Wall clock time and date at job start Tue Mar 31 2020 12:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47028 * 2 1 4 4 N 1.46497 * 109.47410 * 120.00258 * 2 1 3 5 5 S 1.65604 * 119.99842 * 265.00180 * 4 2 1 6 6 O 1.42103 * 106.40360 * 311.46040 * 5 4 2 7 7 O 1.42101 * 106.40002 * 178.53769 * 5 4 2 8 8 N 1.65603 * 107.21689 * 64.99780 * 5 4 2 9 9 C 1.46499 * 119.99954 * 269.99863 * 8 5 4 10 10 C 1.46506 * 120.00110 * 90.00259 * 8 5 4 11 11 H 1.08998 * 109.46566 * 359.97438 * 10 8 5 12 12 C 1.52997 * 109.47289 * 119.99604 * 10 8 5 13 13 C 1.50697 * 109.47015 * 240.00062 * 10 8 5 14 14 H 1.07998 * 120.00039 * 359.97438 * 13 10 8 15 15 C 1.37880 * 119.99815 * 179.97438 * 13 10 8 16 16 N 1.31508 * 119.99915 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99777 * 179.97438 * 15 13 10 18 18 H 1.48506 * 109.46954 * 59.99790 * 17 15 13 19 19 H 1.48496 * 109.46873 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47158 * 300.00368 * 17 15 13 21 21 C 1.50702 * 109.47087 * 240.00305 * 2 1 3 22 22 C 1.38423 * 122.53857 * 99.99895 * 21 2 1 23 23 C 1.33390 * 114.91766 * 179.97438 * 22 21 2 24 24 S 1.75882 * 109.59617 * 0.02562 * 23 22 21 25 25 C 1.33386 * 122.53794 * 279.70755 * 21 2 1 26 26 H 1.08999 * 109.47353 * 299.99470 * 1 2 3 27 27 H 1.08994 * 109.47377 * 59.99804 * 1 2 3 28 28 H 1.09004 * 109.46571 * 179.97438 * 1 2 3 29 29 H 0.96995 * 120.00278 * 84.99460 * 4 2 1 30 30 H 1.09000 * 109.46842 * 270.00029 * 9 8 5 31 31 H 1.08994 * 109.47173 * 30.00563 * 9 8 5 32 32 H 1.08998 * 109.46730 * 150.00596 * 9 8 5 33 33 H 1.09002 * 109.47153 * 179.97438 * 12 10 8 34 34 H 1.09001 * 109.46832 * 60.00146 * 12 10 8 35 35 H 1.09004 * 109.47261 * 300.00128 * 12 10 8 36 36 H 0.97001 * 119.99839 * 180.02562 * 16 15 13 37 37 H 1.07995 * 122.54046 * 359.95157 * 22 21 2 38 38 H 1.08003 * 125.20200 * 179.97438 * 23 22 21 39 39 H 1.07999 * 125.20349 * 0.02562 * 25 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 16 2.4122 0.1772 2.5505 6 8 3.2436 1.2444 2.1156 7 8 2.8125 -0.7698 3.5314 8 7 1.0168 0.8703 3.1115 9 6 0.6185 2.1992 2.6409 10 6 0.1807 0.1545 4.0784 11 1 0.6344 -0.8097 4.3074 12 6 0.0628 0.9807 5.3608 13 6 -1.1908 -0.0626 3.4928 14 1 -1.4171 0.2969 2.4999 15 6 -2.1566 -0.7204 4.2247 16 7 -1.8808 -1.1586 5.4335 17 14 -3.8569 -0.9889 3.4990 18 1 -3.7427 -1.7899 2.2537 19 1 -4.7039 -1.7156 4.4786 20 1 -4.4753 0.3248 3.1875 21 6 2.0323 -0.7104 -1.2305 22 6 2.4716 -0.0322 -2.3545 23 6 2.8838 -0.8114 -3.3556 24 16 2.7236 -2.5007 -2.8928 25 6 2.0927 -2.0400 -1.3169 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 2.1110 -1.6562 1.1948 30 1 1.0439 2.9593 3.2963 31 1 0.9837 2.3495 1.6251 32 1 -0.4686 2.2776 2.6515 33 1 -0.5597 0.4483 6.0800 34 1 -0.3912 1.9447 5.1314 35 1 1.0548 1.1377 5.7843 36 1 -2.5602 -1.6217 5.9483 37 1 2.4795 1.0459 -2.4164 38 1 3.2579 -0.4589 -4.3055 39 1 1.7971 -2.7285 -0.5391 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619752257.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:56 Heat of formation + Delta-G solvation = -62.376953 kcal Electronic energy + Delta-G solvation = -23678.703450 eV Core-core repulsion = 20260.183585 eV Total energy + Delta-G solvation = -3418.519865 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 3.80 seconds Orbital eigenvalues (eV) -39.83192 -38.30301 -37.88152 -36.89198 -36.02909 -34.45504 -30.99726 -30.84503 -29.79747 -27.21924 -26.94758 -25.67582 -22.83036 -22.58266 -20.48928 -19.78654 -19.06833 -18.52657 -18.25943 -17.86111 -17.31147 -16.91872 -16.19839 -15.35904 -15.11745 -14.98384 -14.82913 -14.48951 -14.24770 -13.77259 -13.72749 -13.63603 -13.41547 -13.25222 -13.20340 -13.15329 -13.04644 -12.94522 -12.67555 -12.66008 -12.48224 -12.31091 -12.17489 -12.03733 -11.83250 -11.52414 -11.11055 -10.57112 -10.43813 -9.70678 -9.60765 -9.27747 -8.03776 -6.17192 -0.28666 0.11525 0.77685 1.09206 1.49128 1.49933 1.56302 1.73436 2.07253 2.49275 2.65811 3.25465 3.45493 3.77628 4.05761 4.11394 4.21615 4.38749 4.42152 4.60452 4.72398 4.76137 4.83358 4.96775 4.99397 5.02064 5.07755 5.19185 5.22424 5.31357 5.43202 5.49248 5.60811 5.67109 5.75408 5.90110 6.07290 6.19345 6.34672 6.92885 7.52054 9.00789 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.014608 B = 0.004933 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.239042 B = 5674.527377 C = 6748.160157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.211 3.789 3 H 0.101 0.899 4 N -1.114 6.114 5 S 2.798 3.202 6 O -1.006 7.006 7 O -1.020 7.020 8 N -0.992 5.992 9 C 0.097 3.903 10 C 0.275 3.725 11 H 0.023 0.977 12 C -0.139 4.139 13 C -0.521 4.521 14 H 0.080 0.920 15 C 0.016 3.984 16 N -0.920 5.920 17 Si 0.953 3.047 18 H -0.272 1.272 19 H -0.295 1.295 20 H -0.268 1.268 21 C -0.109 4.109 22 C -0.140 4.140 23 C -0.207 4.207 24 S 0.103 5.897 25 C -0.219 4.219 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.054 0.946 29 H 0.417 0.583 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.045 0.955 35 H 0.016 0.984 36 H 0.261 0.739 37 H 0.159 0.841 38 H 0.191 0.809 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.380 2.226 -17.374 18.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.102 3.898 3 H 0.118 0.882 4 N -0.875 5.875 5 S 2.807 3.193 6 O -0.990 6.990 7 O -1.005 7.005 8 N -0.834 5.834 9 C -0.049 4.049 10 C 0.170 3.830 11 H 0.041 0.959 12 C -0.199 4.199 13 C -0.560 4.560 14 H 0.098 0.902 15 C -0.183 4.183 16 N -0.560 5.560 17 Si 0.780 3.220 18 H -0.197 1.197 19 H -0.221 1.221 20 H -0.193 1.193 21 C -0.123 4.123 22 C -0.170 4.170 23 C -0.342 4.342 24 S 0.367 5.633 25 C -0.356 4.356 26 H 0.089 0.911 27 H 0.102 0.898 28 H 0.074 0.926 29 H 0.252 0.748 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.035 0.965 36 H 0.070 0.930 37 H 0.177 0.823 38 H 0.208 0.792 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 6.485 1.046 -17.578 18.765 hybrid contribution -1.547 0.346 0.862 1.805 sum 4.938 1.392 -16.716 17.485 Atomic orbital electron populations 1.22414 0.93490 1.03237 1.03612 1.19452 0.94405 0.95257 0.80731 0.88158 1.55916 1.83622 1.19992 1.27956 1.01150 0.73279 0.72464 0.72407 1.93524 1.66008 1.56491 1.82943 1.93538 1.82619 1.64228 1.60083 1.57548 1.42376 1.27259 1.56246 1.21455 1.02670 0.82072 0.98669 1.18376 0.89525 0.89741 0.85311 0.95933 1.21946 0.98290 0.99815 0.99820 1.21664 0.96025 1.36238 1.02094 0.90248 1.25646 1.01998 0.95539 0.95121 1.70019 1.35244 1.39234 1.11476 0.85687 0.80029 0.78375 0.77936 1.19719 1.22101 1.19350 1.19072 1.02998 0.93400 0.96828 1.20258 1.01974 1.02433 0.92347 1.25924 1.08382 0.95167 1.04700 1.84184 1.62634 1.07898 1.08574 1.25578 1.09041 0.99016 1.01921 0.91108 0.89811 0.92637 0.74842 0.93134 0.90559 0.90073 0.91329 0.93628 0.96520 0.93011 0.82327 0.79188 0.81729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.34 9.50 71.98 0.68 -3.65 16 2 C 0.21 5.42 3.23 44.25 0.14 5.56 16 3 H 0.10 2.45 7.01 -2.39 -0.02 2.44 16 4 N -1.11 -34.10 5.49 -172.52 -0.95 -35.05 16 5 S 2.80 106.76 6.08 -56.49 -0.34 106.42 16 6 O -1.01 -39.49 16.55 -128.00 -2.12 -41.61 16 7 O -1.02 -47.14 16.70 -128.00 -2.14 -49.27 16 8 N -0.99 -38.68 2.79 -520.46 -1.45 -40.13 16 9 C 0.10 3.08 8.14 127.77 1.04 4.12 16 10 C 0.27 13.03 2.62 44.24 0.12 13.14 16 11 H 0.02 1.24 6.91 -2.39 -0.02 1.23 16 12 C -0.14 -6.54 8.97 71.98 0.65 -5.90 16 13 C -0.52 -25.09 7.99 25.60 0.20 -24.88 16 14 H 0.08 3.54 5.58 -2.91 -0.02 3.52 16 15 C 0.02 0.83 5.30 84.66 0.45 1.28 16 16 N -0.92 -50.39 11.32 21.45 0.24 -50.14 16 17 Si 0.95 40.38 29.54 68.60 2.03 42.41 16 18 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 19 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 20 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 21 C -0.11 -2.49 4.86 -20.92 -0.10 -2.60 16 22 C -0.14 -2.67 9.95 21.22 0.21 -2.46 16 23 C -0.21 -3.39 11.23 66.72 0.75 -2.64 16 24 S 0.10 1.88 23.34 -56.49 -1.32 0.56 16 25 C -0.22 -4.88 10.30 66.72 0.69 -4.19 16 26 H 0.07 2.07 4.85 -2.39 -0.01 2.06 16 27 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 29 H 0.42 11.83 7.43 -96.75 -0.72 11.11 16 30 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.08 2.00 7.35 -2.39 -0.02 1.98 16 32 H 0.08 2.59 7.02 -2.39 -0.02 2.57 16 33 H 0.07 3.57 6.07 -2.39 -0.01 3.56 16 34 H 0.04 1.97 7.67 -2.39 -0.02 1.95 16 35 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 36 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 37 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 38 H 0.19 1.98 8.06 -2.91 -0.02 1.96 16 39 H 0.17 3.52 7.25 -2.91 -0.02 3.50 16 Total: -1.00 -64.20 339.36 -0.86 -65.06 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 0.36 Total: 23.97 kcal Atomic # 6 Polarization: -27.05 SS G_CDS: 4.83 Total: -22.22 kcal Atomic # 7 Polarization: -123.16 SS G_CDS: -2.16 Total: -125.32 kcal Atomic # 8 Polarization: -86.62 SS G_CDS: -4.26 Total: -90.88 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.41 kcal Atomic # 16 Polarization: 108.64 SS G_CDS: -1.66 Total: 106.98 kcal Total: -64.20 -0.86 -65.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619752257.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.683 kcal (2) G-P(sol) polarization free energy of solvation -64.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.80 seconds