Wall clock time and date at job start Tue Mar 31 2020 12:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08992 * 109.47331 * 2 1 4 4 C 1.50704 * 109.47181 * 239.99525 * 2 1 3 5 5 H 1.07999 * 120.00082 * 239.99598 * 4 2 1 6 6 C 1.37877 * 119.99642 * 60.00583 * 4 2 1 7 7 N 1.31516 * 120.00270 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99903 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47230 * 89.99606 * 8 6 4 10 10 H 1.48503 * 109.46772 * 209.99620 * 8 6 4 11 11 H 1.48498 * 109.47045 * 329.99543 * 8 6 4 12 12 N 1.46504 * 109.46967 * 120.00132 * 2 1 3 13 13 C 1.46499 * 120.00351 * 60.00056 * 12 2 1 14 14 S 1.65598 * 119.99716 * 239.99944 * 12 2 1 15 15 O 1.42101 * 106.40624 * 336.45985 * 14 12 2 16 16 O 1.42105 * 106.40424 * 203.54024 * 14 12 2 17 17 N 1.65595 * 107.22008 * 89.99816 * 14 12 2 18 18 C 1.46505 * 119.99846 * 65.00020 * 17 14 12 19 19 H 1.09002 * 109.47068 * 335.00142 * 18 17 14 20 20 C 1.53002 * 109.47411 * 95.00222 * 18 17 14 21 21 C 1.50703 * 109.47064 * 215.00173 * 18 17 14 22 22 C 1.38423 * 122.54078 * 139.73947 * 21 18 17 23 23 C 1.33389 * 114.92333 * 179.76089 * 22 21 18 24 24 S 1.75883 * 109.59112 * 0.47544 * 23 22 21 25 25 C 1.33388 * 122.53947 * 320.02061 * 21 18 17 26 26 H 1.09005 * 109.47491 * 300.00239 * 1 2 3 27 27 H 1.09006 * 109.47344 * 60.00007 * 1 2 3 28 28 H 1.09005 * 109.47680 * 180.02562 * 1 2 3 29 29 H 0.96997 * 120.00314 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.46647 * 269.99841 * 13 12 2 31 31 H 1.09004 * 109.46740 * 29.99742 * 13 12 2 32 32 H 1.08998 * 109.47485 * 150.00075 * 13 12 2 33 33 H 0.96998 * 120.00287 * 244.99690 * 17 14 12 34 34 H 1.09002 * 109.47075 * 59.99363 * 20 18 17 35 35 H 1.08996 * 109.47407 * 180.02562 * 20 18 17 36 36 H 1.09000 * 109.46986 * 300.00092 * 20 18 17 37 37 H 1.08001 * 122.53878 * 359.97438 * 22 21 18 38 38 H 1.07996 * 125.20758 * 180.20309 * 23 22 21 39 39 H 1.08007 * 125.20411 * 359.97438 * 25 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3448 -2.1617 -4.4123 10 1 2.4873 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7119 12 7 2.0182 -0.6907 1.1962 13 6 1.6643 -2.0932 1.4281 14 16 2.9703 0.1141 2.2862 15 8 3.5793 1.1829 1.5749 16 8 3.7117 -0.8789 2.9815 17 7 1.9606 0.8091 3.3997 18 6 1.1508 -0.0352 4.2817 19 1 0.9875 -1.0034 3.8084 20 6 1.8826 -0.2340 5.6106 21 6 -0.1772 0.6308 4.5343 22 6 -1.3681 -0.0737 4.5734 23 6 -2.4515 0.6665 4.8130 24 16 -1.9857 2.3530 4.9922 25 6 -0.2948 1.9448 4.7319 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 0.7082 1.1608 -3.4844 30 1 0.7375 -2.1443 1.9994 31 1 1.5294 -2.5969 0.4708 32 1 2.4627 -2.5819 1.9864 33 1 1.9054 1.7750 3.4681 34 1 2.0460 0.7342 6.0838 35 1 1.2804 -0.8625 6.2666 36 1 2.8432 -0.7158 5.4278 37 1 -1.4159 -1.1424 4.4247 38 1 -3.4609 0.2888 4.8817 39 1 0.5232 2.6500 4.7323 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619752258.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:01 Heat of formation + Delta-G solvation = -63.439018 kcal Electronic energy + Delta-G solvation = -23641.445774 eV Core-core repulsion = 20222.879854 eV Total energy + Delta-G solvation = -3418.565920 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.82275 -38.29762 -37.86792 -36.87080 -36.03717 -34.51181 -31.00111 -30.88818 -29.79769 -27.22901 -26.97335 -25.70696 -22.84019 -22.61511 -20.42322 -19.76008 -19.12666 -18.57673 -18.35021 -17.81233 -17.45190 -16.87495 -16.14622 -15.36935 -15.10884 -14.97655 -14.87883 -14.44132 -14.18205 -13.92490 -13.72234 -13.70167 -13.45279 -13.25976 -13.15193 -13.11157 -13.04399 -12.99300 -12.69581 -12.61095 -12.52545 -12.30263 -12.17302 -12.11662 -11.91207 -11.52096 -11.16004 -10.62304 -10.48881 -9.69955 -9.61890 -9.25617 -8.10810 -6.24345 -0.30935 0.14343 0.80531 1.11923 1.42697 1.44953 1.54317 1.74291 2.11421 2.44138 2.65110 3.17638 3.46550 3.75005 4.08354 4.12443 4.17404 4.35568 4.40345 4.58636 4.73914 4.76708 4.78661 4.93694 4.98161 5.02816 5.05865 5.17214 5.24489 5.28807 5.33691 5.51217 5.58903 5.62306 5.69878 5.88495 6.04532 6.19905 6.31153 6.83570 7.44537 8.93412 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.015952 B = 0.004710 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.873473 B = 5943.025892 C = 6896.448061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.276 3.724 3 H 0.021 0.979 4 C -0.538 4.538 5 H 0.058 0.942 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.956 3.044 9 H -0.269 1.269 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.995 5.995 13 C 0.089 3.911 14 S 2.795 3.205 15 O -1.020 7.020 16 O -1.002 7.002 17 N -1.114 6.114 18 C 0.210 3.790 19 H 0.095 0.905 20 C -0.161 4.161 21 C -0.109 4.109 22 C -0.138 4.138 23 C -0.209 4.209 24 S 0.099 5.901 25 C -0.216 4.216 26 H 0.030 0.970 27 H 0.063 0.937 28 H 0.041 0.959 29 H 0.264 0.736 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.418 0.582 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.060 0.940 37 H 0.158 0.842 38 H 0.186 0.814 39 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.511 -1.529 17.656 19.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.171 3.829 3 H 0.039 0.961 4 C -0.577 4.577 5 H 0.077 0.923 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.781 3.219 9 H -0.194 1.194 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.837 5.837 13 C -0.057 4.057 14 S 2.804 3.196 15 O -1.004 7.004 16 O -0.986 6.986 17 N -0.875 5.875 18 C 0.101 3.899 19 H 0.113 0.887 20 C -0.220 4.220 21 C -0.123 4.123 22 C -0.168 4.168 23 C -0.345 4.345 24 S 0.362 5.638 25 C -0.352 4.352 26 H 0.049 0.951 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.253 0.747 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.175 0.825 38 H 0.203 0.797 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -7.417 -0.219 17.795 19.280 hybrid contribution 0.722 -0.932 -1.447 1.866 sum -6.695 -1.150 16.348 17.703 Atomic orbital electron populations 1.21846 0.96840 1.00047 1.00068 1.18348 0.92140 0.91208 0.81181 0.96071 1.21665 1.31569 1.13045 0.91430 0.92331 1.25642 0.95234 0.95690 1.01687 1.69985 1.37374 1.23735 1.24301 0.85597 0.78819 0.78408 0.79046 1.19428 1.21078 1.19885 1.57510 1.69901 1.21098 1.35197 1.21548 1.00610 0.80705 1.02824 1.01263 0.73615 0.72408 0.72298 1.93550 1.75984 1.57560 1.73327 1.93513 1.69714 1.61003 1.74333 1.56016 1.61723 1.17886 1.51916 1.19468 0.86547 0.92456 0.91463 0.88735 1.22282 1.00837 1.03230 0.95674 1.19039 0.95659 0.93610 1.03982 1.20249 0.90716 1.02442 1.03440 1.25887 1.03882 0.95653 1.09034 1.84233 1.00294 1.08820 1.70404 1.25564 1.00494 0.99375 1.09761 0.95143 0.91786 0.93944 0.92693 0.91318 0.90948 0.90689 0.74695 0.91392 0.89470 0.92103 0.82498 0.79653 0.81237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.78 8.97 71.98 0.65 -5.14 16 2 C 0.28 13.55 2.62 44.24 0.12 13.66 16 3 H 0.02 1.20 6.91 -2.39 -0.02 1.19 16 4 C -0.54 -29.03 7.99 25.60 0.20 -28.83 16 5 H 0.06 3.13 7.33 -2.91 -0.02 3.11 16 6 C 0.02 0.94 5.30 84.65 0.45 1.39 16 7 N -0.91 -51.64 11.32 21.45 0.24 -51.40 16 8 Si 0.96 43.27 29.54 68.60 2.03 45.29 16 9 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 10 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 12 N -1.00 -40.14 3.12 -520.45 -1.62 -41.77 16 13 C 0.09 2.92 9.07 127.77 1.16 4.08 16 14 S 2.79 107.27 6.05 -56.49 -0.34 106.93 16 15 O -1.02 -48.54 16.70 -128.00 -2.14 -50.68 16 16 O -1.00 -39.30 16.00 -128.00 -2.05 -41.35 16 17 N -1.11 -31.65 5.49 -172.50 -0.95 -32.59 16 18 C 0.21 4.87 3.09 44.25 0.14 5.01 16 19 H 0.09 2.14 6.55 -2.39 -0.02 2.12 16 20 C -0.16 -3.23 9.50 71.98 0.68 -2.54 16 21 C -0.11 -2.34 4.86 -20.92 -0.10 -2.44 16 22 C -0.14 -2.64 9.95 21.22 0.21 -2.43 16 23 C -0.21 -3.64 11.23 66.72 0.75 -2.89 16 24 S 0.10 1.83 23.34 -56.49 -1.32 0.51 16 25 C -0.22 -4.48 10.30 66.72 0.69 -3.79 16 26 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 27 H 0.06 3.26 6.07 -2.38 -0.01 3.24 16 28 H 0.04 1.77 7.67 -2.38 -0.02 1.75 16 29 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 30 H 0.07 1.80 7.41 -2.39 -0.02 1.78 16 31 H 0.07 2.56 7.02 -2.39 -0.02 2.54 16 32 H 0.07 2.29 7.02 -2.39 -0.02 2.27 16 33 H 0.42 10.66 7.44 -96.75 -0.72 9.94 16 34 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.06 1.41 7.64 -2.39 -0.02 1.39 16 37 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 38 H 0.19 2.27 8.06 -2.91 -0.02 2.25 16 39 H 0.17 3.10 7.26 -2.91 -0.02 3.07 16 Total: -1.00 -68.47 342.94 -0.86 -69.33 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.35 Total: 19.64 kcal Atomic # 6 Polarization: -28.86 SS G_CDS: 4.94 Total: -23.92 kcal Atomic # 7 Polarization: -123.43 SS G_CDS: -2.33 Total: -125.75 kcal Atomic # 8 Polarization: -87.85 SS G_CDS: -4.19 Total: -92.03 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: 109.10 SS G_CDS: -1.66 Total: 107.44 kcal Total: -68.47 -0.86 -69.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619752258.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.894 kcal (2) G-P(sol) polarization free energy of solvation -68.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds