249 6.87382 6.87902 7.11475 7.23382 7.52205 7.62560 7.77972 8.04355 8.24708 8.83652 9.47167 10.94382 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.014608 B = 0.004933 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.239042 B = 5674.527377 C = 6748.160157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.213 3.787 3 H 0.094 0.906 4 N -1.122 6.122 5 S 2.782 3.218 6 O -0.998 6.998 7 O -0.981 6.981 8 N -0.989 5.989 9 C 0.104 3.896 10 C 0.269 3.731 11 H 0.058 0.942 12 C -0.145 4.145 13 C -0.525 4.525 14 H 0.066 0.934 15 C 0.065 3.935 16 N -0.886 5.886 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.099 4.099 22 C -0.123 4.123 23 C -0.214 4.214 24 S 0.086 5.914 25 C -0.199 4.199 26 H 0.087 0.913 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.411 0.589 30 H 0.043 0.957 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.032 0.968 35 H 0.011 0.989 36 H 0.264 0.736 37 H 0.143 0.857 38 H 0.163 0.837 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.607 1.359 -14.716 15.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.103 3.897 3 H 0.112 0.888 4 N -0.879 5.879 5 S 2.791 3.209 6 O -0.982 6.982 7 O -0.966 6.966 8 N -0.832 5.832 9 C -0.042 4.042 10 C 0.166 3.834 11 H 0.076 0.924 12 C -0.204 4.204 13 C -0.564 4.564 14 H 0.084 0.916 15 C -0.138 4.138 16 N -0.524 5.524 17 Si 0.722 3.278 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.113 4.113 22 C -0.154 4.154 23 C -0.350 4.350 24 S 0.349 5.651 25 C -0.335 4.335 26 H 0.106 0.894 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.244 0.756 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.051 0.949 35 H 0.031 0.969 36 H 0.074 0.926 37 H 0.161 0.839 38 H 0.181 0.819 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 6.705 0.157 -14.898 16.338 hybrid contribution -1.692 0.624 0.128 1.808 sum 5.013 0.781 -14.771 15.618 Atomic orbital electron populations 1.22469 0.93509 1.03795 1.03380 1.19306 0.94385 0.94958 0.81056 0.88770 1.56189 1.83758 1.19716 1.28285 1.01800 0.73596 0.73012 0.72475 1.93541 1.65761 1.56050 1.82829 1.93594 1.81821 1.63125 1.58014 1.57705 1.42957 1.26169 1.56353 1.21234 1.02429 0.83555 0.97023 1.18715 0.89496 0.90778 0.84398 0.92394 1.22053 0.98457 0.99639 1.00280 1.21367 0.95993 1.37306 1.01765 0.91631 1.24911 0.98640 0.95387 0.94823 1.69869 1.34368 1.38049 1.10148 0.86632 0.84011 0.78306 0.78832 1.20303 1.21339 1.20287 1.19088 1.02095 0.93172 0.96908 1.20084 1.01365 1.01387 0.92596 1.25547 1.09736 0.95716 1.03965 1.84220 1.63414 1.07446 1.09975 1.25408 1.08535 0.98856 1.00740 0.89404 0.92125 0.91690 0.75592 0.93825 0.93263 0.90092 0.88968 0.94882 0.96941 0.92620 0.83946 0.81910 0.81695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 9.50 37.16 0.35 -2.03 16 2 C 0.21 2.92 3.23 -69.08 -0.22 2.70 16 3 H 0.09 1.26 7.01 -51.93 -0.36 0.90 16 4 N -1.12 -17.53 5.49 -5.88 -0.03 -17.56 16 5 S 2.78 53.45 6.08 -107.50 -0.65 52.80 16 6 O -1.00 -20.16 16.55 -57.17 -0.95 -21.11 16 7 O -0.98 -22.20 16.70 -57.17 -0.95 -23.15 16 8 N -0.99 -19.54 2.79 -115.86 -0.32 -19.86 16 9 C 0.10 1.75 8.14 59.85 0.49 2.24 16 10 C 0.27 6.32 2.62 -69.08 -0.18 6.13 16 11 H 0.06 1.53 6.91 -51.93 -0.36 1.17 16 12 C -0.14 -3.37 8.97 37.16 0.33 -3.03 16 13 C -0.52 -12.74 7.99 -34.44 -0.28 -13.01 16 14 H 0.07 1.51 5.58 -52.49 -0.29 1.21 16 15 C 0.07 1.66 5.30 -17.82 -0.09 1.56 16 16 N -0.89 -23.81 11.32 55.43 0.63 -23.18 16 17 Si 0.89 19.85 29.54 -169.99 -5.02 14.83 16 18 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 19 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 21 C -0.10 -1.23 4.86 -106.25 -0.52 -1.75 16 22 C -0.12 -1.35 9.95 -41.21 -0.41 -1.76 16 23 C -0.21 -2.09 11.23 29.04 0.33 -1.77 16 24 S 0.09 0.87 23.34 -107.50 -2.51 -1.63 16 25 C -0.20 -2.36 10.30 29.04 0.30 -2.06 16 26 H 0.09 1.36 4.85 -51.93 -0.25 1.11 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.41 5.85 7.43 -34.47 -0.26 5.59 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.70 7.35 -51.93 -0.38 0.32 16 32 H 0.08 1.37 7.02 -51.93 -0.36 1.00 16 33 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 34 H 0.03 0.71 7.67 -51.93 -0.40 0.32 16 35 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 37 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.16 1.17 8.06 -52.48 -0.42 0.75 16 39 H 0.17 1.81 7.25 -52.49 -0.38 1.42 16 LS Contribution 339.36 15.07 5.11 5.11 Total: -1.00 -30.24 339.36 -9.64 -39.87 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -5.04 Total: 6.66 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: 0.10 Total: -12.77 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: 0.27 Total: -60.60 kcal Atomic # 8 Polarization: -42.36 SS G_CDS: -1.90 Total: -44.26 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Atomic # 16 Polarization: 54.33 SS G_CDS: -3.16 Total: 51.17 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.24 -9.64 -39.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619752257.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.192 kcal (2) G-P(sol) polarization free energy of solvation -30.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds