Wall clock time and date at job start Tue Mar 31 2020 12:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 S 1.80995 * 109.47234 * 2 1 4 4 C 1.76196 * 100.00189 * 179.97438 * 3 2 1 5 5 C 1.39470 * 119.54620 * 179.97438 * 4 3 2 6 6 C 1.36813 * 119.38053 * 179.97438 * 5 4 3 7 7 C 1.40399 * 118.49592 * 0.27877 * 6 5 4 8 8 C 1.47482 * 120.47071 * 179.72934 * 7 6 5 9 9 O 1.21626 * 120.00298 * 359.97438 * 8 7 6 10 10 N 1.34784 * 120.00089 * 179.97438 * 8 7 6 11 11 C 1.40536 * 120.00259 * 179.97438 * 10 8 7 12 12 C 1.40669 * 126.08340 * 359.69030 * 11 10 8 13 13 N 1.30898 * 108.38470 * 179.81219 * 12 11 10 14 14 N 1.40073 * 108.41507 * 0.44280 * 13 12 11 15 15 C 1.37314 * 126.07032 * 179.69208 * 14 13 12 16 16 H 1.07994 * 119.99952 * 180.02562 * 15 14 13 17 17 C 1.38989 * 120.00051 * 0.02646 * 15 14 13 18 18 N 1.31305 * 119.99804 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00303 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.46900 * 60.00069 * 19 17 15 21 21 H 1.48491 * 109.47474 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47095 * 300.00471 * 19 17 15 23 23 C 1.35694 * 126.08416 * 179.97438 * 11 10 8 24 24 C 1.39595 * 119.05526 * 359.42553 * 7 6 5 25 25 N 1.31655 * 120.52400 * 0.58876 * 24 7 6 26 26 H 1.09003 * 109.46491 * 60.00198 * 1 2 3 27 27 H 1.08994 * 109.47057 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47122 * 300.00822 * 1 2 3 29 29 H 1.08993 * 109.47122 * 239.99178 * 2 1 3 30 30 H 1.09003 * 109.46491 * 119.99802 * 2 1 3 31 31 H 1.08002 * 120.31274 * 359.97019 * 5 4 3 32 32 H 1.08002 * 120.74973 * 179.97438 * 6 5 4 33 33 H 0.97004 * 119.99477 * 359.97438 * 10 8 7 34 34 H 1.08002 * 125.79970 * 0.02562 * 12 11 10 35 35 H 0.96997 * 119.99621 * 179.97438 * 18 17 15 36 36 H 1.07997 * 126.24636 * 359.97331 * 23 11 10 37 37 H 1.08003 * 119.74326 * 180.32208 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1334 1.7064 0.0000 4 6 3.8714 1.4165 0.0008 5 6 4.7494 2.5001 0.0004 6 6 6.0982 2.2711 0.0016 7 6 6.5521 0.9425 -0.0029 8 6 7.9967 0.6457 -0.0079 9 8 8.8044 1.5550 -0.0086 10 7 8.4219 -0.6333 -0.0117 11 6 9.7985 -0.9162 -0.0170 12 6 10.8389 0.0306 -0.0251 13 7 11.9803 -0.6101 -0.0240 14 7 11.7155 -1.9856 -0.0255 15 6 12.6526 -2.9893 -0.0310 16 1 12.3375 -4.0222 -0.0321 17 6 14.0067 -2.6758 -0.0351 18 7 14.3898 -1.4199 -0.0342 19 14 15.2815 -4.0411 -0.0418 20 1 15.1035 -4.8786 -1.2552 21 1 16.6426 -3.4475 -0.0448 22 1 15.1118 -4.8828 1.1698 23 6 10.3606 -2.1512 -0.0207 24 6 5.6165 -0.0935 0.0038 25 7 4.3267 0.1703 0.0026 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 4.3682 3.5106 -0.0008 32 1 6.7980 3.0938 0.0009 33 1 7.7777 -1.3585 -0.0108 34 1 10.7165 1.1037 -0.0279 35 1 15.3348 -1.2011 -0.0367 36 1 9.8324 -3.0932 -0.0198 37 1 5.9534 -1.1196 0.0057 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727801838.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:28 Heat of formation + Delta-G solvation = 60.584441 kcal Electronic energy + Delta-G solvation = -22373.879206 eV Core-core repulsion = 18857.540147 eV Total energy + Delta-G solvation = -3516.339059 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.93793 -41.22686 -39.76171 -36.03948 -35.07204 -34.05194 -33.42372 -32.78016 -32.12918 -29.61281 -27.08392 -25.90990 -24.82244 -24.06158 -22.94894 -22.15715 -21.26578 -19.53172 -19.19396 -18.39282 -17.70117 -17.40202 -16.60629 -16.46306 -16.32520 -16.13094 -15.83326 -15.63804 -15.23255 -14.98313 -14.83686 -14.76397 -14.32545 -13.88631 -13.47055 -13.32222 -13.23872 -12.87798 -12.87642 -12.55660 -12.37761 -12.13746 -11.89842 -11.47115 -11.19875 -11.16855 -11.02076 -10.91599 -10.83153 -10.59535 -10.10793 -8.72630 -8.49738 -8.46879 -6.24251 -0.63330 0.12309 0.40173 1.15462 1.25607 1.40316 1.56824 1.57186 1.86450 1.99467 2.23907 2.39737 2.76688 2.88845 3.09534 3.29590 3.67044 3.76849 3.89561 3.97060 4.06241 4.09398 4.43143 4.49102 4.57565 4.58786 4.79976 4.92710 4.94530 4.95865 5.00529 5.12384 5.24770 5.28083 5.31281 5.40617 5.95236 6.29459 6.45357 6.65015 6.72934 7.27597 7.45731 7.66922 8.52265 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.036938 B = 0.002188 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.838952 B =12792.157382 C =13529.532064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 S -0.055 6.055 4 C 0.123 3.877 5 C -0.155 4.155 6 C -0.007 4.007 7 C -0.193 4.193 8 C 0.548 3.452 9 O -0.572 6.572 10 N -0.606 5.606 11 C -0.047 4.047 12 C -0.057 4.057 13 N -0.310 5.310 14 N -0.167 5.167 15 C -0.353 4.353 16 H 0.142 0.858 17 C -0.008 4.008 18 N -0.824 5.824 19 Si 1.020 2.980 20 H -0.253 1.253 21 H -0.279 1.279 22 H -0.253 1.253 23 C -0.077 4.077 24 C 0.156 3.844 25 N -0.499 5.499 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.169 0.831 32 H 0.151 0.849 33 H 0.418 0.582 34 H 0.168 0.832 35 H 0.276 0.724 36 H 0.191 0.809 37 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.597 -0.034 0.064 25.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.250 4.250 3 S 0.187 5.813 4 C -0.126 4.126 5 C -0.180 4.180 6 C -0.035 4.035 7 C -0.202 4.202 8 C 0.336 3.664 9 O -0.452 6.452 10 N -0.251 5.251 11 C -0.153 4.153 12 C -0.232 4.232 13 N -0.142 5.142 14 N 0.064 4.936 15 C -0.484 4.484 16 H 0.160 0.840 17 C -0.219 4.219 18 N -0.452 5.452 19 Si 0.838 3.162 20 H -0.177 1.177 21 H -0.204 1.204 22 H -0.177 1.177 23 C -0.228 4.228 24 C -0.006 4.006 25 N -0.212 5.212 26 H 0.086 0.914 27 H 0.108 0.892 28 H 0.086 0.914 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.187 0.813 32 H 0.169 0.831 33 H 0.257 0.743 34 H 0.185 0.815 35 H 0.086 0.914 36 H 0.208 0.792 37 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -24.979 1.169 0.063 25.007 hybrid contribution 1.185 -0.955 0.000 1.522 sum -23.794 0.214 0.062 23.795 Atomic orbital electron populations 1.21611 0.90619 1.04197 1.03296 1.23506 1.00671 0.93965 1.06811 1.85767 0.91880 1.13716 1.89984 1.23755 1.00600 0.91876 0.96320 1.21623 0.92155 1.00812 1.03457 1.21487 0.96078 0.96153 0.89770 1.20723 0.92403 0.96558 1.10515 1.18296 0.88422 0.82287 0.77359 1.90674 1.56348 1.46263 1.51945 1.42269 1.04330 1.07742 1.70725 1.17289 0.83800 0.92447 1.21783 1.24189 0.89818 1.00175 1.09066 1.78161 1.21328 0.87248 1.27492 1.44850 1.03942 1.04530 1.40236 1.20596 0.86341 0.87507 1.53983 0.84023 1.26905 1.00727 1.00168 0.94148 1.70398 1.17770 1.19847 1.37219 0.84643 0.75048 0.76171 0.80292 1.17684 1.20399 1.17698 1.22013 0.84640 0.98321 1.17817 1.23253 0.87178 0.99796 0.90349 1.68154 1.16418 1.20313 1.16287 0.91399 0.89185 0.91402 0.89074 0.89066 0.81343 0.83083 0.74341 0.81489 0.91388 0.79208 0.79591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.92 71.98 0.71 -0.40 16 2 C -0.10 -1.27 5.54 71.98 0.40 -0.87 16 3 S -0.05 -0.85 22.05 -56.49 -1.25 -2.10 16 4 C 0.12 2.48 6.98 84.86 0.59 3.07 16 5 C -0.15 -3.00 9.77 22.23 0.22 -2.78 16 6 C -0.01 -0.17 9.65 22.46 0.22 0.05 16 7 C -0.19 -5.09 5.89 -19.99 -0.12 -5.21 16 8 C 0.55 19.24 7.74 86.68 0.67 19.91 16 9 O -0.57 -25.07 13.55 -4.11 -0.06 -25.12 16 10 N -0.61 -20.66 5.42 -306.79 -1.66 -22.32 16 11 C -0.05 -2.14 6.90 37.75 0.26 -1.88 16 12 C -0.06 -3.13 10.85 85.43 0.93 -2.20 16 13 N -0.31 -18.76 10.39 -56.46 -0.59 -19.35 16 14 N -0.17 -9.22 3.74 -190.01 -0.71 -9.93 16 15 C -0.35 -18.56 10.25 84.01 0.86 -17.70 16 16 H 0.14 6.38 7.83 -2.91 -0.02 6.36 16 17 C -0.01 -0.41 5.50 84.95 0.47 0.06 16 18 N -0.82 -47.68 11.81 21.66 0.26 -47.42 16 19 Si 1.02 38.37 29.55 68.60 2.03 40.40 16 20 H -0.25 -8.87 7.11 99.48 0.71 -8.16 16 21 H -0.28 -10.46 7.11 99.48 0.71 -9.75 16 22 H -0.25 -8.87 7.11 99.48 0.71 -8.17 16 23 C -0.08 -3.53 11.49 83.38 0.96 -2.57 16 24 C 0.16 3.31 10.71 85.05 0.91 4.22 16 25 N -0.50 -10.57 9.10 -190.82 -1.74 -12.31 16 26 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.09 1.24 8.12 -2.40 -0.02 1.22 16 30 H 0.09 1.24 8.12 -2.39 -0.02 1.22 16 31 H 0.17 2.35 8.06 -2.91 -0.02 2.32 16 32 H 0.15 3.58 7.73 -2.91 -0.02 3.56 16 33 H 0.42 10.12 6.87 -92.70 -0.64 9.48 16 34 H 0.17 9.23 5.91 -2.91 -0.02 9.21 16 35 H 0.28 14.74 8.31 -92.71 -0.77 13.97 16 36 H 0.19 6.67 8.06 -2.91 -0.02 6.64 16 37 H 0.19 2.85 6.41 -2.91 -0.02 2.83 16 Total: -1.00 -76.08 337.96 3.85 -72.23 By element: Atomic # 1 Polarization: 31.73 SS G_CDS: 0.49 Total: 32.22 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: 7.08 Total: -6.30 kcal Atomic # 7 Polarization: -106.89 SS G_CDS: -4.44 Total: -111.33 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.06 Total: -25.12 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 2.03 Total: 40.40 kcal Atomic # 16 Polarization: -0.85 SS G_CDS: -1.25 Total: -2.10 kcal Total: -76.08 3.85 -72.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727801838.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.814 kcal (2) G-P(sol) polarization free energy of solvation -76.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds