Wall clock time and date at job start Tue Mar 31 2020 12:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 S 1.80995 * 109.47234 * 2 1 4 4 C 1.76196 * 100.00189 * 179.97438 * 3 2 1 5 5 C 1.39470 * 119.54620 * 179.97438 * 4 3 2 6 6 C 1.36813 * 119.38053 * 179.97438 * 5 4 3 7 7 C 1.40399 * 118.49592 * 0.27877 * 6 5 4 8 8 C 1.47482 * 120.47071 * 179.72934 * 7 6 5 9 9 O 1.21626 * 120.00298 * 359.97438 * 8 7 6 10 10 N 1.34784 * 120.00089 * 179.97438 * 8 7 6 11 11 C 1.40536 * 120.00259 * 179.97438 * 10 8 7 12 12 C 1.40669 * 126.08340 * 359.69030 * 11 10 8 13 13 N 1.30898 * 108.38470 * 179.81219 * 12 11 10 14 14 N 1.40073 * 108.41507 * 0.44280 * 13 12 11 15 15 C 1.37314 * 126.07032 * 179.69208 * 14 13 12 16 16 H 1.07994 * 119.99952 * 180.02562 * 15 14 13 17 17 C 1.38989 * 120.00051 * 0.02646 * 15 14 13 18 18 N 1.31305 * 119.99804 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00303 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.46900 * 60.00069 * 19 17 15 21 21 H 1.48491 * 109.47474 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47095 * 300.00471 * 19 17 15 23 23 C 1.35694 * 126.08416 * 179.97438 * 11 10 8 24 24 C 1.39595 * 119.05526 * 359.42553 * 7 6 5 25 25 N 1.31655 * 120.52400 * 0.58876 * 24 7 6 26 26 H 1.09003 * 109.46491 * 60.00198 * 1 2 3 27 27 H 1.08994 * 109.47057 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47122 * 300.00822 * 1 2 3 29 29 H 1.08993 * 109.47122 * 239.99178 * 2 1 3 30 30 H 1.09003 * 109.46491 * 119.99802 * 2 1 3 31 31 H 1.08002 * 120.31274 * 359.97019 * 5 4 3 32 32 H 1.08002 * 120.74973 * 179.97438 * 6 5 4 33 33 H 0.97004 * 119.99477 * 359.97438 * 10 8 7 34 34 H 1.08002 * 125.79970 * 0.02562 * 12 11 10 35 35 H 0.96997 * 119.99621 * 179.97438 * 18 17 15 36 36 H 1.07997 * 126.24636 * 359.97331 * 23 11 10 37 37 H 1.08003 * 119.74326 * 180.32208 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1334 1.7064 0.0000 4 6 3.8714 1.4165 0.0008 5 6 4.7494 2.5001 0.0004 6 6 6.0982 2.2711 0.0016 7 6 6.5521 0.9425 -0.0029 8 6 7.9967 0.6457 -0.0079 9 8 8.8044 1.5550 -0.0086 10 7 8.4219 -0.6333 -0.0117 11 6 9.7985 -0.9162 -0.0170 12 6 10.8389 0.0306 -0.0251 13 7 11.9803 -0.6101 -0.0240 14 7 11.7155 -1.9856 -0.0255 15 6 12.6526 -2.9893 -0.0310 16 1 12.3375 -4.0222 -0.0321 17 6 14.0067 -2.6758 -0.0351 18 7 14.3898 -1.4199 -0.0342 19 14 15.2815 -4.0411 -0.0418 20 1 15.1035 -4.8786 -1.2552 21 1 16.6426 -3.4475 -0.0448 22 1 15.1118 -4.8828 1.1698 23 6 10.3606 -2.1512 -0.0207 24 6 5.6165 -0.0935 0.0038 25 7 4.3267 0.1703 0.0026 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 4.3682 3.5106 -0.0008 32 1 6.7980 3.0938 0.0009 33 1 7.7777 -1.3585 -0.0108 34 1 10.7165 1.1037 -0.0279 35 1 15.3348 -1.2011 -0.0367 36 1 9.8324 -3.0932 -0.0198 37 1 5.9534 -1.1196 0.0057 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727801838.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:29 Heat of formation + Delta-G solvation = 82.202512 kcal Electronic energy + Delta-G solvation = -22372.941776 eV Core-core repulsion = 18857.540147 eV Total energy + Delta-G solvation = -3515.401630 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.63531 -39.66910 -38.29338 -34.39395 -33.36126 -33.29026 -32.63152 -31.65510 -30.23305 -27.85094 -25.52184 -24.62794 -23.86675 -23.36089 -21.24655 -20.58731 -19.50053 -18.34584 -17.77226 -17.08864 -16.57052 -15.78676 -15.49664 -15.32002 -15.06540 -14.97757 -14.83919 -14.16196 -13.97829 -13.82647 -13.34198 -13.14323 -13.13176 -12.83984 -12.65336 -11.90151 -11.87555 -11.69602 -11.48206 -11.27056 -11.00732 -10.79756 -10.58000 -10.32620 -10.14003 -10.07018 -10.02074 -9.28907 -9.20135 -8.84688 -8.10107 -7.89754 -6.74388 -6.58568 -4.25673 0.36666 1.02495 1.17814 1.83957 2.78408 2.99482 3.03051 3.07464 3.45976 3.50564 3.81814 3.84556 4.14926 4.41807 4.56796 4.59999 4.61756 4.69049 4.75799 4.86591 4.99476 5.01872 5.10456 5.32463 5.39017 5.44027 5.67089 5.72039 5.91854 6.20735 6.21665 6.42124 6.84678 6.91228 7.05043 7.19539 7.37050 7.82120 8.09067 8.22429 8.56930 8.76214 9.33861 9.62949 10.37243 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.036938 B = 0.002188 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.838952 B =12792.157382 C =13529.532064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.101 4.101 3 S -0.071 6.071 4 C 0.129 3.871 5 C -0.156 4.156 6 C -0.004 4.004 7 C -0.173 4.173 8 C 0.544 3.456 9 O -0.530 6.530 10 N -0.613 5.613 11 C -0.063 4.063 12 C -0.029 4.029 13 N -0.260 5.260 14 N -0.140 5.140 15 C -0.322 4.322 16 H 0.117 0.883 17 C 0.046 3.954 18 N -0.769 5.769 19 Si 0.936 3.064 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.267 1.267 23 C -0.083 4.083 24 C 0.144 3.856 25 N -0.492 5.492 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.144 0.856 32 H 0.154 0.846 33 H 0.395 0.605 34 H 0.177 0.823 35 H 0.276 0.724 36 H 0.146 0.854 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.790 1.900 0.059 22.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.250 4.250 3 S 0.170 5.830 4 C -0.120 4.120 5 C -0.182 4.182 6 C -0.032 4.032 7 C -0.182 4.182 8 C 0.330 3.670 9 O -0.408 6.408 10 N -0.255 5.255 11 C -0.168 4.168 12 C -0.205 4.205 13 N -0.091 5.091 14 N 0.092 4.908 15 C -0.455 4.455 16 H 0.134 0.866 17 C -0.172 4.172 18 N -0.395 5.395 19 Si 0.759 3.241 20 H -0.191 1.191 21 H -0.201 1.201 22 H -0.191 1.191 23 C -0.234 4.234 24 C -0.017 4.017 25 N -0.204 5.204 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.162 0.838 32 H 0.171 0.829 33 H 0.230 0.770 34 H 0.194 0.806 35 H 0.087 0.913 36 H 0.164 0.836 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -22.082 3.114 0.058 22.300 hybrid contribution 0.652 -1.662 0.000 1.786 sum -21.430 1.452 0.057 21.479 Atomic orbital electron populations 1.21599 0.92361 1.03111 1.02976 1.23405 0.99260 0.95209 1.07137 1.85749 0.93877 1.12454 1.90966 1.23254 0.99020 0.91844 0.97864 1.21398 0.93062 0.99599 1.04174 1.21391 0.95169 0.96610 0.90016 1.21061 0.94858 0.95245 1.06989 1.17685 0.86972 0.83027 0.79365 1.90692 1.54707 1.45034 1.50415 1.42389 1.06065 1.06635 1.70428 1.17237 0.81934 0.93402 1.24237 1.24135 0.88804 0.99952 1.07611 1.78269 1.19568 0.85551 1.25751 1.44560 1.02340 1.05049 1.38820 1.19841 0.85674 0.86534 1.53423 0.86592 1.25659 0.98491 0.97559 0.95466 1.70209 1.17349 1.16969 1.34968 0.85882 0.78888 0.79816 0.79493 1.19130 1.20112 1.19137 1.21255 0.85651 0.96533 1.19970 1.22947 0.87489 0.99246 0.92057 1.68033 1.16761 1.20015 1.15638 0.91726 0.90652 0.91730 0.88760 0.88754 0.83805 0.82864 0.77047 0.80638 0.91344 0.83602 0.81999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 9.92 37.16 0.37 -0.40 16 2 C -0.10 -0.77 5.54 37.16 0.21 -0.56 16 3 S -0.07 -0.64 22.05 -107.50 -2.37 -3.01 16 4 C 0.13 1.45 6.98 -16.73 -0.12 1.33 16 5 C -0.16 -1.66 9.77 -39.64 -0.39 -2.05 16 6 C 0.00 -0.05 9.65 -39.28 -0.38 -0.43 16 7 C -0.17 -2.37 5.89 -104.81 -0.62 -2.98 16 8 C 0.54 9.56 7.74 -12.49 -0.10 9.46 16 9 O -0.53 -11.24 13.55 5.25 0.07 -11.17 16 10 N -0.61 -10.76 5.42 -10.95 -0.06 -10.81 16 11 C -0.06 -1.42 6.90 -83.86 -0.58 -2.00 16 12 C -0.03 -0.77 10.85 -17.03 -0.18 -0.96 16 13 N -0.26 -7.53 10.39 30.80 0.32 -7.21 16 14 N -0.14 -3.82 3.74 -11.41 -0.04 -3.87 16 15 C -0.32 -8.44 10.25 -14.82 -0.15 -8.59 16 16 H 0.12 2.69 7.83 -52.49 -0.41 2.28 16 17 C 0.05 1.17 5.50 -17.50 -0.10 1.07 16 18 N -0.77 -21.36 11.81 55.50 0.66 -20.70 16 19 Si 0.94 18.75 29.55 -169.99 -5.02 13.72 16 20 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 21 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 22 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 23 C -0.08 -1.92 11.49 -16.38 -0.19 -2.11 16 24 C 0.14 1.69 10.71 -17.12 -0.18 1.51 16 25 N -0.49 -5.80 9.10 -11.67 -0.11 -5.91 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.76 8.12 -51.92 -0.42 0.34 16 30 H 0.09 0.76 8.12 -51.91 -0.42 0.34 16 31 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 32 H 0.15 1.80 7.73 -52.49 -0.41 1.39 16 33 H 0.40 5.26 6.87 -40.82 -0.28 4.98 16 34 H 0.18 4.55 5.91 -52.49 -0.31 4.24 16 35 H 0.28 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.15 2.79 8.06 -52.49 -0.42 2.36 16 37 H 0.16 1.49 6.41 -52.48 -0.34 1.15 16 LS Contribution 337.96 15.07 5.09 5.09 Total: -1.00 -33.29 337.96 -7.70 -41.00 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -3.84 Total: 9.59 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -2.41 Total: -6.72 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.77 Total: -48.50 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.07 Total: -11.17 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.02 Total: 13.72 kcal Atomic # 16 Polarization: -0.64 SS G_CDS: -2.37 Total: -3.01 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.29 -7.70 -41.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727801838.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.198 kcal (2) G-P(sol) polarization free energy of solvation -33.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds