Wall clock time and date at job start Tue Mar 31 2020 12:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08992 * 109.47331 * 2 1 4 4 C 1.50704 * 109.47181 * 239.99525 * 2 1 3 5 5 H 1.07999 * 120.00082 * 239.99598 * 4 2 1 6 6 C 1.37877 * 119.99642 * 60.00583 * 4 2 1 7 7 N 1.31516 * 120.00270 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99903 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47230 * 89.99606 * 8 6 4 10 10 H 1.48503 * 109.46772 * 209.99620 * 8 6 4 11 11 H 1.48498 * 109.47045 * 329.99543 * 8 6 4 12 12 N 1.46504 * 109.46967 * 120.00132 * 2 1 3 13 13 C 1.46499 * 120.00351 * 60.00056 * 12 2 1 14 14 S 1.65598 * 119.99716 * 239.99944 * 12 2 1 15 15 O 1.42101 * 106.40624 * 336.45985 * 14 12 2 16 16 O 1.42105 * 106.40424 * 203.54024 * 14 12 2 17 17 N 1.65595 * 107.22008 * 89.99816 * 14 12 2 18 18 C 1.46505 * 119.99846 * 65.00020 * 17 14 12 19 19 H 1.09002 * 109.47068 * 335.00142 * 18 17 14 20 20 C 1.53002 * 109.47411 * 95.00222 * 18 17 14 21 21 C 1.50703 * 109.47064 * 215.00173 * 18 17 14 22 22 C 1.38423 * 122.54078 * 139.73947 * 21 18 17 23 23 C 1.33389 * 114.92333 * 179.76089 * 22 21 18 24 24 S 1.75883 * 109.59112 * 0.47544 * 23 22 21 25 25 C 1.33388 * 122.53947 * 320.02061 * 21 18 17 26 26 H 1.09005 * 109.47491 * 300.00239 * 1 2 3 27 27 H 1.09006 * 109.47344 * 60.00007 * 1 2 3 28 28 H 1.09005 * 109.47680 * 180.02562 * 1 2 3 29 29 H 0.96997 * 120.00314 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.46647 * 269.99841 * 13 12 2 31 31 H 1.09004 * 109.46740 * 29.99742 * 13 12 2 32 32 H 1.08998 * 109.47485 * 150.00075 * 13 12 2 33 33 H 0.96998 * 120.00287 * 244.99690 * 17 14 12 34 34 H 1.09002 * 109.47075 * 59.99363 * 20 18 17 35 35 H 1.08996 * 109.47407 * 180.02562 * 20 18 17 36 36 H 1.09000 * 109.46986 * 300.00092 * 20 18 17 37 37 H 1.08001 * 122.53878 * 359.97438 * 22 21 18 38 38 H 1.07996 * 125.20758 * 180.20309 * 23 22 21 39 39 H 1.08007 * 125.20411 * 359.97438 * 25 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3448 -2.1617 -4.4123 10 1 2.4873 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7119 12 7 2.0182 -0.6907 1.1962 13 6 1.6643 -2.0932 1.4281 14 16 2.9703 0.1141 2.2862 15 8 3.5793 1.1829 1.5749 16 8 3.7117 -0.8789 2.9815 17 7 1.9606 0.8091 3.3997 18 6 1.1508 -0.0352 4.2817 19 1 0.9875 -1.0034 3.8084 20 6 1.8826 -0.2340 5.6106 21 6 -0.1772 0.6308 4.5343 22 6 -1.3681 -0.0737 4.5734 23 6 -2.4515 0.6665 4.8130 24 16 -1.9857 2.3530 4.9922 25 6 -0.2948 1.9448 4.7319 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 0.7082 1.1608 -3.4844 30 1 0.7375 -2.1443 1.9994 31 1 1.5294 -2.5969 0.4708 32 1 2.4627 -2.5819 1.9864 33 1 1.9054 1.7750 3.4681 34 1 2.0460 0.7342 6.0838 35 1 1.2804 -0.8625 6.2666 36 1 2.8432 -0.7158 5.4278 37 1 -1.4159 -1.1424 4.4247 38 1 -3.4609 0.2888 4.8817 39 1 0.5232 2.6500 4.7323 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619752258.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:02 Heat of formation + Delta-G solvation = -41.330618 kcal Electronic energy + Delta-G solvation = -23640.487082 eV Core-core repulsion = 20222.879854 eV Total energy + Delta-G solvation = -3417.607228 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.92457 -36.65902 -36.14278 -35.22047 -35.00094 -32.56981 -29.93794 -29.10550 -28.94505 -25.49946 -25.15529 -24.84650 -21.91343 -20.81534 -19.09550 -18.81121 -17.87557 -16.97208 -16.79825 -16.49825 -16.04153 -15.15450 -14.57877 -14.24952 -13.99626 -13.46556 -13.40899 -13.21358 -12.97261 -12.82606 -12.59921 -12.44703 -12.05578 -11.96970 -11.83195 -11.53736 -11.44406 -11.31402 -11.26308 -11.20603 -10.90754 -10.81585 -10.67272 -10.44296 -10.21106 -10.05932 -9.43765 -9.24296 -8.86632 -8.45375 -8.44303 -7.96064 -6.06263 -4.12901 0.94284 1.22800 1.59734 1.91374 2.62092 3.28699 3.35852 3.39805 3.52730 4.12875 4.40880 4.64902 4.88158 5.01586 5.07320 5.24080 5.25387 5.29768 5.47390 5.52054 5.72109 5.79135 5.85903 6.07025 6.08010 6.20004 6.31904 6.35308 6.47643 6.67878 6.82833 6.85853 7.06167 7.15061 7.50425 7.64621 7.80774 8.06679 8.28969 8.89059 9.52685 10.99386 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.015952 B = 0.004710 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.873473 B = 5943.025892 C = 6896.448061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.269 3.731 3 H 0.058 0.942 4 C -0.520 4.520 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.988 5.988 13 C 0.094 3.906 14 S 2.778 3.222 15 O -0.975 6.975 16 O -0.995 6.995 17 N -1.127 6.127 18 C 0.216 3.784 19 H 0.092 0.908 20 C -0.164 4.164 21 C -0.100 4.100 22 C -0.123 4.123 23 C -0.211 4.211 24 S 0.091 5.909 25 C -0.201 4.201 26 H 0.010 0.990 27 H 0.091 0.909 28 H 0.031 0.969 29 H 0.263 0.737 30 H 0.036 0.964 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.410 0.590 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.142 0.858 38 H 0.164 0.836 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.394 -0.502 16.574 17.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.167 3.833 3 H 0.075 0.925 4 C -0.560 4.560 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.830 5.830 13 C -0.052 4.052 14 S 2.787 3.213 15 O -0.959 6.959 16 O -0.978 6.978 17 N -0.884 5.884 18 C 0.106 3.894 19 H 0.110 0.890 20 C -0.224 4.224 21 C -0.114 4.114 22 C -0.154 4.154 23 C -0.346 4.346 24 S 0.355 5.645 25 C -0.337 4.337 26 H 0.030 0.970 27 H 0.109 0.891 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.102 0.898 32 H 0.082 0.918 33 H 0.243 0.757 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.160 0.840 38 H 0.181 0.819 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -6.297 0.828 16.699 17.866 hybrid contribution 0.406 -1.274 -1.222 1.811 sum -5.892 -0.446 15.477 16.567 Atomic orbital electron populations 1.22082 0.98163 0.99622 1.00533 1.18710 0.91311 0.92948 0.80380 0.92469 1.21337 1.31577 1.13002 0.90078 0.91918 1.24907 0.94978 0.94994 0.98992 1.69864 1.36541 1.22690 1.23749 0.86502 0.79284 0.79282 0.82372 1.20675 1.21140 1.19822 1.57639 1.69855 1.19763 1.35773 1.21348 0.98574 0.82539 1.02769 1.01987 0.73666 0.73232 0.72415 1.93615 1.74416 1.56020 1.71818 1.93528 1.69179 1.60695 1.74423 1.56415 1.61941 1.17215 1.52866 1.19232 0.86143 0.92731 0.91321 0.89025 1.22309 1.01456 1.02452 0.96139 1.19040 0.95840 0.93338 1.03183 1.20049 0.90964 1.01486 1.02907 1.25550 1.02911 0.96024 1.10125 1.84232 1.01072 1.08384 1.70831 1.25334 0.99490 0.99140 1.09717 0.97048 0.89074 0.94968 0.92722 0.94593 0.89760 0.91827 0.75715 0.92165 0.91599 0.90640 0.84003 0.81877 0.81975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.97 37.15 0.33 -2.96 16 2 C 0.27 6.57 2.62 -69.08 -0.18 6.39 16 3 H 0.06 1.56 6.91 -51.93 -0.36 1.20 16 4 C -0.52 -13.95 7.99 -34.44 -0.28 -14.23 16 5 H 0.06 1.67 7.33 -52.49 -0.38 1.28 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.83 11.32 55.43 0.63 -24.21 16 8 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 N -0.99 -20.17 3.12 -115.85 -0.36 -20.53 16 13 C 0.09 1.63 9.07 59.85 0.54 2.17 16 14 S 2.78 53.59 6.05 -107.50 -0.65 52.94 16 15 O -0.97 -22.67 16.70 -57.17 -0.95 -23.63 16 16 O -0.99 -19.88 16.00 -57.17 -0.91 -20.80 16 17 N -1.13 -16.56 5.49 -5.88 -0.03 -16.59 16 18 C 0.22 2.72 3.09 -69.08 -0.21 2.51 16 19 H 0.09 1.15 6.55 -51.93 -0.34 0.81 16 20 C -0.16 -1.82 9.50 37.16 0.35 -1.46 16 21 C -0.10 -1.19 4.86 -106.25 -0.52 -1.70 16 22 C -0.12 -1.34 9.95 -41.21 -0.41 -1.75 16 23 C -0.21 -2.12 11.23 29.04 0.33 -1.79 16 24 S 0.09 0.93 23.34 -107.50 -2.51 -1.58 16 25 C -0.20 -2.26 10.30 29.04 0.30 -1.96 16 26 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.09 2.31 6.07 -51.93 -0.32 2.00 16 28 H 0.03 0.69 7.67 -51.93 -0.40 0.29 16 29 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 30 H 0.04 0.52 7.41 -51.93 -0.38 0.13 16 31 H 0.08 1.54 7.02 -51.93 -0.36 1.17 16 32 H 0.06 1.02 7.02 -51.93 -0.36 0.66 16 33 H 0.41 5.37 7.44 -34.47 -0.26 5.11 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.94 7.64 -51.93 -0.40 0.54 16 37 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 39 H 0.16 1.59 7.26 -52.48 -0.38 1.21 16 LS Contribution 342.94 15.07 5.17 5.17 Total: -1.00 -32.02 342.94 -9.68 -41.69 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -5.19 Total: 4.59 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: 0.16 Total: -13.15 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: 0.23 Total: -61.32 kcal Atomic # 8 Polarization: -42.56 SS G_CDS: -1.87 Total: -44.43 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 54.53 SS G_CDS: -3.16 Total: 51.37 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.02 -9.68 -41.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619752258.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.364 kcal (2) G-P(sol) polarization free energy of solvation -32.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds