Wall clock time and date at job start Tue Mar 31 2020 11:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47174 * 2 1 4 4 N 1.46505 * 109.46960 * 240.00466 * 2 1 3 5 5 C 1.39775 * 120.00126 * 84.99923 * 4 2 1 6 6 C 1.38954 * 120.00780 * 179.97438 * 5 4 2 7 7 C 1.38002 * 119.99703 * 179.97438 * 6 5 4 8 8 C 1.38905 * 120.00778 * 0.26007 * 7 6 5 9 9 O 1.35795 * 119.99487 * 179.71935 * 8 7 6 10 10 C 1.34806 * 117.00105 * 354.45908 * 9 8 7 11 11 H 1.07995 * 120.00087 * 5.05500 * 10 9 8 12 12 C 1.38623 * 119.99845 * 185.05398 * 10 9 8 13 13 N 1.31577 * 120.00092 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99988 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46830 * 359.97438 * 14 12 10 16 16 H 1.48492 * 109.47171 * 120.00164 * 14 12 10 17 17 H 1.48502 * 109.47183 * 240.00598 * 14 12 10 18 18 C 1.38904 * 120.00733 * 359.48757 * 8 7 6 19 19 C 1.38010 * 120.00499 * 0.51239 * 18 8 7 20 20 C 1.50696 * 109.47033 * 120.00209 * 2 1 3 21 21 C 1.38237 * 119.60516 * 274.72399 * 20 2 1 22 22 C 1.38611 * 119.17234 * 179.75425 * 21 20 2 23 23 C 1.38776 * 118.41023 * 0.51437 * 22 21 20 24 24 Cl 1.73604 * 120.42841 * 179.71051 * 23 22 21 25 25 C 1.38309 * 119.14168 * 359.72718 * 23 22 21 26 26 N 1.31857 * 119.60068 * 95.00073 * 20 2 1 27 27 H 1.09001 * 109.46718 * 299.99952 * 1 2 3 28 28 H 1.09005 * 109.46972 * 59.99499 * 1 2 3 29 29 H 1.08994 * 109.47365 * 179.97438 * 1 2 3 30 30 H 0.97001 * 119.99403 * 264.99585 * 4 2 1 31 31 H 1.07997 * 119.99624 * 359.96486 * 6 5 4 32 32 H 1.08000 * 120.00051 * 179.97438 * 7 6 5 33 33 H 0.96996 * 120.00136 * 179.97438 * 13 12 10 34 34 H 1.07996 * 119.99809 * 180.25252 * 18 8 7 35 35 H 1.08001 * 120.00161 * 179.72091 * 19 18 8 36 36 H 1.07996 * 120.40879 * 0.02562 * 21 20 2 37 37 H 1.07997 * 120.79181 * 180.24253 * 22 21 20 38 38 H 1.07989 * 119.62845 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1518 0.0068 -2.4003 6 6 2.6154 -0.6479 -3.5348 7 6 2.7466 0.0407 -4.7236 8 6 2.4204 1.3895 -4.7847 9 8 2.5550 2.0682 -5.9532 10 6 3.1172 1.4063 -6.9842 11 1 3.3623 0.3593 -6.8843 12 6 3.3807 2.0696 -8.1726 13 7 3.0825 3.3453 -8.2941 14 14 4.1591 1.1522 -9.6015 15 1 4.3954 -0.2613 -9.2123 16 1 3.2487 1.1978 -10.7738 17 1 5.4526 1.7908 -9.9541 18 6 1.9519 2.0430 -3.6520 19 6 1.8205 1.3548 -2.4630 20 6 2.0323 -0.7104 1.2304 21 6 2.1666 -0.0116 2.4155 22 6 2.6246 -0.6751 3.5430 23 6 2.9423 -2.0216 3.4333 24 17 3.5276 -2.9019 4.8103 25 6 2.7870 -2.6529 2.2125 26 7 2.3436 -1.9899 1.1623 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 2.2490 -1.6317 -1.1527 31 1 2.8732 -1.6955 -3.4862 32 1 3.1074 -0.4680 -5.6053 33 1 3.2672 3.8095 -9.1255 34 1 1.6944 3.0907 -3.7008 35 1 1.4606 1.8640 -1.5812 36 1 1.9137 1.0373 2.4633 37 1 2.7356 -0.1556 4.4833 38 1 3.0323 -3.7003 2.1182 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710096276.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:25 Heat of formation + Delta-G solvation = 16.047794 kcal Electronic energy + Delta-G solvation = -22514.214962 eV Core-core repulsion = 18961.608191 eV Total energy + Delta-G solvation = -3552.606771 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.53429 -40.64248 -38.86633 -37.71036 -36.43588 -34.18981 -33.53924 -32.81808 -31.76518 -30.37352 -28.56830 -27.06001 -25.30457 -24.70763 -23.85129 -22.68337 -21.67435 -19.68503 -18.88135 -18.49280 -17.83366 -17.53651 -16.74753 -16.37846 -16.09033 -15.73042 -15.43856 -15.35656 -15.26980 -14.65597 -14.40217 -14.31135 -14.13390 -14.04625 -13.66513 -13.46312 -13.24960 -13.11930 -12.82595 -12.67294 -12.60521 -12.37116 -12.16285 -12.08469 -12.02271 -11.06706 -10.95211 -10.89324 -10.61858 -10.21985 -9.83941 -9.74093 -8.38004 -7.90806 -6.00962 -0.17694 0.13100 0.61956 0.96061 0.98862 1.37367 1.46101 1.55273 2.23485 2.50149 2.66082 2.93235 3.10726 3.28247 3.63242 3.70240 3.73840 3.94712 4.10697 4.14406 4.19136 4.34032 4.35310 4.60272 4.63475 4.65532 4.80002 4.85174 4.92296 4.94708 5.04370 5.15718 5.29300 5.32893 5.45243 5.51177 5.58643 5.81947 6.01573 6.13753 6.59812 6.82790 7.06289 7.09148 7.95619 8.86672 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.031046 B = 0.002154 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.678492 B =12993.828323 C =13486.766413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.202 3.798 3 H 0.104 0.896 4 N -0.737 5.737 5 C 0.156 3.844 6 C -0.149 4.149 7 C -0.193 4.193 8 C 0.061 3.939 9 O -0.242 6.242 10 C -0.403 4.403 11 H 0.097 0.903 12 C -0.029 4.029 13 N -0.926 5.926 14 Si 1.016 2.984 15 H -0.254 1.254 16 H -0.270 1.270 17 H -0.270 1.270 18 C -0.152 4.152 19 C -0.143 4.143 20 C 0.118 3.882 21 C -0.146 4.146 22 C -0.060 4.060 23 C -0.099 4.099 24 Cl -0.052 7.052 25 C 0.108 3.892 26 N -0.486 5.486 27 H 0.087 0.913 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.405 0.595 31 H 0.131 0.869 32 H 0.116 0.884 33 H 0.269 0.731 34 H 0.116 0.884 35 H 0.150 0.850 36 H 0.175 0.825 37 H 0.172 0.828 38 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.050 -10.720 27.659 29.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.095 3.905 3 H 0.122 0.878 4 N -0.372 5.372 5 C 0.056 3.944 6 C -0.171 4.171 7 C -0.213 4.213 8 C 0.011 3.989 9 O -0.150 6.150 10 C -0.480 4.480 11 H 0.114 0.886 12 C -0.225 4.225 13 N -0.566 5.566 14 Si 0.836 3.164 15 H -0.177 1.177 16 H -0.195 1.195 17 H -0.195 1.195 18 C -0.172 4.172 19 C -0.165 4.165 20 C -0.020 4.020 21 C -0.166 4.166 22 C -0.086 4.086 23 C -0.128 4.128 24 Cl -0.023 7.023 25 C -0.050 4.050 26 N -0.196 5.196 27 H 0.105 0.895 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.241 0.759 31 H 0.149 0.851 32 H 0.134 0.866 33 H 0.078 0.922 34 H 0.134 0.866 35 H 0.168 0.832 36 H 0.193 0.807 37 H 0.189 0.811 38 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -2.205 -10.742 26.922 29.070 hybrid contribution 0.605 -0.308 -0.118 0.689 sum -1.600 -11.050 26.804 29.037 Atomic orbital electron populations 1.22246 0.93726 1.02464 1.03358 1.19791 0.94408 0.95791 0.80469 0.87824 1.44317 1.74927 1.12415 1.05517 1.17510 0.98751 0.91572 0.86599 1.20445 1.05460 0.99932 0.91278 1.21017 1.07140 0.94023 0.99083 1.19756 0.99337 0.92120 0.87667 1.83929 1.73170 1.40553 1.17350 1.21760 1.39729 0.95543 0.90978 0.88619 1.26502 0.98092 0.96885 1.01065 1.70202 1.48058 1.10674 1.27670 0.84563 0.77678 0.78139 0.76036 1.17709 1.19473 1.19511 1.20260 1.05823 0.99996 0.91084 1.20479 1.06114 0.92795 0.97140 1.21581 0.94668 0.90207 0.95544 1.22201 0.99875 1.03186 0.91384 1.21860 0.94146 0.91902 1.00729 1.22204 1.04954 0.94848 0.90820 1.98394 1.86796 1.75562 1.41592 1.23001 0.94514 1.01104 0.86340 1.67396 1.11585 1.09403 1.31167 0.89458 0.91925 0.93089 0.75856 0.85095 0.86638 0.92182 0.86553 0.83205 0.80729 0.81087 0.80699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 9.41 71.98 0.68 -1.99 16 2 C 0.20 3.75 2.52 44.24 0.11 3.86 16 3 H 0.10 1.73 6.45 -2.39 -0.02 1.72 16 4 N -0.74 -18.32 5.22 -322.34 -1.68 -20.01 16 5 C 0.16 5.02 6.64 38.22 0.25 5.27 16 6 C -0.15 -5.41 9.89 22.39 0.22 -5.19 16 7 C -0.19 -8.72 9.16 22.37 0.20 -8.52 16 8 C 0.06 3.09 6.65 22.59 0.15 3.24 16 9 O -0.24 -14.95 9.76 -23.00 -0.22 -15.17 16 10 C -0.40 -24.23 9.48 67.91 0.64 -23.58 16 11 H 0.10 5.32 5.20 -2.91 -0.02 5.31 16 12 C -0.03 -1.72 5.49 84.82 0.47 -1.26 16 13 N -0.93 -58.37 13.67 21.61 0.30 -58.08 16 14 Si 1.02 44.42 29.55 68.60 2.03 46.45 16 15 H -0.25 -10.29 7.11 99.48 0.71 -9.59 16 16 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 17 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 18 C -0.15 -6.47 9.98 22.38 0.22 -6.24 16 19 C -0.14 -4.73 8.84 22.39 0.20 -4.53 16 20 C 0.12 2.00 5.89 42.55 0.25 2.25 16 21 C -0.15 -1.69 9.76 22.36 0.22 -1.47 16 22 C -0.06 -0.64 9.98 22.49 0.22 -0.42 16 23 C -0.10 -1.33 6.34 22.42 0.14 -1.19 16 24 Cl -0.05 -0.64 28.99 -2.72 -0.08 -0.72 16 25 C 0.11 1.70 10.99 84.70 0.93 2.64 16 26 N -0.49 -9.33 9.04 -183.79 -1.66 -10.99 16 27 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.06 1.21 7.70 -2.38 -0.02 1.20 16 29 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.40 10.02 7.64 -92.71 -0.71 9.32 16 31 H 0.13 4.06 8.06 -2.91 -0.02 4.03 16 32 H 0.12 5.36 5.63 -2.91 -0.02 5.34 16 33 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 34 H 0.12 4.84 8.06 -2.91 -0.02 4.81 16 35 H 0.15 3.74 6.10 -2.91 -0.02 3.72 16 36 H 0.18 0.97 8.06 -2.91 -0.02 0.94 16 37 H 0.17 0.92 8.06 -2.91 -0.02 0.89 16 38 H 0.18 2.15 8.06 -2.92 -0.02 2.13 16 Total: -1.00 -74.34 342.18 3.99 -70.34 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: 0.40 Total: 25.30 kcal Atomic # 6 Polarization: -42.03 SS G_CDS: 4.92 Total: -37.11 kcal Atomic # 7 Polarization: -86.03 SS G_CDS: -3.05 Total: -89.08 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.22 Total: -15.17 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -0.08 Total: -0.72 kcal Total: -74.34 3.99 -70.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710096276.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.390 kcal (2) G-P(sol) polarization free energy of solvation -74.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds