Wall clock time and date at job start Tue Mar 31 2020 11:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47174 * 2 1 4 4 N 1.46505 * 109.46960 * 240.00466 * 2 1 3 5 5 C 1.39775 * 120.00126 * 84.99923 * 4 2 1 6 6 C 1.38954 * 120.00780 * 179.97438 * 5 4 2 7 7 C 1.38002 * 119.99703 * 179.97438 * 6 5 4 8 8 C 1.38905 * 120.00778 * 0.26007 * 7 6 5 9 9 O 1.35795 * 119.99487 * 179.71935 * 8 7 6 10 10 C 1.34806 * 117.00105 * 354.45908 * 9 8 7 11 11 H 1.07995 * 120.00087 * 5.05500 * 10 9 8 12 12 C 1.38623 * 119.99845 * 185.05398 * 10 9 8 13 13 N 1.31577 * 120.00092 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99988 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46830 * 359.97438 * 14 12 10 16 16 H 1.48492 * 109.47171 * 120.00164 * 14 12 10 17 17 H 1.48502 * 109.47183 * 240.00598 * 14 12 10 18 18 C 1.38904 * 120.00733 * 359.48757 * 8 7 6 19 19 C 1.38010 * 120.00499 * 0.51239 * 18 8 7 20 20 C 1.50696 * 109.47033 * 120.00209 * 2 1 3 21 21 C 1.38237 * 119.60516 * 274.72399 * 20 2 1 22 22 C 1.38611 * 119.17234 * 179.75425 * 21 20 2 23 23 C 1.38776 * 118.41023 * 0.51437 * 22 21 20 24 24 Cl 1.73604 * 120.42841 * 179.71051 * 23 22 21 25 25 C 1.38309 * 119.14168 * 359.72718 * 23 22 21 26 26 N 1.31857 * 119.60068 * 95.00073 * 20 2 1 27 27 H 1.09001 * 109.46718 * 299.99952 * 1 2 3 28 28 H 1.09005 * 109.46972 * 59.99499 * 1 2 3 29 29 H 1.08994 * 109.47365 * 179.97438 * 1 2 3 30 30 H 0.97001 * 119.99403 * 264.99585 * 4 2 1 31 31 H 1.07997 * 119.99624 * 359.96486 * 6 5 4 32 32 H 1.08000 * 120.00051 * 179.97438 * 7 6 5 33 33 H 0.96996 * 120.00136 * 179.97438 * 13 12 10 34 34 H 1.07996 * 119.99809 * 180.25252 * 18 8 7 35 35 H 1.08001 * 120.00161 * 179.72091 * 19 18 8 36 36 H 1.07996 * 120.40879 * 0.02562 * 21 20 2 37 37 H 1.07997 * 120.79181 * 180.24253 * 22 21 20 38 38 H 1.07989 * 119.62845 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1518 0.0068 -2.4003 6 6 2.6154 -0.6479 -3.5348 7 6 2.7466 0.0407 -4.7236 8 6 2.4204 1.3895 -4.7847 9 8 2.5550 2.0682 -5.9532 10 6 3.1172 1.4063 -6.9842 11 1 3.3623 0.3593 -6.8843 12 6 3.3807 2.0696 -8.1726 13 7 3.0825 3.3453 -8.2941 14 14 4.1591 1.1522 -9.6015 15 1 4.3954 -0.2613 -9.2123 16 1 3.2487 1.1978 -10.7738 17 1 5.4526 1.7908 -9.9541 18 6 1.9519 2.0430 -3.6520 19 6 1.8205 1.3548 -2.4630 20 6 2.0323 -0.7104 1.2304 21 6 2.1666 -0.0116 2.4155 22 6 2.6246 -0.6751 3.5430 23 6 2.9423 -2.0216 3.4333 24 17 3.5276 -2.9019 4.8103 25 6 2.7870 -2.6529 2.2125 26 7 2.3436 -1.9899 1.1623 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 2.2490 -1.6317 -1.1527 31 1 2.8732 -1.6955 -3.4862 32 1 3.1074 -0.4680 -5.6053 33 1 3.2672 3.8095 -9.1255 34 1 1.6944 3.0907 -3.7008 35 1 1.4606 1.8640 -1.5812 36 1 1.9137 1.0373 2.4633 37 1 2.7356 -0.1556 4.4833 38 1 3.0323 -3.7003 2.1182 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710096276.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:26 Heat of formation + Delta-G solvation = 35.532908 kcal Electronic energy + Delta-G solvation = -22513.370024 eV Core-core repulsion = 18961.608191 eV Total energy + Delta-G solvation = -3551.761833 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.84022 -39.01329 -37.45380 -36.94924 -35.17047 -32.92370 -32.29874 -31.57263 -30.27584 -29.43030 -27.05737 -25.17548 -24.51907 -23.99935 -22.38923 -21.38603 -20.36204 -17.99410 -17.60504 -17.32450 -16.71976 -16.60509 -15.67506 -15.07423 -14.95727 -14.43971 -14.25304 -13.93356 -13.74094 -13.58708 -13.35338 -13.25515 -12.94547 -12.60658 -12.44748 -12.36550 -12.07074 -11.78428 -11.53443 -11.51603 -11.30503 -11.16822 -10.95251 -10.51039 -10.32834 -10.30544 -9.96303 -9.32828 -9.19111 -9.11277 -8.42837 -8.14332 -6.36830 -6.30312 -3.87281 0.46302 0.71631 1.57484 2.22908 2.59778 3.19331 3.20592 3.21280 3.26290 3.69000 3.83846 4.07916 4.25007 4.29584 4.56579 4.69954 4.76494 5.06509 5.16161 5.17851 5.23751 5.41376 5.44409 5.44881 5.60491 5.71027 5.74282 5.81827 6.00223 6.15997 6.24890 6.27870 6.56811 6.89828 6.93143 7.16321 7.34445 7.42829 7.49690 7.67918 8.03084 8.14404 8.33953 9.15864 9.90674 10.88485 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.031046 B = 0.002154 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.678492 B =12993.828323 C =13486.766413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.207 3.793 3 H 0.093 0.907 4 N -0.746 5.746 5 C 0.127 3.873 6 C -0.140 4.140 7 C -0.189 4.189 8 C 0.113 3.887 9 O -0.189 6.189 10 C -0.385 4.385 11 H 0.089 0.911 12 C 0.035 3.965 13 N -0.869 5.869 14 Si 0.937 3.063 15 H -0.268 1.268 16 H -0.278 1.278 17 H -0.278 1.278 18 C -0.150 4.150 19 C -0.150 4.150 20 C 0.137 3.863 21 C -0.153 4.153 22 C -0.062 4.062 23 C -0.098 4.098 24 Cl -0.058 7.058 25 C 0.121 3.879 26 N -0.461 5.461 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.402 0.598 31 H 0.106 0.894 32 H 0.127 0.873 33 H 0.266 0.734 34 H 0.116 0.884 35 H 0.111 0.889 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.097 -9.414 24.667 26.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.099 3.901 3 H 0.111 0.889 4 N -0.383 5.383 5 C 0.029 3.971 6 C -0.162 4.162 7 C -0.208 4.208 8 C 0.060 3.940 9 O -0.094 6.094 10 C -0.462 4.462 11 H 0.106 0.894 12 C -0.168 4.168 13 N -0.506 5.506 14 Si 0.763 3.237 15 H -0.193 1.193 16 H -0.203 1.203 17 H -0.203 1.203 18 C -0.170 4.170 19 C -0.172 4.172 20 C -0.001 4.001 21 C -0.173 4.173 22 C -0.088 4.088 23 C -0.127 4.127 24 Cl -0.029 7.029 25 C -0.037 4.037 26 N -0.170 5.170 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.238 0.762 31 H 0.124 0.876 32 H 0.145 0.855 33 H 0.076 0.924 34 H 0.134 0.866 35 H 0.129 0.871 36 H 0.165 0.835 37 H 0.164 0.836 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -2.234 -9.388 23.834 25.713 hybrid contribution 0.694 -0.567 0.349 0.962 sum -1.540 -9.955 24.183 26.197 Atomic orbital electron populations 1.22308 0.94684 1.02795 1.02564 1.19556 0.93747 0.95450 0.81328 0.88914 1.44159 1.76184 1.12213 1.05735 1.17392 1.02159 0.91674 0.85898 1.20230 1.05298 0.98759 0.91929 1.20999 1.07097 0.94672 0.98066 1.19244 0.96269 0.90765 0.87711 1.83982 1.70759 1.38907 1.15771 1.21278 1.39674 0.94917 0.90327 0.89408 1.25214 0.97557 0.95864 0.98134 1.70055 1.45480 1.08568 1.26510 0.85701 0.78662 0.79047 0.80314 1.19264 1.20340 1.20345 1.20009 1.06531 0.99643 0.90797 1.20177 1.07122 0.92665 0.97245 1.21673 0.93198 0.90047 0.95210 1.21944 1.01030 1.02029 0.92330 1.21525 0.95233 0.92266 0.99803 1.22100 1.05368 0.94287 0.90908 1.98388 1.86905 1.75559 1.42053 1.22805 0.94246 1.00491 0.86201 1.67486 1.10668 1.08767 1.30063 0.92241 0.90730 0.92170 0.76217 0.87591 0.85518 0.92391 0.86554 0.87132 0.83460 0.83599 0.81745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.41 37.16 0.35 -1.30 16 2 C 0.21 2.28 2.52 -69.08 -0.17 2.11 16 3 H 0.09 0.98 6.45 -51.93 -0.33 0.65 16 4 N -0.75 -10.35 5.22 -53.24 -0.28 -10.63 16 5 C 0.13 2.17 6.64 -83.71 -0.56 1.62 16 6 C -0.14 -2.62 9.89 -39.40 -0.39 -3.01 16 7 C -0.19 -4.16 9.16 -39.42 -0.36 -4.52 16 8 C 0.11 2.75 6.65 -39.09 -0.26 2.49 16 9 O -0.19 -5.50 9.76 -0.02 0.00 -5.50 16 10 C -0.39 -11.00 9.48 30.87 0.29 -10.70 16 11 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 12 C 0.03 0.99 5.49 -17.52 -0.10 0.89 16 13 N -0.87 -26.09 13.67 55.48 0.76 -25.33 16 14 Si 0.94 21.07 29.55 -169.99 -5.02 16.05 16 15 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 16 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 18 C -0.15 -3.16 9.98 -39.42 -0.39 -3.55 16 19 C -0.15 -2.63 8.84 -39.40 -0.35 -2.98 16 20 C 0.14 1.38 5.89 -82.58 -0.49 0.90 16 21 C -0.15 -1.19 9.76 -39.44 -0.39 -1.57 16 22 C -0.06 -0.44 9.98 -39.24 -0.39 -0.83 16 23 C -0.10 -0.79 6.34 -39.36 -0.25 -1.04 16 24 Cl -0.06 -0.42 28.99 -51.86 -1.50 -1.92 16 25 C 0.12 1.08 10.99 -17.50 -0.19 0.88 16 26 N -0.46 -4.96 9.04 -9.44 -0.09 -5.05 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.84 7.70 -51.93 -0.40 0.44 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.40 5.50 7.64 -40.82 -0.31 5.19 16 31 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 32 H 0.13 2.82 5.63 -52.49 -0.30 2.52 16 33 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.12 2.36 8.06 -52.49 -0.42 1.93 16 35 H 0.11 1.59 6.10 -52.49 -0.32 1.27 16 36 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.15 0.71 8.06 -52.49 -0.42 0.28 16 38 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 342.18 15.07 5.16 5.16 Total: -1.00 -32.01 342.18 -8.65 -40.66 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -4.03 Total: 7.18 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: -3.64 Total: -20.62 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 0.40 Total: -41.01 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: 0.00 Total: -5.50 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.50 Total: -1.92 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.01 -8.65 -40.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710096276.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.192 kcal (2) G-P(sol) polarization free energy of solvation -32.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds